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GIT Logs
This is a list of recent commits to git.bioconductor.org, the master(development) branch of the Bioconductor GIT repository.
This list is also available as an RSS feed (master branch), and RSS feed (release branch)
Package: TrajectoryGeometry
Commit: eab6045dc6804e5f712446bea2f938d94e45b2c3
Author: AnnaLaddach <annaladdach@gmail.com>
Date: 2020-11-26 10:15:30 +0000
Commit message:
Commit: eab6045dc6804e5f712446bea2f938d94e45b2c3
Author: AnnaLaddach <annaladdach@gmail.com>
Date: 2020-11-26 10:15:30 +0000
Commit message:
R version dependency changed
Package: ceRNAnetsim
Commit: e1ddfb39c64f712f70f4a060fb76f779fe6a0a7f
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-26 11:17:09 +0300
Commit message:
Commit: e1ddfb39c64f712f70f4a060fb76f779fe6a0a7f
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-26 11:17:09 +0300
Commit message:
DESCRIPTION
Package: ceRNAnetsim
Commit: 4ddd9985a7d14a8102132b6babf0cabf2dc34545
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-26 11:02:07 +0300
Commit message:
Commit: 4ddd9985a7d14a8102132b6babf0cabf2dc34545
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-26 11:02:07 +0300
Commit message:
version check
Package: ceRNAnetsim
Commit: 0f0db69ad4fcd4518be15166156c66a23a43652d
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-25 15:08:40 +0300
Commit message:
Commit: 0f0db69ad4fcd4518be15166156c66a23a43652d
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-25 15:08:40 +0300
Commit message:
test to solve Illegal version bump
Package: ceRNAnetsim
Commit: 116e6f7060efffe4ade911dd4490f81dd51f7535
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-25 15:03:08 +0300
Commit message:
Commit: 116e6f7060efffe4ade911dd4490f81dd51f7535
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-25 15:03:08 +0300
Commit message:
version issue
Package: ceRNAnetsim
Commit: db798e115060028b03711974883ffd53764328ab
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-25 14:49:34 +0300
Commit message:
Commit: db798e115060028b03711974883ffd53764328ab
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-25 14:49:34 +0300
Commit message:
description error
Package: casper
Commit: 25e48f6b93a23dfc935b3cca9b2e0895323ecf4f
Author: davidrusi <rosselldavid@gmail.com>
Date: 2020-11-26 09:32:53 +0100
Commit message:
Commit: 25e48f6b93a23dfc935b3cca9b2e0895323ecf4f
Author: davidrusi <rosselldavid@gmail.com>
Date: 2020-11-26 09:32:53 +0100
Commit message:
bumped version number
Package: miRSM
Commit: 1c19d4da297bc2f2977dc2cfff689aacef67ac62
Author: zhangjunpeng411 <zhangjunpeng_411@yahoo.com>
Date: 2020-11-26 16:02:53 +0800
Commit message:
Commit: 1c19d4da297bc2f2977dc2cfff689aacef67ac62
Author: zhangjunpeng411 <zhangjunpeng_411@yahoo.com>
Date: 2020-11-26 16:02:53 +0800
Commit message:
Update
Package: miRSM
Commit: 5fa0f031c69f2d803aead3c6adc58a7590f6c14f
Author: zhangjunpeng411 <zhangjunpeng_411@yahoo.com>
Date: 2020-11-15 08:23:25 +0800
Commit message:
Commit: 5fa0f031c69f2d803aead3c6adc58a7590f6c14f
Author: zhangjunpeng411 <zhangjunpeng_411@yahoo.com>
Date: 2020-11-15 08:23:25 +0800
Commit message:
Update
Package: csaw
Commit: 04c8109c832da385b923124845fcfbdc59836260
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-26 00:01:47 -0800
Commit message:
Commit: 04c8109c832da385b923124845fcfbdc59836260
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-26 00:01:47 -0800
Commit message:
Got rid of invalid links.
