arrayQuality

This is the released version of arrayQuality; for the devel version, see arrayQuality.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Assessing array quality on spotted arrays

Bioconductor version: Release (3.23)

Functions for performing print-run and array level quality assessment.

Author: Agnes Paquet and Jean Yee Hwa Yang <yeehwa at stat.berkeley.edu>

Maintainer: Agnes Paquet <paquetagnes at yahoo.com>

Citation (from within R, enter citation("arrayQuality")):

Agnes Paquet and Jean Yee Hwa Yang. arrayQuality: Assessing array quality on spotted arrays. doi:10.18129/B9.bioc.arrayQuality, R package version 1.90.0, https://bioconductor.org/packages/arrayQuality.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("arrayQuality")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Microarray, QualityControl, Software, TwoChannel, Visualization
Version	1.90.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	LGPL
Depends	R (>= 2.2.0)
Imports	graphics, grDevices, grid, gridBase, hexbin, limma, marray, methods, RColorBrewer, stats, utils
System Requirements
URL	http://arrays.ucsf.edu/

Suggests	mclust, MEEBOdata, HEEBOdata
Linking To
Enhances
Depends On Me
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	arrayQuality_1.90.0.tar.gz
Windows Binary (x86_64)	arrayQuality_1.90.0.zip
macOS Binary (big-sur-x86_64)	arrayQuality_1.90.0.tgz
macOS Binary (sonoma-arm64)	arrayQuality_1.90.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/arrayQuality
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/arrayQuality
Package Short Url	https://bioconductor.org/packages/arrayQuality/
Package Downloads Report	Download Stats