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EMMA

This is the development version of EMMA; to use it, please install the devel version of Bioconductor.

EMMA: Enrichment Methods Matter for enabling fully reproducible and provenance-aware pathway analysis

DOI: 10.18129/B9.bioc.EMMA

Bioconductor version: Development (3.24)

EMMA is a package that provides a provenance-aware execution framework for functional enrichment analyses. It allows users to run enrichment analyses using existing tools and workflows while explicitly capturing analytical parameters during runtime, and returns the native enrichment results output together with structured metadata.

Author: Najla Abassi [aut, cre] ORCID: 0000-0001-8357-0938 , Annekathrin Nedwed [aut] ORCID: 0000-0002-2475-4945 , Federico Marini [aut] ORCID: 0000-0003-3252-7758

Maintainer: Najla Abassi <abassi.nejla96 at gmail.com>

Citation (from within R, enter citation("EMMA")):

Najla Abassi, Annekathrin Nedwed, Federico Marini. EMMA: EMMA: Enrichment Methods Matter for enabling fully reproducible and provenance-aware pathway analysis. doi:10.18129/B9.bioc.EMMA, R package version 0.99.6, https://bioconductor.org/packages/EMMA.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("EMMA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EMMA")

Details

Package Archives

Follow Installation instructions to use this package in your R session.