Package: csaw
Commit: 3d15672de27daba35d357f80996bb3b62ffc776a
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 23:49:30 -0800
Commit message:
Commit: 3d15672de27daba35d357f80996bb3b62ffc776a
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 23:49:30 -0800
Commit message:
Redirect users to the book for documentation.
Package: csaw
Commit: 58343f09e4c6d6f86ae2c130f4e639119152b59c
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-09 13:16:05 -0800
Commit message:
Commit: 58343f09e4c6d6f86ae2c130f4e639119152b59c
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-09 13:16:05 -0800
Commit message:
Moved AnnotationDbi, GenomicFeatures to Suggests.
Package: chipseqDB
Commit: 38462bb57a15a6cb6823d3affa1912396fe84563
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 23:50:05 -0800
Commit message:
Commit: 38462bb57a15a6cb6823d3affa1912396fe84563
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 23:50:05 -0800
Commit message:
Redirect to the csawBook.
Package: csawUsersGuide
Commit: 8dd056e6b333bd107cabb2ef4282bca7b2b81ab0
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 23:26:22 -0800
Commit message:
Commit: 8dd056e6b333bd107cabb2ef4282bca7b2b81ab0
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 23:26:22 -0800
Commit message:
Purged content, added redirection to the new csawBook.
Package: scran
Commit: 7ba644f0d7a503a48114acda8beede27934ae5ad
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 22:33:44 -0800
Commit message:
Commit: 7ba644f0d7a503a48114acda8beede27934ae5ad
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 22:33:44 -0800
Commit message:
Cut out a lot of redundant C++ code.
Package: basilisk
Commit: 917422249c59de49cc5f207b2c13145e01e16adc
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 21:53:30 -0800
Commit message:
Commit: 917422249c59de49cc5f207b2c13145e01e16adc
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 21:53:30 -0800
Commit message:
Mention some legal stuff about ToS.
Package: basilisk.utils
Commit: 09d5eadd7a2ac8ed4364ff4418917fb5deba2adc
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 21:42:44 -0800
Commit message:
Commit: 09d5eadd7a2ac8ed4364ff4418917fb5deba2adc
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 21:42:44 -0800
Commit message:
Simplified the installer caching behavior.
Package: batchelor
Commit: 7860135933718afe095986a830aa1cebc8a8a623
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 21:02:40 -0800
Commit message:
Commit: 7860135933718afe095986a830aa1cebc8a8a623
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-25 21:02:40 -0800
Commit message:
Improved the error message for checkBatchConsistency. Closes #22.
Package: Rsubread
Commit: 113a96059b3a74e157e3f9be9dd18d63b4577170
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2020-11-26 16:01:32 +1100
Commit message:
Commit: 113a96059b3a74e157e3f9be9dd18d63b4577170
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2020-11-26 16:01:32 +1100
Commit message:
nearly finished parallel gzip and bam sorting.
Package: spatialHeatmap
Commit: e4a268da92d3dd24a04ceccfc1f86af0278e509d
Author: jianhaizhang <jzhan067@ucr.edu>
Date: 2020-11-25 20:42:47 -0800
Commit message:
Commit: e4a268da92d3dd24a04ceccfc1f86af0278e509d
Author: jianhaizhang <jzhan067@ucr.edu>
Date: 2020-11-25 20:42:47 -0800
Commit message:
Small change.
Package: spatialHeatmap
Commit: 7dec30667c949f4afbf69725b1dc5af7451e54ed
Author: jianhaizhang <jzhan067@ucr.edu>
Date: 2020-11-25 20:23:45 -0800
Commit message:
Commit: 7dec30667c949f4afbf69725b1dc5af7451e54ed
Author: jianhaizhang <jzhan067@ucr.edu>
Date: 2020-11-25 20:23:45 -0800
Commit message:
Bump version.
