daVis
This is the development version of daVis; to use it, please install the devel version of Bioconductor.
Visualization Of Differential Expression Analysis
Bioconductor version: Development (3.24)
This package contains utility functions to visualize the output from differential expression analysis. The input can be either a model or a list of top tables or a combination of the two. The model can be output from limma, edgeR or DESeq2.
Author: Katarzyna Gorczak [aut, cre], Laure Cougnaud [aut]
Maintainer: Katarzyna Gorczak <katarzyna.gorczak at openanalytics.eu>
citation("daVis")):Katarzyna Gorczak, Laure Cougnaud. daVis: Visualization Of Differential Expression Analysis. doi:10.18129/B9.bioc.daVis, R package version 0.99.4, https://bioconductor.org/packages/daVis.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("daVis")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("daVis")| daVis package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, DifferentialExpression, Microarray, RNASeq, Software, Visualization |
| Version | 0.99.4 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | GPL-3 |
| Depends | |
| Imports | edgeR, ggh4x, ggplot2, grDevices, limma, plyr, stats, utils, DESeq2, rlang, legendry, UpSetR |
| System Requirements | |
| URL | https://github.com/openanalytics/daVis |
| Bug Reports | https://github.com/openanalytics/daVis/issues |
See More
| Suggests | AnnotationDbi, Biobase, ggrepel, ggtext, knitr, methods, org.Mm.eg.db, pander, plotly, rmarkdown, S4Vectors, scales, testthat, tools, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | daVis_0.99.4.tar.gz |
| Windows Binary (x86_64) | daVis_0.99.4.zip |
| macOS Binary (big-sur-x86_64) | daVis_0.99.4.tgz |
| macOS Binary (sonoma-arm64) | daVis_0.99.4.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/daVis |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/daVis |
| Package Short Url | https://bioconductor.org/packages/daVis/ |
| Package Downloads Report | Download Stats |