OVESEG
This is the development version of OVESEG; for the stable release version, see OVESEG.
All Bioconductor versions of OVESEG
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9
OVESEG-test to detect tissue/cell-specific markers
Bioconductor version: 3.24 · Package version: 1.29.0
An R package for multiple-group comparison to detect tissue/cell-specific marker genes among subtypes. It provides functions to compute OVESEG-test statistics, derive component weights in the mixture null distribution model and estimate p-values from weightedly aggregated permutations. Obtained posterior probabilities of component null hypotheses can also portrait all kinds of upregulation patterns among subtypes.
Author: Lulu Chen <luluchen at vt.edu>
Maintainer: Lulu Chen <luluchen at vt.edu>
Citation
From within R, enter citation("OVESEG"):
Lulu Chen. OVESEG: OVESEG-test to detect tissue/cell-specific markers. doi:10.18129/B9.bioc.OVESEG, R package version 1.29.0, https://bioconductor.org/packages/OVESEG.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("OVESEG")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.29.0 |
| License | GPL-2 |
| Bug Reports | https://github.com/Lululuella/OVESEG |
| System Requirements | C++11 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.9 (R-3.6) (7 years) |
| Downloads rank | 1401 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | CellBiology, GeneExpression, MultipleComparison, Software |
| Package Short Url | https://bioconductor.org/packages/OVESEG/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OVESEG")| OVESEG User Manual | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | OVESEG_1.29.0.tar.gz |
| Windows binary (x86_64) | OVESEG_1.29.0.zip |
| macOS binary (arm64) | OVESEG_1.29.0.tgz |
| macOS binary (x86_64) | OVESEG_1.29.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OVESEG |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OVESEG |
| Package Downloads Report | Download Stats |