Package: spatialHeatmap
Commit: 1ca68ee7f828bc3cc82de48928eb9a95b2638e00
Author: jianhaizhang <jzhan067@ucr.edu>
Date: 2020-11-25 20:22:32 -0800
Commit message:
Commit: 1ca68ee7f828bc3cc82de48928eb9a95b2638e00
Author: jianhaizhang <jzhan067@ucr.edu>
Date: 2020-11-25 20:22:32 -0800
Commit message:
Break long text in help files to avoid overflowing.
Package: spatialHeatmap
Commit: cf064f616574c7f2c775d05a027982d0bfe70a9a
Author: jianhaizhang <jzhan067@ucr.edu>
Date: 2020-11-25 19:57:46 -0800
Commit message:
Commit: cf064f616574c7f2c775d05a027982d0bfe70a9a
Author: jianhaizhang <jzhan067@ucr.edu>
Date: 2020-11-25 19:57:46 -0800
Commit message:
Use new naming scheme for aSVG files:_[view]_shm.svg. </pre> </div> Package: BUSpaRse
Commit: a05bf453eaaa4598b6667d4433d96680d89582fd
Author: Lambda Moses <dlu2@caltech.edu>
Date: 2020-11-25 19:51:56 -0800
Commit message:
useMart deals with Ensembl archives differently from useEnsemblPackage: BUSpaRse
Commit: e699478bebdc47512745c097b4ea3c5f7fcaabfe
Author: Lambda Moses <dlu2@caltech.edu>
Date: 2020-11-25 19:23:52 -0800
Commit message:
In Bioconductor devel, biomaRt::useEnsembl no longer works with ensemblgenomes.org. So I switched to useMart.Package: scClassify
Commit: 059a3b7421b899ed6747115102b3b718781413b6
Author: yingxinlin <yingxinlindsay@gmail.com>
Date: 2020-11-25 19:26:12 +1100
Commit message:
fix predict_scClassifyPackage: scClassify
Commit: bb0aa39897c9ae2fc237eeed65b17e8bf8f049fc
Author: YingxinLin <yingxinlindsay@gmail.com>
Date: 2020-11-25 19:17:07 +1100
Commit message:
Merge remote-tracking branch 'upstream/master'Package: scClassify
Commit: 751a14e81e40be3b668f7fcd2ca4c25dec1d4c58
Author: yingxinlin <yingxinlindsay@gmail.com>
Date: 2020-09-30 20:04:06 +1000
Commit message:
fix feature selectionPackage: scClassify
Commit: f46ef43c4c86572b1573f9b1147e12a03c2d4ab2
Author: yingxinlin <yingxinlindsay@gmail.com>
Date: 2020-04-22 22:55:42 +1000
Commit message:
edit travisPackage: easyRNASeq
Commit: 22c6ff4e318e43ec66d3318652609bdfbad0e7c8
Author: nicolasDelhomme <nicolas.delhomme@slu.se>
Date: 2020-11-25 23:49:06 +0100
Commit message:
Removed DESeq as a dependency Removed defunct functions Additional warning about RPKM usagePackage: regutools
Commit: 5330c34d08d1c6d2b3259429cdff9ca67f48fac3
Author: Leonardo Collado Torres <lcolladotor@gmail.com>
Date: 2020-11-25 15:12:53 -0500
Commit message:
v1.3.1 -- merge with Bioc's git. b36cba5 should have been v1.3.1.Package: regutools
Commit: b36cba52f8c7bf412b60a003e4b8038b6aad610e
Author: Leonardo Collado Torres <lcolladotor@gmail.com>
Date: 2020-11-25 15:08:23 -0500
Commit message:
v1.1.4 -- switch to the latest biocthis GHA workflow. Update URL to resolve https://github.com/ComunidadBioInfo/regutools/issues/33Package: microbiome
Commit: d2ecbeb0218bb98d6e27d7d763239f8e0d702d71
Author: Leo <leo.lahti@iki.fi>
Date: 2020-11-25 22:05:42 +0200
Commit message:
vignette fixedPackage: microbiome
Commit: 359eacebd6aa9a9275ad6f3a1031e847bc1b2b2b
Author: Leo <leo.lahti@iki.fi>
