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PostChicago

This is the development version of PostChicago; to use it, please install the devel version of Bioconductor.

PostChicago - visualization and integration of Capture-(Hi)C data

DOI: 10.18129/B9.bioc.PostChicago

Bioconductor version: Development (3.24)

PostCHiCAGO (stylized from here as PostChicago) is a toolbox for visualising and assessing the output from the CHiCAGO pipeline (SOURCE). The plots created by PostChicago show reads or CHiCAGO scores over different regions. PostChicago can integrate different experiments with other types of datasets and compare separate conditions.

Author: Angelika Feldmann [aut, cre] ORCID: 0000-0001-7094-8081 , Samuel Krall [aut], Belinda Blum [aut]

Maintainer: Angelika Feldmann <angelika.feldmann at dkfz-heidelberg.de>

Citation (from within R, enter citation("PostChicago")):

Angelika Feldmann, Samuel Krall, Belinda Blum. PostChicago: PostChicago - visualization and integration of Capture-(Hi)C data. doi:10.18129/B9.bioc.PostChicago, R package version 0.99.4, https://bioconductor.org/packages/PostChicago.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("PostChicago")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PostChicago")

Details

Package Archives

Follow Installation instructions to use this package in your R session.