CENTREannotation
This is the development version of CENTREannotation; to use it, please install the devel version of Bioconductor.
Hub package for the annotation data of CENTRE (GENCODE v40 and SCREEN v3)
Bioconductor version: Development (3.22)
This is an AnnotationHub package for the CENTRE Bioconductor software package. It contains the GENCODE version 40 annotation and ENCODE Registry of candidate cis-regulatory elements (cCREs) version 3. All for Human hg38 genome.
Author: Sara Lopez Ruiz de Vargas [aut, cre]
Maintainer: Sara Lopez Ruiz de Vargas <lopez_s at molgen.mpg.de>
citation("CENTREannotation")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CENTREannotation")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CENTREannotation")| CENTRE AnnotationHub datasets | HTML | R Script |
| Reference Manual |
Details
| biocViews | AnnotationData, AnnotationHub |
| Version | 0.99.1 |
| License | Artistic-2.0 |
| Depends | R (>= 4.5.0) |
| Imports | AnnotationHub, RSQLite, DBI, BiocGenerics, methods |
| System Requirements | |
| URL | https://github.com/slrvv/CENTREannotation |
| Bug Reports | https://github.com/slrvv/CENTREannotation/issues |
See More
| Suggests | knitr, rmarkdown, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CENTREannotation_0.99.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/CENTREannotation/ |
| Package Downloads Report | Download Stats |