CardinalIO

DOI: 10.18129/B9.bioc.CardinalIO  

This is the development version of CardinalIO; for the stable release version, see CardinalIO.

Read and write mass spectrometry imaging files

Bioconductor version: Development (3.19)

Fast and efficient reading and writing of mass spectrometry imaging data files. Supports imzML and Analyze 7.5 formats. Provides ontologies for mass spectrometry imaging.

Author: Kylie Ariel Bemis [aut, cre]

Maintainer: Kylie Ariel Bemis <k.bemis at northeastern.edu>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CardinalIO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CardinalIO")

 

HTML	R Script	Parsing and writing imzML files
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, ImagingMassSpectrometry, Infrastructure, MassSpectrometry, Software
Version	1.1.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.3), matter, ontologyIndex
Imports	methods, S4Vectors, stats, utils, tools
LinkingTo
Suggests	BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL	http://www.cardinalmsi.org
BugReports	https://github.com/kuwisdelu/CardinalIO/issues
Depends On Me
Imports Me	Cardinal
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CardinalIO_1.1.0.tar.gz
Windows Binary	CardinalIO_1.1.0.zip
macOS Binary (x86_64)	CardinalIO_1.1.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/CardinalIO
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CardinalIO
Bioc Package Browser	https://code.bioconductor.org/browse/CardinalIO/
Package Short Url	https://bioconductor.org/packages/CardinalIO/
Package Downloads Report	Download Stats