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GRmetrics

This is the development version of GRmetrics; for the stable release version, see GRmetrics.

Calculate growth-rate inhibition (GR) metrics


Bioconductor version: Development (3.19)

Functions for calculating and visualizing growth-rate inhibition (GR) metrics.

Author: Nicholas Clark

Maintainer: Nicholas Clark <nicholas.clark00 at gmail.com>, Mario Medvedovic <medvedm at ucmail.uc.edu>

Citation (from within R, enter citation("GRmetrics")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GRmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GRmetrics")
GRmetrics: an R package for calculation and visualization of dose-response metrics based on growth rate inhibition HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, CellBiology, ImmunoOncology, Software, TimeCourse, Visualization
Version 1.29.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL-3
Depends R (>= 4.0), SummarizedExperiment
Imports drc, plotly, ggplot2, S4Vectors, stats
System Requirements
URL https://github.com/uc-bd2k/GRmetrics
Bug Reports https://github.com/uc-bd2k/GRmetrics/issues
See More
Suggests knitr, rmarkdown, BiocStyle, tinytex
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GRmetrics_1.29.0.tar.gz
Windows Binary GRmetrics_1.29.0.zip
macOS Binary (x86_64) GRmetrics_1.29.0.tgz
macOS Binary (arm64) GRmetrics_1.29.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GRmetrics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GRmetrics
Bioc Package Browser https://code.bioconductor.org/browse/GRmetrics/
Package Short Url https://bioconductor.org/packages/GRmetrics/
Package Downloads Report Download Stats