combi
Compositional omics model based visual integration
Bioconductor version: 3.23 · Package version: 1.24.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This explorative ordination method combines quasi-likelihood estimation, compositional regression models and latent variable models for integrative visualization of several omics datasets. Both unconstrained and constrained integration are available. The results are shown as interpretable, compositional multiplots.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("combi")Details
| Maintainer | Stijn Hawinkel <stijn.hawinkel@psb.ugent.be> |
| Author | Stijn Hawinkel [cre, aut] (ORCID: <https://orcid.org/0000-0002-4501-5180>) |
| License | GPL-2 |
| Bug Reports | https://github.com/CenterForStatistics-UGent/combi/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DimensionReduction, Metabolomics, Metagenomics, Microbiome, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/combi/ |
Citation
From within R, enter citation("combi"):
Stijn Hawinkel. combi: Compositional omics model based visual integration. doi:10.18129/B9.bioc.combi, R package version 1.24.0, https://bioconductor.org/packages/combi.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | combi_1.24.0.tar.gz |
| Windows binary (x86_64) | combi_1.24.0.zip |
| macOS binary (arm64) | combi_1.24.0.tgz |
| macOS binary (x86_64) | combi_1.24.0.tgz |