OncoScore

DOI: 10.18129/B9.bioc.OncoScore    

This is the development version of OncoScore; to use it, please install the devel version of Bioconductor.

A tool to identify potentially oncogenic genes

Bioconductor version: Development (3.10)

OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.

Author: Luca De Sano [aut], Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb], Daniele Ramazzotti [aut, cre], Roberta Spinelli [ctb]

Maintainer: Luca De Sano <luca.desano at gmail.com>

Citation (from within R, enter citation("OncoScore")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("OncoScore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OncoScore")

 

PDF R Script OncoScore
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews BiomedicalInformatics, Software
Version 1.13.0
In Bioconductor since BioC 3.3 (R-3.3) (3.5 years)
License file LICENSE
Depends R (>= 3.6)
Imports biomaRt, grDevices, graphics, utils, methods
LinkingTo
Suggests BiocGenerics, BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL https://github.com/danro9685/OncoScore
BugReports https://github.com/danro9685/OncoScore
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OncoScore_1.13.0.tar.gz
Windows Binary OncoScore_1.13.0.zip
Mac OS X 10.11 (El Capitan) OncoScore_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OncoScore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OncoScore
Package Short Url http://bioconductor.org/packages/OncoScore/
Package Downloads Report Download Stats

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