Date: 2020-11-25 21:49:52 +0200
Commit message:
Merge remote-tracking branch 'upstream/master'Package: microbiome
Commit: 146eafc63a9885f8c6add489dcff4c1639f9a308
Author: Leo <leo.lahti@iki.fi>
Date: 2020-11-25 21:49:39 +0200
Commit message:
syncPackage: mtbls2
Commit: 967fb7f024e733021f3fce7ec325115370b55965
Author: Steffen Neumann <sneumann@ipb-halle.de>
Date: 2020-11-25 20:40:58 +0100
Commit message:
disable parallel processing (again).Package: preciseTADhub
Commit: ab31195d9a2a53278a134bb4b0529041af7055c3
Author: stilianoudakis <stilianoudasc@mymail.vcu.edu>
Date: 2020-11-25 14:40:40 -0500
Commit message:
version bumpPackage: preciseTADhub
Commit: 66ce837c53402b73f93cbc207149658f70509478
Author: stilianoudakis <stilianoudasc@mymail.vcu.edu>
Date: 2020-11-25 14:23:29 -0500
Commit message:
removed \dontrunPackage: DelayedArray
Commit: c94885374489d8386bb01e2659b981477b556a0b
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2020-11-25 11:13:21 -0800
Commit message:
Fix small issue in dim() setterPackage: TFutils
Commit: efcc8a604328c0f18f52b4e3313a2da6d4be0103
Author: Vince Carey <stvjc@channing.harvard.edu>
Date: 2020-11-25 13:53:40 -0500
Commit message:
change cre setting so vjc is maintainerPackage: TFutils
Commit: 33b71d64444abd671f75f44548d1a2ba24080b92
Author: Vince Carey <stvjc@channing.harvard.edu>
Date: 2020-11-25 13:52:46 -0500
Commit message:
fix problem with importing factor from basePackage: scAlign
Commit: 3f7b57a01d921339dc4033e7a65bf97df2574623
Author: UCDNJJ <njjohansen@ucdavis.edu>
Date: 2020-11-25 10:46:55 -0800
Commit message:
tf2_3Package: scAlign
Commit: a41d126e1e0b6ac2c08630f0f0caf7e4289bfa44
Author: UCDNJJ <njjohansen@ucdavis.edu>
Date: 2020-11-25 10:21:23 -0800
Commit message:
tf2_2Package: GEOfastq
Commit: 4dba465a62987fe41da38ab102225514fcb9c4df
Author: Alex Pickering <alexvpickering@gmail.com>
Date: 2020-11-25 10:30:22 -0800
Commit message:
address review commentsPackage: casper
Commit: 5100b5b43010f16f0f78065194d8e9eeae874626
Author: davidrusi <rosselldavid@gmail.com>
Date: 2020-11-25 18:26:29 +0100
Commit message:
Fixed version number and datePackage: PROPER
Commit: 8e84ead795ce189cf70903f94694e64a98d2fcbe
Author: hwu30 <hwu30@Haos-MacBook-Pro-16.local>
Date: 2020-11-25 12:19:01 -0500
Commit message:
Remove DESeq from DE methodPackage: scDblFinder
Commit: 27c799f91f58c42e194f7ec73f610cde8da4a18b
Author: plger <pl.germain@gmail.com>
Date: 2020-11-19 13:11:05 +0100
Commit message:
Merge branch 'master' of github.com:plger/scDblFinderPackage: scDblFinder
Commit: ed19e1f6c5ac85eecbdae4e06bf84c283a828eab
Author: plger <pl.germain@gmail.com>
Date: 2020-11-19 13:10:54 +0100
Commit message:
version bumpPackage: scDblFinder
Commit: 3c0f9a4bb4f69dbc1a9af089282cccd825c406c6
Author: Pierre-Luc <pl.germain@gmail.com>
Date: 2020-11-19 13:10:37 +0100
Commit message:
added temp extra installPackage: scDblFinder
Commit: 9f8f08f64eeecfea6e4741a63cc3da83e0d59b9f
Author: plger <pl.germain@gmail.com>
Date: 2020-11-19 09:53:48 +0100
Commit message:
