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GCPtools

This is the development version of GCPtools; to use it, please install the devel version of Bioconductor.

Tools for working with gcloud and gsutil


Bioconductor version: Development (3.22)

Lower-level functionality to interface with Google Cloud Platform tools. 'gcloud' and 'gsutil' are both supported. The functionality provided centers around utilities for the AnVIL platform.

Author: Marcel Ramos [aut, cre] ORCID iD ORCID: 0000-0002-3242-0582 , Nitesh Turaga [aut], Martin Morgan [aut] ORCID iD ORCID: 0000-0002-5874-8148

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("GCPtools")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GCPtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GCPtools")
GCPtools Introduction HTML R Script
Reference Manual PDF

Details

biocViews DataImport, Infrastructure, Software, ThirdPartyClient
Version 0.99.0
In Bioconductor since BioC 3.22 (R-4.5)
License Artistic-2.0
Depends R (>= 4.5.0)
Imports AnVILBase, BiocBaseUtils, dplyr, httr, rlang, tibble, tidyr, utils
System Requirements gsutil, gcloud
URL https://github.com/Bioconductor/GCPtools
Bug Reports https://github.com/Bioconductor/GCPtools/issues
See More
Suggests BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GCPtools_0.99.0.tar.gz
Windows Binary (x86_64) GCPtools_0.99.0.zip
macOS Binary (x86_64) GCPtools_0.99.0.tgz
macOS Binary (arm64) GCPtools_0.99.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GCPtools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GCPtools
Bioc Package Browser https://code.bioconductor.org/browse/GCPtools/
Package Short Url https://bioconductor.org/packages/GCPtools/
Package Downloads Report Download Stats