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MPFE

This is the development version of MPFE; for the stable release version, see MPFE.

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data


Bioconductor version: Development (3.19)

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Author: Peijie Lin, Sylvain Foret, Conrad Burden

Maintainer: Conrad Burden <conrad.burden at anu.edu.au>

Citation (from within R, enter citation("MPFE")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MPFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MPFE")
MPFE PDF R Script
Reference Manual PDF
README Text

Details

biocViews DNAMethylation, HighThroughputSequencingData, MethylSeq, Software
Version 1.39.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL (>= 3)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MPFE_1.39.0.tar.gz
Windows Binary MPFE_1.39.0.zip (64-bit only)
macOS Binary (x86_64) MPFE_1.39.0.tgz
macOS Binary (arm64) MPFE_1.39.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MPFE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MPFE
Bioc Package Browser https://code.bioconductor.org/browse/MPFE/
Package Short Url https://bioconductor.org/packages/MPFE/
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