added :: dependencies to suggestPackage: scDblFinder
Commit: 9ff13f7210d078870fb2e38883cb1a072771cab1
Author: plger <pl.germain@gmail.com>
Date: 2020-11-19 09:17:35 +0100
Commit message:
Merge branch 'master' of github.com:plger/scDblFinderPackage: scDblFinder
Commit: f71970bc009367b94bdd9dcd06228bf268a29570
Author: plger <pl.germain@gmail.com>
Date: 2020-11-19 09:17:22 +0100
Commit message:
fixed wrong containerPackage: scDblFinder
Commit: 92f589cf1b7bc09e9978e8776531fb1ae4f6892b
Author: Pierre-Luc <pl.germain@gmail.com>
Date: 2020-11-19 09:08:07 +0100
Commit message:
Merge pull request #29 from LTLA/master Refer to the right internal function in tests.Package: scDblFinder
Commit: 5ef6ddd189fed2f50f2647996fb308e1b137b9ee
Author: plger <pl.germain@gmail.com>
Date: 2020-11-19 09:06:43 +0100
Commit message:
updated the workflow to use image with dependenciesPackage: scDblFinder
Commit: d48e431d80f65bc557bd3452e5b31288051c7932
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-18 20:52:36 -0800
Commit message:
Removed unnecessary argument from docs.Package: scDblFinder
Commit: 792a521346dd227c8a170ea3be48dc3862fd1eaa
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-18 20:34:33 -0800
Commit message:
Refer to the right internal function in tests.Package: scDblFinder
Commit: 4d835404749dc4329c1e78c88473210d9a3e1e71
Author: Pierre-Luc Germain <pl.germain@gmail.com>
Date: 2020-10-29 12:08:22 +0100
Commit message:
Merge remote-tracking branch 'upstream/master'Package: scDblFinder
Commit: 16d9952965c88a16083edc0610279b77e6f3dddd
Author: Pierre-Luc Germain <pl.germain@gmail.com>
Date: 2020-10-29 12:07:22 +0100
Commit message:
version bumpPackage: scDblFinder
Commit: 41d747da7cda98802d6813143c2dec6a279c8990
Author: Pierre-Luc Germain <pl.germain@gmail.com>
Date: 2020-10-29 11:54:59 +0100
Commit message:
Merge branch 'master' of github.com:plger/scDblFinderPackage: scDblFinder
Commit: 27294cc4fde28d1ee4c809b1fbc9daade7e5e3b5
Author: Pierre-Luc Germain <pl.germain@gmail.com>
Date: 2020-10-29 11:54:45 +0100
Commit message:
Merge branch 'RELEASE_3_12'Package: scDblFinder
Commit: d710d5b7ed89e874253071b17da0e1c0f7d130d1
Author: Pierre-Luc <pl.germain@gmail.com>
Date: 2020-10-28 10:54:40 +0100
Commit message:
Update README.mdPackage: scDblFinder
Commit: 98a344193971acc4af7e709a8f2d09648e38a134
Author: Pierre-Luc Germain <pl.germain@gmail.com>
Date: 2020-10-27 16:54:03 +0100
Commit message:
version bumpPackage: scDblFinder
Commit: 59152d8cdc5efca400a05756fa8eb87b4fafcc0e
Author: Pierre-Luc Germain <pl.germain@gmail.com>
Date: 2020-10-27 16:53:46 +0100
Commit message:
updated documentationPackage: scDblFinder
Commit: c3f5c0244e7e7876ce8e0dbed810a781b082ad65
Author: Pierre-Luc Germain <pl.germain@gmail.com>
Date: 2020-10-27 16:53:34 +0100
Commit message:
changed clustering to pass BNPARAM and BPPARAMPackage: scDblFinder
Commit: 469ed74e05eddf6421929a4aeab2e1c5d901e819
Author: Pierre-Luc Germain <pl.germain@gmail.com>
Date: 2020-10-27 16:53:01 +0100
Commit message:
