Rega
This is the development version of Rega; to use it, please install the devel version of Bioconductor.
R Interface to European Genome-Phenome Archive
Bioconductor version: Development (3.23)
The European Genome-phenome Archive (EGA) provides long-term storage and controlled sharing of personally identifiable genetic data. The Rega package offers a streamlined and extensible R interface to the EGA API, facilitating the programmatic upload of metadata. GEO-like Excel submission template is provided as a default method of organizing submission metadata.
Author: Igor Cervenka [aut, cre]
, Athimed El Taher [aut]
, Robert Ivanek [aut]
Maintainer: Igor Cervenka <igor.cervenka at unibas.ch>
citation("Rega")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Rega")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rega")| The Rega User Guide | HTML | R Script |
| Reference Manual |
Details
| biocViews | Infrastructure, Software, ThirdPartyClient |
| Version | 0.99.6 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | Artistic-2.0 |
| Depends | R (>= 4.6) |
| Imports | askpass, httr2, jsonlite, jsonvalidate, keyring, readxl, rlang, stringr, tibble, tidyr, validate, yaml |
| System Requirements | |
| URL | https://github.com/ivanek/Rega |
| Bug Reports | https://github.com/ivanek/Rega/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rega_0.99.6.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | Rega_0.99.6.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rega |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rega |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rega/ |
| Package Short Url | https://bioconductor.org/packages/Rega/ |
| Package Downloads Report | Download Stats |