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MLSeq

This is the development version of MLSeq; for the stable release version, see MLSeq.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14

Machine Learning Interface for RNA-Seq Data


Bioconductor version: Development (3.24)

This package applies several machine learning methods, including SVM, bagSVM, Random Forest and CART to RNA-Seq data.

Author: Gokmen Zararsiz [aut, cre], Dincer Goksuluk [aut], Selcuk Korkmaz [aut], Vahap Eldem [aut], Izzet Parug Duru [ctb], Ahmet Ozturk [aut], Ahmet Ergun Karaagaoglu [aut, ths]

Maintainer: Gokmen Zararsiz <gokmenzararsiz at hotmail.com>

Citation (from within R, enter citation("MLSeq")):

Gokmen Zararsiz, Dincer Goksuluk, Selcuk Korkmaz, Vahap Eldem, Ahmet Ozturk, Ahmet Ergun Karaagaoglu. MLSeq: Machine Learning Interface for RNA-Seq Data. doi:10.18129/B9.bioc.MLSeq, R package version 2.31.0, https://bioconductor.org/packages/MLSeq.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("MLSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MLSeq")
Beginner's guide to the "MLSeq" package PDF R Script
Reference ManualPDF
NEWSText

Details

biocViews Classification, Clustering, ImmunoOncology, RNASeq, Sequencing, Software
Version2.31.0
In Bioconductor sinceBioC 2.14 (R-3.1) (12.5 years)
License GPL(>=2)
Depends caret, ggplot2
Imports testthat, VennDiagram, pamr, methods, DESeq2, edgeR, limma, Biobase, SummarizedExperiment, plyr, foreach, utils, sSeq, xtable
System Requirements
URL
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Suggests knitr, e1071, kernlab
Linking To
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Depends On Me
Imports Me GARS
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Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MLSeq_2.31.0.tar.gz
Windows Binary (x86_64) MLSeq_2.31.0.zip
macOS Binary (big-sur-x86_64) MLSeq_2.31.0.tgz
macOS Binary (sonoma-arm64) MLSeq_2.31.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/MLSeq
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/MLSeq
Package Short Url https://bioconductor.org/packages/MLSeq/
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