BAGS
This is the released version of BAGS; for the devel version, see BAGS.
A Bayesian Approach for Geneset Selection
Bioconductor version: Release (3.23)
R package providing functions to perform geneset significance analysis over simple cross-sectional data between 2 and 5 phenotypes of interest.
Author: Alejandro Quiroz-Zarate
Maintainer: Alejandro Quiroz-Zarate <aquiroz at jimmy.harvard.edu>
citation("BAGS")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BAGS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BAGS")| BAGS: A Bayesian Approach for Geneset Selection. | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Bayesian, Software |
| Version | 2.51.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (13 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), breastCancerVDX, Biobase |
| Imports | |
| System Requirements | |
| URL |
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BAGS_2.51.0.tar.gz |
| Windows Binary (x86_64) | BAGS_2.51.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | BAGS_2.51.0.tgz |
| macOS Binary (sonoma-arm64) | BAGS_2.51.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BAGS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BAGS |
| Bioc Package Browser | https://code.bioconductor.org/browse/BAGS/ |
| Package Short Url | https://bioconductor.org/packages/BAGS/ |
| Package Downloads Report | Download Stats |