RITAN

This is the development version of RITAN; for the stable release version, see RITAN.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5

Rapid Integration of Term Annotation and Network resources

Bioconductor version: Development (3.24)

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.

Author: Michael Zimmermann [aut, cre]

Maintainer: Michael Zimmermann <mtzimmermann at mcw.edu>

Citation (from within R, enter citation("RITAN")):

Michael Zimmermann. RITAN: Rapid Integration of Term Annotation and Network resources. doi:10.18129/B9.bioc.RITAN, R package version 1.37.0, https://bioconductor.org/packages/RITAN.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("RITAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RITAN")

Choosing Resources	HTML	R Script
Enrichment Vignette	HTML	R Script
Multi-Tissue Analysis	HTML	R Script
Relationships Among Resources	HTML	R Script
Network Biology Vignette	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	FunctionalGenomics, GeneSetEnrichment, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, QualityControl, Software
Version	1.37.0
In Bioconductor since	BioC 3.5 (R-3.4) (9.5 years)
License	file LICENSE
Depends	R (>= 4.0)
Imports	graphics, methods, stats, utils, grid, gridExtra, reshape2, gplots, ggplot2, plotrix, RColorBrewer, STRINGdb, MCL, dynamicTreeCut, gsubfn, hash, png, sqldf, igraph, BgeeDB, knitr, RITANdata, GenomicFeatures, ensembldb, AnnotationFilter, EnsDb.Hsapiens.v86
System Requirements
URL

Suggests	rmarkdown, BgeeDB
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RITAN_1.37.0.tar.gz
Windows Binary (x86_64)	RITAN_1.37.0.zip
macOS Binary (big-sur-x86_64)	RITAN_1.37.0.tgz
macOS Binary (sonoma-arm64)	RITAN_1.37.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RITAN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RITAN
Package Short Url	https://bioconductor.org/packages/RITAN/
Package Downloads Report	Download Stats