Bioconductor Developer Survey 2026 Now Open!

CAFE

This is the development version of CAFE; for the stable release version, see CAFE.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14

Chromosmal Aberrations Finder in Expression data


Bioconductor version: Development (3.24)

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at gmail.com>

Citation (from within R, enter citation("CAFE")):

Sander Bollen. CAFE: Chromosmal Aberrations Finder in Expression data. doi:10.18129/B9.bioc.CAFE, R package version 1.49.0, https://bioconductor.org/packages/CAFE.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("CAFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAFE")
Manual PDF R Script
Reference ManualPDF
NEWSText

Details

biocViews GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software
Version1.49.0
In Bioconductor sinceBioC 2.14 (R-3.1) (12.5 years)
License GPL-3
Depends R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
System Requirements
URL
See More
Suggests RUnit, BiocGenerics, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CAFE_1.49.0.tar.gz
Windows Binary (x86_64) CAFE_1.49.0.zip
macOS Binary (big-sur-x86_64) CAFE_1.49.0.tgz
macOS Binary (sonoma-arm64) CAFE_1.49.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/CAFE
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/CAFE
Package Short Url https://bioconductor.org/packages/CAFE/
Package Downloads ReportDownload Stats