GRmetrics

This is the development version of GRmetrics; for the stable release version, see GRmetrics.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Calculate growth-rate inhibition (GR) metrics

Bioconductor version: Development (3.24)

Functions for calculating and visualizing growth-rate inhibition (GR) metrics.

Author: Nicholas Clark

Maintainer: Nicholas Clark <nicholas.clark00 at gmail.com>, Mario Medvedovic <medvedm at ucmail.uc.edu>

Citation (from within R, enter citation("GRmetrics")):

Nicholas Clark. GRmetrics: Calculate growth-rate inhibition (GR) metrics. doi:10.18129/B9.bioc.GRmetrics, R package version 1.39.0, https://bioconductor.org/packages/GRmetrics.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("GRmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GRmetrics")

GRmetrics: an R package for calculation and visualization of dose-response metrics based on growth rate inhibition	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellBasedAssays, CellBiology, ImmunoOncology, Software, TimeCourse, Visualization
Version	1.39.0
In Bioconductor since	BioC 3.4 (R-3.3) (10 years)
License	GPL-3
Depends	R (>= 4.0), SummarizedExperiment
Imports	drc, plotly, ggplot2, S4Vectors, stats
System Requirements
URL	https://github.com/uc-bd2k/GRmetrics
Bug Reports	https://github.com/uc-bd2k/GRmetrics/issues

Suggests	knitr, rmarkdown, BiocStyle, tinytex
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GRmetrics_1.39.0.tar.gz
Windows Binary (x86_64)	GRmetrics_1.39.0.zip
macOS Binary (big-sur-x86_64)	GRmetrics_1.39.0.tgz
macOS Binary (sonoma-arm64)	GRmetrics_1.39.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GRmetrics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GRmetrics
Package Short Url	https://bioconductor.org/packages/GRmetrics/
Package Downloads Report	Download Stats