DEFormats

This is the development version of DEFormats; for the stable release version, see DEFormats.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Differential gene expression data formats converter

Bioconductor version: Development (3.24)

Convert between different data formats used by differential gene expression analysis tools.

Author: Andrzej Oleś

Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>

Citation (from within R, enter citation("DEFormats")):

Andrzej Oleś. DEFormats: Differential gene expression data formats converter. doi:10.18129/B9.bioc.DEFormats, R package version 1.41.0, https://bioconductor.org/packages/DEFormats.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("DEFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEFormats")

Differential gene expression data formats converter	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version	1.41.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL-3
Depends
Imports	checkmate, data.table, DESeq2, edgeR (>= 3.13.4), GenomicRanges, methods, S4Vectors, stats, SummarizedExperiment
System Requirements
URL	https://github.com/aoles/DEFormats
Bug Reports	https://github.com/aoles/DEFormats/issues

Suggests	BiocStyle (>= 1.8.0), knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me	regionReport
Suggests Me	DeeDeeExperiment, ideal
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DEFormats_1.41.0.tar.gz
Windows Binary (x86_64)	DEFormats_1.41.0.zip
macOS Binary (big-sur-x86_64)	DEFormats_1.41.0.tgz
macOS Binary (sonoma-arm64)	DEFormats_1.41.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DEFormats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DEFormats
Package Short Url	https://bioconductor.org/packages/DEFormats/
Package Downloads Report	Download Stats