Prostar

DOI: 10.18129/B9.bioc.Prostar    

This is the development version of Prostar; for the stable release version, see Prostar.

Provides a GUI for DAPAR

Bioconductor version: Development (3.17)

This package provides a GUI interface for the DAPAR package. The package Prostar (Proteomics statistical analysis with R) is a Bioconductor distributed R package which provides all the necessary functions to analyze quantitative data from label-free proteomics experiments. Contrarily to most other similar R packages, it is endowed with rich and user-friendly graphical interfaces, so that no programming skill is required.

Author: Thomas Burger [aut], Florence Combes [aut], Samuel Wieczorek [cre, aut]

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Citation (from within R, enter citation("Prostar")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Prostar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Prostar")

 

PDF R Script Prostar User Manual
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews GUI, MassSpectrometry, Normalization, Preprocessing, Proteomics, Software
Version 1.31.0
In Bioconductor since BioC 3.2 (R-3.2) (7 years)
License Artistic-2.0
Depends R (>= 4.2.0)
Imports DAPAR(>= 1.29.3), DAPARdata(>= 1.27.3), rhandsontable, data.table, shiny, shinyBS, shinyAce, highcharter, htmlwidgets, webshot, shinythemes, later, shinycssloaders, future, promises, shinyjqui, tibble, ggplot2, gplots, shinyjs, vioplot
LinkingTo
Suggests BiocStyle, BiocManager, testthat, shinyTree, knitr, colourpicker, gtools, XML, R.utils, RColorBrewer, DT, shinyWidgets, sass
SystemRequirements
Enhances
URL http://www.prostar-proteomics.org/
BugReports https://github.com/prostarproteomics/Prostar/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Prostar_1.31.0.tar.gz
Windows Binary Prostar_1.31.0.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/Prostar
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Prostar
Package Short Url https://bioconductor.org/packages/Prostar/
Package Downloads Report Download Stats

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