• Home
• Bioconductor 3.24
• Software Packages
• GeoDiff (development version)

GeoDiff

This is the development version of GeoDiff; for the stable release version, see GeoDiff.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14

Count model based differential expression and normalization on GeoMx RNA data

DOI: 10.18129/B9.bioc.GeoDiff

Bioconductor version: Development (3.24)

A series of statistical models using count generating distributions for background modelling, feature and sample QC, normalization and differential expression analysis on GeoMx RNA data. The application of these methods are demonstrated by example data analysis vignette.

Author: Maddy Griswold [cre], Lei Yang [aut], Zhi Yang [aut]

Maintainer: Maddy Griswold <mgriswold at nanostring.com>

Citation (from within R, enter citation("GeoDiff")):

Lei Yang, Zhi Yang. GeoDiff: Count model based differential expression and normalization on GeoMx RNA data. doi:10.18129/B9.bioc.GeoDiff, R package version 1.19.0, https://bioconductor.org/packages/GeoDiff.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("GeoDiff")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeoDiff")

Details

Package Archives

Follow Installation instructions to use this package in your R session.