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Rnits

This is the development version of Rnits; for the stable release version, see Rnits.

R Normalization and Inference of Time Series data


Bioconductor version: Development (3.19)

R/Bioconductor package for normalization, curve registration and inference in time course gene expression data.

Author: Dipen P. Sangurdekar <dipen.sangurdekar at gmail.com>

Maintainer: Dipen P. Sangurdekar <dipen.sangurdekar at gmail.com>

Citation (from within R, enter citation("Rnits")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rnits")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rnits")
R/Bioconductor package for normalization and differential expression inference in time series gene expression microarray data. PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Normalization, Software, TimeCourse
Version 1.37.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-3
Depends R (>= 3.6.0), Biobase, ggplot2, limma, methods
Imports affy, boot, impute, splines, graphics, qvalue, reshape2
System Requirements
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Suggests BiocStyle, knitr, GEOquery, stringr
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rnits_1.37.0.tar.gz
Windows Binary Rnits_1.37.0.zip
macOS Binary (x86_64) Rnits_1.37.0.tgz
macOS Binary (arm64) Rnits_1.37.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rnits
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rnits
Bioc Package Browser https://code.bioconductor.org/browse/Rnits/
Package Short Url https://bioconductor.org/packages/Rnits/
Package Downloads Report Download Stats