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DAssemble

This is the development version of DAssemble; to use it, please install the devel version of Bioconductor.

Ensemble Models for Differential Analysis

DOI: 10.18129/B9.bioc.DAssemble

Bioconductor version: Development (3.24)

The DAssemble package implements an ensemble framework for differential-abundance and differential-expression analysis across bulk RNA-seq, single-cell RNA-seq, and microbiome studies. It wraps a collection of popular DA/DE methods as core methods and combines them via Cauchy Combination Tests (CCT), optionally augmented by simple enhancers such as Wilcoxon, Kolmogorov–Smirnov, and presence–absence logistic regression.

Author: Ziyu Liu [aut], Nalin Arora [aut, cre] ORCID: 0009-0009-1340-688X , Chuxuan Gao [aut], Himel Mallick [aut]

Maintainer: Nalin Arora <naa4050 at med.cornell.edu>

Citation (from within R, enter citation("DAssemble")):

Ziyu Liu, Nalin Arora, Chuxuan Gao, Himel Mallick. DAssemble: Ensemble Models for Differential Analysis. doi:10.18129/B9.bioc.DAssemble, R package version 0.99.4, https://bioconductor.org/packages/DAssemble.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("DAssemble")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DAssemble")

Details

Package Archives

Follow Installation instructions to use this package in your R session.