MultiDataSet

This is the released version of MultiDataSet; for the devel version, see MultiDataSet.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Implementation of MultiDataSet and ResultSet

Bioconductor version: Release (3.23)

Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and ResultSet. MultiDataSet is designed for integrating multi omics data sets and ResultSet is a container for omics results. This package contains base classes for MEAL and rexposome packages.

Author: Carlos Ruiz-Arenas [aut, cre], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]

Maintainer: Xavier Escrib<c3><a0> Montagut <xavier.escriba at isglobal.org>

Citation (from within R, enter citation("MultiDataSet")):

Carlos Ruiz-Arenas, Carles Hernandez-Ferrer, Juan R. Gonzalez. MultiDataSet: Implementation of MultiDataSet and ResultSet. doi:10.18129/B9.bioc.MultiDataSet, R package version 1.40.0, https://bioconductor.org/packages/MultiDataSet.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MultiDataSet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultiDataSet")

Adding a new type of data to MultiDataSet objects	HTML	R Script
Introduction to MultiDataSet	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataRepresentation, Software
Version	1.40.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	file LICENSE
Depends	R (>= 4.1), Biobase
Imports	BiocGenerics, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, methods, utils, ggplot2, ggrepel, qqman, limma
System Requirements
URL

Suggests	brgedata, minfi, minfiData, knitr, rmarkdown, testthat, omicade4, iClusterPlus, GEOquery, MultiAssayExperiment, BiocStyle, RaggedExperiment
Linking To
Enhances
Depends On Me	MEAL
Imports Me	biosigner, omicRexposome, phenomis, ropls
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MultiDataSet_1.40.0.tar.gz
Windows Binary (x86_64)	MultiDataSet_1.40.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	MultiDataSet_1.40.0.tgz
macOS Binary (sonoma-arm64)	MultiDataSet_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MultiDataSet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MultiDataSet
Package Short Url	https://bioconductor.org/packages/MultiDataSet/
Package Downloads Report	Download Stats