AGDEX
This is the released version of AGDEX; for the devel version, see AGDEX.
Agreement of Differential Expression Analysis
Bioconductor version: Release (3.23)
A tool to evaluate agreement of differential expression for cross-species genomics
Author: Stan Pounds <stanley.pounds at stjude.org>; Cuilan Lani Gao <cuilan.gao at stjude.org>
Maintainer: Cuilan lani Gao <cuilan.gao at stjude.org>
citation("AGDEX")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AGDEX")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AGDEX")| AGDEX.pdf | R Script | |
| Reference Manual |
Details
| biocViews | GeneExpression, Genetics, Microarray, Software |
| Version | 1.60.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (15 years) |
| License | GPL Version 2 or later |
| Depends | R (>= 2.10), Biobase, GSEABase |
| Imports | stats |
| System Requirements | |
| URL |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AGDEX_1.60.0.tar.gz |
| Windows Binary (x86_64) | AGDEX_1.60.0.zip |
| macOS Binary (big-sur-x86_64) | AGDEX_1.60.0.tgz |
| macOS Binary (sonoma-arm64) | AGDEX_1.60.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AGDEX |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AGDEX |
| Bioc Package Browser | https://code.bioconductor.org/browse/AGDEX/ |
| Package Short Url | https://bioconductor.org/packages/AGDEX/ |
| Package Downloads Report | Download Stats |