MinimumDistance
A Package for De Novo CNV Detection in Case-Parent Trios
Bioconductor version: 3.23 · Package version: 1.56.0
Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MinimumDistance")Details
| Maintainer | Robert Scharpf <rscharpf@jhu.edu> |
| Author | Robert B Scharpf and Ingo Ruczinski |
| License | Artistic-2.0 |
| Downloads rank | 468 |
| Source branch | RELEASE_3_23 |
| biocViews | CopyNumberVariation, Microarray, SNP, Software |
Documentation
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Dependencies
Depends: R (>= 3.5.0), VanillaICE (>= 1.47.1)
Imports: methods, BiocGenerics, MatrixGenerics, Biobase, S4Vectors (>= 0.23.18), IRanges, Seqinfo, GenomicRanges (>= 1.17.16), SummarizedExperiment (>= 1.15.4), oligoClasses, DNAcopy, ff, foreach, matrixStats, lattice, data.table, grid, stats, utils
Suggests: human610quadv1bCrlmm (>= 1.0.3), BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19, RUnit