DOI: 10.18129/B9.bioc.RJMCMCNucleosomes  

This is the development version of RJMCMCNucleosomes; for the stable release version, see RJMCMCNucleosomes.

Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)

Bioconductor version: Development (3.19)

This package does nucleosome positioning using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.

Author: Pascal Belleau [aut], Rawane Samb [aut], Astrid DeschĂȘnes [cre, aut], Khader Khadraoui [aut], Lajmi Lakhal-Chaieb [aut], Arnaud Droit [aut]

Maintainer: Astrid DeschĂȘnes <adeschen at hotmail.com>

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biocViews Bayesian, BiologicalQuestion, ChIPSeq, Coverage, NucleosomePositioning, Sequencing, Software, StatisticalMethod
Version 1.27.0
In Bioconductor since BioC 3.5 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), IRanges, GenomicRanges
Imports Rcpp (>= 0.12.5), consensusSeekeR, BiocGenerics, GenomeInfoDb, S4Vectors(>= 0.23.10), BiocParallel, stats, graphics, methods, grDevices
LinkingTo Rcpp
Suggests BiocStyle, knitr, rmarkdown, nucleoSim, RUnit
SystemRequirements Rcpp
URL https://github.com/ArnaudDroitLab/RJMCMCNucleosomes
BugReports https://github.com/ArnaudDroitLab/RJMCMCNucleosomes/issues
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