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LiebermanAidenHiC2009

This is the released version of LiebermanAidenHiC2009; for the devel version, see LiebermanAidenHiC2009.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)


Bioconductor version: Release (3.23)

This package provides data that were presented in the article "Comprehensive mapping of long-range interactions reveals folding principles of the human genome", Science 2009 Oct 9;326(5950):289-93. PMID: 19815776

Author: Wolfgang Huber, Felix Klein

Maintainer: Felix Klein <fklein at embl.de>

Citation (from within R, enter citation("LiebermanAidenHiC2009")):

Wolfgang Huber, Felix Klein. LiebermanAidenHiC2009: Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009). doi:10.18129/B9.bioc.LiebermanAidenHiC2009, R package version 0.50.0, https://bioconductor.org/packages/LiebermanAidenHiC2009.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LiebermanAidenHiC2009")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LiebermanAidenHiC2009")
Exploration of HiC data PDF R Script
Reference ManualPDF

Details

biocViews ChIPSeqData, ChipOnChipData, DNASeqData, ENCODE, ExperimentData, GEO, Genome, NCI, SequencingData, SmallRNAData, miRNAData
Version0.50.0
In Bioconductor sinceBioC 2.9 (R-2.14) (15 years)
License LGPL
Depends KernSmooth, IRanges
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LiebermanAidenHiC2009_0.50.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/LiebermanAidenHiC2009
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/LiebermanAidenHiC2009
Package Short Url https://bioconductor.org/packages/LiebermanAidenHiC2009/
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