PREDA

This is the released version of PREDA; for the devel version, see PREDA.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9

Position Related Data Analysis

Bioconductor version: Release (3.23)

Package for the position related analysis of quantitative functional genomics data.

Author: Francesco Ferrari <francesco.ferrari at ifom.eu>

Maintainer: Francesco Ferrari <francesco.ferrari at ifom.eu>

Citation (from within R, enter citation("PREDA")):

Francesco Ferrari. PREDA: Position Related Data Analysis. doi:10.18129/B9.bioc.PREDA, R package version 1.58.0, https://bioconductor.org/packages/PREDA.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PREDA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PREDA")

PREDA S4-classes	PDF
PREDA tutorial	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CopyNumberVariation, GeneExpression, Genetics, Software
Version	1.58.0
In Bioconductor since	BioC 2.9 (R-2.14) (15 years)
License	GPL-2
Depends	R (>= 2.9.0), Biobase, lokern (>= 1.0.9), multtest, stats, methods, annotate
Imports
System Requirements
URL

Suggests	quantsmooth, qvalue, limma, caTools, affy, PREDAsampledata
Linking To
Enhances	Rmpi, rsprng
Depends On Me	PREDAsampledata
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PREDA_1.58.0.tar.gz
Windows Binary (x86_64)	PREDA_1.58.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	PREDA_1.58.0.tgz
macOS Binary (sonoma-arm64)	PREDA_1.58.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PREDA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PREDA
Package Short Url	https://bioconductor.org/packages/PREDA/
Package Downloads Report	Download Stats