GeneBreak
This is the development version of GeneBreak; for the stable release version, see GeneBreak.
All Bioconductor versions of GeneBreak
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2
Gene Break Detection
Bioconductor version: 3.24 · Package version: 1.43.0
Recurrent breakpoint gene detection on copy number aberration profiles.
Author: Evert van den Broek, Stef van Lieshout
Maintainer: Evert van den Broek <vandenbroek.evert at gmail.com>
Citation
From within R, enter citation("GeneBreak"):
Evert van den Broek, Stef van Lieshout. GeneBreak: Gene Break Detection. doi:10.18129/B9.bioc.GeneBreak, R package version 1.43.0, https://bioconductor.org/packages/GeneBreak.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("GeneBreak")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.43.0 |
| License | GPL-2 |
| URL | https://github.com/stefvanlieshout/GeneBreak |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.2 (R-3.2) (10 years) |
| Downloads rank | 755 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | CopyNumberVariation, DNASeq, Genetics, Sequencing, Software, Visualization, WholeGenome, aCGH |
| Package Short Url | https://bioconductor.org/packages/GeneBreak/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneBreak")| GeneBreak | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GeneBreak_1.43.0.tar.gz |
| Windows binary (x86_64) | GeneBreak_1.43.0.zip |
| macOS binary (arm64) | GeneBreak_1.43.0.tgz |
| macOS binary (x86_64) | GeneBreak_1.43.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GeneBreak |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneBreak |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges
Imports: graphics, methods