RJMCMCNucleosomes
This is the development version of RJMCMCNucleosomes; for the stable release version, see RJMCMCNucleosomes.
All Bioconductor versions of RJMCMCNucleosomes
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)
Bioconductor version: 3.24 · Package version: 1.37.0
This package does nucleosome positioning using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.
Author: Pascal Belleau [aut], Rawane Samb [aut], Astrid Deschênes [cre, aut], Khader Khadraoui [aut], Lajmi Lakhal-Chaieb [aut], Arnaud Droit [aut]
Maintainer: Astrid Deschênes <adeschen at hotmail.com>
Citation
From within R, enter citation("RJMCMCNucleosomes"):
Pascal Belleau, Rawane Samb, Astrid Deschênes, Khader Khadraoui, Lajmi Lakhal-Chaieb, Arnaud Droit. RJMCMCNucleosomes: Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq). doi:10.18129/B9.bioc.RJMCMCNucleosomes, R package version 1.37.0, https://bioconductor.org/packages/RJMCMCNucleosomes.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("RJMCMCNucleosomes")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.37.0 |
| License | Artistic-2.0 |
| URL | https://github.com/ArnaudDroitLab/RJMCMCNucleosomes |
| Bug Reports | https://github.com/ArnaudDroitLab/RJMCMCNucleosomes/issues |
| System Requirements | Rcpp |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.5 (R-3.4) (9 years) |
| Downloads rank | 1058 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Bayesian, BiologicalQuestion, ChIPSeq, Coverage, NucleosomePositioning, Sequencing, Software, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/RJMCMCNucleosomes/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RJMCMCNucleosomes")| Nucleosome Positioning | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | RJMCMCNucleosomes_1.37.0.tar.gz |
| Windows binary (x86_64) | RJMCMCNucleosomes_1.37.0.zip |
| macOS binary (arm64) | RJMCMCNucleosomes_1.37.0.tgz |
| macOS binary (x86_64) | RJMCMCNucleosomes_1.37.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RJMCMCNucleosomes |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RJMCMCNucleosomes |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5), IRanges, GenomicRanges
Imports: Rcpp (>= 0.12.5), consensusSeekeR, BiocGenerics, Seqinfo, S4Vectors (>= 0.23.10), BiocParallel, stats, graphics, methods, grDevices
LinkingTo: Rcpp