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BCRANK

This is the released version of BCRANK; for the devel version, see BCRANK.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Predicting binding site consensus from ranked DNA sequences

DOI: 10.18129/B9.bioc.BCRANK

Bioconductor version: Release (3.23)

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

Citation (from within R, enter citation("BCRANK")):

Adam Ameur. BCRANK: Predicting binding site consensus from ranked DNA sequences. doi:10.18129/B9.bioc.BCRANK, R package version 1.74.0, https://bioconductor.org/packages/BCRANK.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BCRANK")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BCRANK")

Details

Package Archives

Follow Installation instructions to use this package in your R session.