TBX20BamSubset
This is the released version of TBX20BamSubset; for the devel version, see TBX20BamSubset.
Subset of BAM files from the "TBX20" experiment
Bioconductor version: Release (3.23)
Dual transcriptional activator and repressor roles of TBX20 regulate adult cardiac structure and function. A subset of the RNA-Seq data.
Author: D. Bindreither
Maintainer: D. Bindreither <daniel.bindreither at gmail.com>
citation("TBX20BamSubset")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TBX20BamSubset")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TBX20BamSubset")| TBX20 RNA-Seq data subset | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, RNASeqData, SequencingData |
| Version | 1.48.0 |
| License | LGPL |
| Depends | Rsamtools(>= 1.9.8) |
| Imports | xtable |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | Rmmquant |
| Suggests Me | APAlyzer, magpie |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TBX20BamSubset_1.48.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TBX20BamSubset |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TBX20BamSubset |
| Package Short Url | https://bioconductor.org/packages/TBX20BamSubset/ |
| Package Downloads Report | Download Stats |