DOI: 10.18129/B9.bioc.AllelicImbalance    

This is the development version of AllelicImbalance; for the stable release version, see AllelicImbalance.

Investigates Allele Specific Expression

Bioconductor version: Development (3.9)

Provides a framework for allelic specific expression investigation using RNA-seq data.

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at>

Citation (from within R, enter citation("AllelicImbalance")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("AllelicImbalance", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews Genetics, Infrastructure, Sequencing, Software
Version 1.21.2
In Bioconductor since BioC 2.13 (R-3.0) (5.5 years)
License GPL-3
Depends R (>= 3.2.0), grid, GenomicRanges(>= 1.31.8), SummarizedExperiment(>= 0.2.0), GenomicAlignments(>= 1.15.6)
Imports methods, BiocGenerics, AnnotationDbi, BSgenome(>= 1.47.3), VariantAnnotation(>= 1.25.11), Biostrings(>= 2.47.6), S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), Rsamtools(>= 1.99.3), GenomicFeatures(>= 1.31.3), Gviz, lattice, latticeExtra, gridExtra, seqinr, GenomeInfoDb, nlme
Suggests testthat,, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh37, BiocStyle, knitr, rmarkdown
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