OVESEG
This is the released version of OVESEG; for the devel version, see OVESEG.
OVESEG-test to detect tissue/cell-specific markers
Bioconductor version: Release (3.23)
An R package for multiple-group comparison to detect tissue/cell-specific marker genes among subtypes. It provides functions to compute OVESEG-test statistics, derive component weights in the mixture null distribution model and estimate p-values from weightedly aggregated permutations. Obtained posterior probabilities of component null hypotheses can also portrait all kinds of upregulation patterns among subtypes.
Author: Lulu Chen <luluchen at vt.edu>
Maintainer: Lulu Chen <luluchen at vt.edu>
citation("OVESEG")):Lulu Chen. OVESEG: OVESEG-test to detect tissue/cell-specific markers. doi:10.18129/B9.bioc.OVESEG, R package version 1.28.0, https://bioconductor.org/packages/OVESEG.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OVESEG")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OVESEG")| OVESEG User Manual | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBiology, GeneExpression, MultipleComparison, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (7.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.6) |
| Imports | stats, utils, methods, BiocParallel, SummarizedExperiment, limma, fdrtool, Rcpp |
| System Requirements | C++11 |
| URL | |
| Bug Reports | https://github.com/Lululuella/OVESEG |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat, ggplot2, gridExtra, grid, reshape2, scales |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OVESEG_1.28.0.tar.gz |
| Windows Binary (x86_64) | OVESEG_1.28.0.zip |
| macOS Binary (big-sur-x86_64) | OVESEG_1.28.0.tgz |
| macOS Binary (sonoma-arm64) | OVESEG_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OVESEG |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OVESEG |
| Package Short Url | https://bioconductor.org/packages/OVESEG/ |
| Package Downloads Report | Download Stats |