BloodCancerMultiOmics2017

This is the released version of BloodCancerMultiOmics2017; for the devel version, see BloodCancerMultiOmics2017.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

Bioconductor version: Release (3.23)

The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.

Author: Małgorzata Oleś, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber

Maintainer: Małgorzata Oleś <dr.malgorzata.oles at gmail.com>

Citation (from within R, enter citation("BloodCancerMultiOmics2017")):

Małgorzata Oleś, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber. BloodCancerMultiOmics2017: "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis. doi:10.18129/B9.bioc.BloodCancerMultiOmics2017, R package version 1.32.0, https://bioconductor.org/packages/BloodCancerMultiOmics2017.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BloodCancerMultiOmics2017")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BloodCancerMultiOmics2017")

BloodCancerMultiOmics2017 - data overview	HTML	R Script
BloodCancerMultiOmics2017	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CancerData, ExperimentData, LeukemiaCancerData, ReproducibleResearch
Version	1.32.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	LGPL (>= 3)
Depends	R (>= 3.5.0)
Imports	beeswarm, Biobase, DESeq2, devtools, dplyr, ggdendro, ggplot2, glmnet, graphics, grDevices, grid, gtable, ipflasso, methods, RColorBrewer, reshape2, scales, stats, SummarizedExperiment, survival, tibble
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt, broom, colorspace, cowplot, dendsort, doParallel, foreach, forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin, limma, magrittr, Matrix, maxstat, nat, org.Hs.eg.db, pheatmap, piano, readxl, Rtsne, tidyr, xtable
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BloodCancerMultiOmics2017_1.32.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/BloodCancerMultiOmics2017
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BloodCancerMultiOmics2017
Package Short Url	https://bioconductor.org/packages/BloodCancerMultiOmics2017/
Package Downloads Report	Download Stats