Rmagpie

This is the released version of Rmagpie; for the devel version, see Rmagpie.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

MicroArray Gene-expression-based Program In Error rate estimation

Bioconductor version: Release (3.23)

Microarray Classification is designed for both biologists and statisticians. It offers the ability to train a classifier on a labelled microarray dataset and to then use that classifier to predict the class of new observations. A range of modern classifiers are available, including support vector machines (SVMs), nearest shrunken centroids (NSCs)... Advanced methods are provided to estimate the predictive error rate and to report the subset of genes which appear essential in discriminating between classes.

Author: Camille Maumet <Rmagpie at gmail.com>, with contributions from C. Ambroise J. Zhu

Maintainer: Camille Maumet <Rmagpie at gmail.com>

Citation (from within R, enter citation("Rmagpie")):

Camille Maumet, with contributions from C. Ambroise J. Zhu. Rmagpie: MicroArray Gene-expression-based Program In Error rate estimation. doi:10.18129/B9.bioc.Rmagpie, R package version 1.68.0, https://bioconductor.org/packages/Rmagpie.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rmagpie")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rmagpie")

Rmagpie Examples	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Classification, Microarray, Software
Version	1.68.0
In Bioconductor since	BioC 2.4 (R-2.9) (17.5 years)
License	GPL (>= 3)
Depends	R (>= 2.6.1), Biobase (>= 2.5.5)
Imports	Biobase (>= 2.5.5), e1071, graphics, grDevices, kernlab, methods, pamr, stats, utils
System Requirements
URL	http://www.bioconductor.org/

Suggests	xtable
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rmagpie_1.68.0.tar.gz
Windows Binary (x86_64)	Rmagpie_1.68.0.zip
macOS Binary (big-sur-x86_64)	Rmagpie_1.68.0.tgz
macOS Binary (sonoma-arm64)	Rmagpie_1.68.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rmagpie
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rmagpie
Package Short Url	https://bioconductor.org/packages/Rmagpie/
Package Downloads Report	Download Stats