CellMapper
This is the released version of CellMapper; for the devel version, see CellMapper.
All Bioconductor versions of CellMapper
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4
Predict genes expressed selectively in specific cell types
Bioconductor version: 3.23 · Package version: 1.38.0
Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. Can make accurate predictions using publicly available expression data, even when a cell type has not been isolated before.
Author: Brad Nelms
Maintainer: Brad Nelms <bnelms.research at gmail.com>
Citation
From within R, enter citation("CellMapper"):
Brad Nelms. CellMapper: Predict genes expressed selectively in specific cell types. doi:10.18129/B9.bioc.CellMapper, R package version 1.38.0, https://bioconductor.org/packages/CellMapper.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CellMapper")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.38.0 |
| License | Artistic-2.0 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| Downloads rank | 1375 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, Microarray, Software |
| Package Short Url | https://bioconductor.org/packages/CellMapper/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CellMapper")| CellMapper Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | CellMapper_1.38.0.tar.gz |
| Windows binary (x86_64) | CellMapper_1.38.0.zip |
| macOS binary (arm64) | CellMapper_1.38.0.tgz |
| macOS binary (x86_64) | CellMapper_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CellMapper |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CellMapper |
| Package Downloads Report | Download Stats |
Dependencies
Depends: S4Vectors, methods
Imports: stats, utils
Suggests: CellMapperData, Biobase, HumanAffyData, ALL, BiocStyle, ExperimentHub
Reverse dependencies
Depends On Me (1): CellMapperData