BaseSpaceR

This is the released version of BaseSpaceR; for the devel version, see BaseSpaceR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

R SDK for BaseSpace RESTful API

Bioconductor version: Release (3.23)

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author: Adrian Alexa

Maintainer: Jared O'Connell <joconnell at illumina.com>

Citation (from within R, enter citation("BaseSpaceR")):

Adrian Alexa. BaseSpaceR: R SDK for BaseSpace RESTful API. doi:10.18129/B9.bioc.BaseSpaceR, R package version 1.56.0, https://bioconductor.org/packages/BaseSpaceR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BaseSpaceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BaseSpaceR")

BaseSpaceR	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software
Version	1.56.0
In Bioconductor since	BioC 2.12 (R-3.0) (13.5 years)
License	Apache License 2.0
Depends	R (>= 2.15.0), RCurl, RJSONIO
Imports	methods
System Requirements
URL

Suggests	RUnit, IRanges, Rsamtools
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BaseSpaceR_1.56.0.tar.gz
Windows Binary (x86_64)	BaseSpaceR_1.56.0.zip
macOS Binary (big-sur-x86_64)	BaseSpaceR_1.56.0.tgz
macOS Binary (sonoma-arm64)	BaseSpaceR_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BaseSpaceR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BaseSpaceR
Package Short Url	https://bioconductor.org/packages/BaseSpaceR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.23	Source Archive