GloScope
This is the released version of GloScope; for the devel version, see GloScope.
Population-level Representation on scRNA-Seq data
Bioconductor version: Release (3.23)
This package aims at representing and summarizing the entire single-cell profile of a sample. It allows researchers to perform important bioinformatic analyses at the sample-level such as visualization and quality control. The main functions Estimate sample distribution and calculate statistical divergence among samples, and visualize the distance matrix through MDS plots.
Author: Elizabeth Purdom [aut, cre], William Torous [aut] 
, Hao Wang [aut] , Boying Gong [aut]
Maintainer: Elizabeth Purdom <epurdom at stat.berkeley.edu>
citation("GloScope")):Elizabeth Purdom, William Torous, Hao Wang, Boying Gong. GloScope: Population-level Representation on scRNA-Seq data. doi:10.18129/B9.bioc.GloScope, R package version 2.2.0, https://bioconductor.org/packages/GloScope.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GloScope")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GloScope")| GloScope | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, QualityControl, RNASeq, Sequencing, SingleCell, Software |
| Version | 2.2.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (3 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.4.0) |
| Imports | utils, stats, MASS, mclust, ggplot2, RANN, FNN, BiocParallel, mvnfast, SingleCellExperiment, rlang, RColorBrewer, pheatmap, vegan, cluster, boot, permute |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/epurdom/GloScope/issues |
See More
| Suggests | BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, zellkonverter |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GloScope_2.2.0.tar.gz |
| Windows Binary (x86_64) | GloScope_2.2.0.zip |
| macOS Binary (big-sur-x86_64) | GloScope_2.2.0.tgz |
| macOS Binary (sonoma-arm64) | GloScope_2.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GloScope |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GloScope |
| Package Short Url | https://bioconductor.org/packages/GloScope/ |
| Package Downloads Report | Download Stats |