Registration and Call for Abstracts Open for Bioc2024

Practical DNA Microarray Analysis

Heidelberg and Berlin 2003

Axel Benner1, Benedikt Brors2, Anja von Heydebreck3, Wolfgang Huber4, Ulrich Mansmann5, Florian Markowetz3, Jörg Rahnenführer6, Rainer Spang3

1 German Cancer Research Center, Heidelberg, Central Unit Biostatistics;
2 German Cancer Research Center, Heidelberg, Dep. Intelligent Bioinformatics Systems;
3 Max-Planck-Institute for Molecular Genetics, Berlin, Dep. Computational Molecular Biology;
4 German Cancer Research Center, Heidelberg, Dep. Molecular Genome Analysis;
5 Univ. of Heidelberg, Institute for Medical Biometry;
6 Max-Plack-Institute for Informatics, Saarbrücken.

Schedule

Monday
09.00-10.30 First analysis steps Wolfgang Huber
11.00-12.30 Differential gene expression Anja von Heydebreck
13.30-14.30 First steps in R Florian Markowetz
14.45-17.00 Exercises: Exploring cDNA data Wolfgang Huber
Tuesday
09.00-10.30 Exploratory data analysis Jörg Rahnenführer
10.30-12.00 Annotation Benedikt Brors
13.30-14.30 BioConductor Wolfgang Huber
14.45-17.00 Exercises: 2x2 factorial design Wolfgang Huber
Wednesday
09.00-10.15 Molecular Diagnosis Rainer Spang
10.15-11.00 Classification by Support Vector Machines Florian Markowetz
11.00-12.00 Resampling and the bootstrap Axel Benner
13.30-17.00 Exercises: classification Florian Markowetz
Thursday
09.00-11.00 Design of microarray experiments Ulrich Mansmann
11.00-12.00 Model Assessment and Selection Axel Benner
12.00-12.30 Screening by ROC curve analysis Axel Benner
13.30-17.00 Exercises: Model selection, Bootstrap Ulrich Mansmann
Axel Benner

Course format

ca. 15 students from laboratories that work with microarrays. In the mornings, theory lectures; in the afternoons, hands-on-experience in computer-classes with real data sets (public data, or students' own data), using R/Bioconductor.

Course dates

Berlin, Jan 27-30; Heidelberg Mar 24-27; Heidelberg Oct 07-10; Berlin Nov 10-13.

Course homepage

http://compdiag.molgen.mpg.de/ngfn/. There will be further courses in 2004 which can be found on the same website.