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DuckDBSpatial

This is the development version of DuckDBSpatial; to use it, please install the devel version of Bioconductor.

DuckDB-Backed Spatial Data Structures

DOI: 10.18129/B9.bioc.DuckDBSpatial

Bioconductor version: Development (3.24)

Provides DuckDB-backed implementations of spatial data structures for efficient out-of-memory operations on large spatial datasets. The package includes 68 sf-compatible spatial methods (st_intersects, st_contains, st_within, etc.) and GeoParquet 1.0 I/O support via writeGeoParquet(). Ideal for spatial analysis, genomic interval analysis, and integration with BiocDuckDB for MultiAssaySpatialExperiment workflows requiring memory-efficient operations on large datasets.

Author: Patrick Aboyoun [aut, cre], Genentech, Inc. [cph]

Maintainer: Patrick Aboyoun <aboyounp at gene.com>

Citation (from within R, enter citation("DuckDBSpatial")):

Patrick Aboyoun. DuckDBSpatial: DuckDB-Backed Spatial Data Structures. doi:10.18129/B9.bioc.DuckDBSpatial, R package version 0.99.7, https://bioconductor.org/packages/DuckDBSpatial.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("DuckDBSpatial")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DuckDBSpatial")

Details

Package Archives

Follow Installation instructions to use this package in your R session.