• Home
• Bioconductor 3.23
• Software Packages
• RJMCMCNucleosomes

RJMCMCNucleosomes

This is the released version of RJMCMCNucleosomes; for the devel version, see RJMCMCNucleosomes.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5

Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)

DOI: 10.18129/B9.bioc.RJMCMCNucleosomes

Bioconductor version: Release (3.23)

This package does nucleosome positioning using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.

Author: Pascal Belleau [aut], Rawane Samb [aut], Astrid Deschênes [cre, aut], Khader Khadraoui [aut], Lajmi Lakhal-Chaieb [aut], Arnaud Droit [aut]

Maintainer: Astrid Deschênes <adeschen at hotmail.com>

Citation (from within R, enter citation("RJMCMCNucleosomes")):

Pascal Belleau, Rawane Samb, Astrid Deschênes, Khader Khadraoui, Lajmi Lakhal-Chaieb, Arnaud Droit. RJMCMCNucleosomes: Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq). doi:10.18129/B9.bioc.RJMCMCNucleosomes, R package version 1.36.0, https://bioconductor.org/packages/RJMCMCNucleosomes.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RJMCMCNucleosomes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RJMCMCNucleosomes")

Details

Package Archives

Follow Installation instructions to use this package in your R session.