changed clustering to pass BNPARAM and BPPARAMPackage: vulcan
Commit: 671bcde1083a01087494d94f63d70ed7abeb0acc
Author: Federico Manuel Giorgi <federico.giorgi@unibo.it>
Date: 2020-11-25 18:17:35 +0100
Commit message:
Updated to DESeq2Package: vulcan
Commit: 26c71c124a7ce6bb47bb539cf14624114bb4141a
Author: Federico Manuel Giorgi <federico.giorgi@unibo.it>
Date: 2020-11-25 18:16:23 +0100
Commit message:
Updated to DESeq2Package: vulcan
Commit: 712b4ffa75d54fd7a26d7bd3d92ac80199b022e8
Author: Federico Manuel Giorgi <federico.giorgi@unibo.it>
Date: 2020-11-25 17:43:21 +0100
Commit message:
Updated to DESeq2Package: PROPER
Commit: 8803260229687571568174a884ba1f2d0dcb914f
Author: hwu30 <hwu30@Haos-MacBook-Pro-16.local>
Date: 2020-11-25 12:10:15 -0500
Commit message:
Remove DESeq from DE methodPackage: PROPER
Commit: 7f0ef08c8e6762294c1eb079b8da6bf53bba4998
Author: hwu30 <hwu30@Haos-MacBook-Pro-16.local>
Date: 2020-11-25 12:09:36 -0500
Commit message:
Merge branch 'master' of git.bioconductor.org:packages/PROPERPackage: PROPER
Commit: d5124bc6c72b3f330875cdfd26158087cffacbd7
Author: hwu30 <hwu30@Haos-MacBook-Pro-16.local>
Date: 2020-11-25 12:09:12 -0500
Commit message:
Remove DESeq from DE methodPackage: DEsubs
Commit: 8bff392a2f0bb21e7f9f73f4915aaa901eff6d89
Author: Panos Balomenos <balomenos@upatras.gr>
Date: 2020-11-25 18:59:35 +0200
Commit message:
Removed support for DESeqPackage: yaqcaffy
Commit: aba97fddaa46e24eb4c5d64157eeb15b01e59ea7
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2020-11-25 17:52:11 +0100
Commit message:
udpate maintainer emailPackage: PhyloProfile
Commit: 53e58de7037e212f16c6aaa42582ed6d06a8980f
Author: trvinh <trvinh@gmail.com>
Date: 2020-11-25 17:12:39 +0100
Commit message:
Plot background for NA orthologsPackage: tRanslatome
Commit: 4ee27ef14687fe3fc95a891b60f3bd4dc790d28a
Author: erik.dassi@gmail.com <erikdassi@users.noreply.github.com>
Date: 2020-11-25 16:50:17 +0100
Commit message:
change to DESeq2Package: tRanslatome
Commit: e820b69c29b0a6ce33accc90684ec83222525a65
Author: erik.dassi@gmail.com <erikdassi@users.noreply.github.com>
Date: 2020-11-25 16:48:58 +0100
Commit message:
change to DESeq2Package: Spectra
Commit: d4927cc63467280596d5c8f3f70ca3aa888689c7
Author: Johannes Rainer <5506112+jorainer@users.noreply.github.com>
Date: 2020-11-25 15:58:02 +0100
Commit message:
Merge pull request #166 from rformassspectrometry/jomain Add support for arbitrary parameters in filterIntensity (issue #164)Package: Spectra
Commit: 616d6fd9052055becf92ab23fcf2b577ada62864
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-25 15:26:05 +0100
Commit message:
ci: fix tar callPackage: Spectra
Commit: 7e6037eb9dc020a80fe580d49979f50a68455942
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-25 15:21:14 +0100
Commit message:
tests: remove obsolete linesPackage: Spectra
Commit: 5c24ec7fe2d9950d1712660e3e2a41d1c00d906c
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-25 15:18:49 +0100
Commit message:
ci: fix netcdf archive extractionPackage: Spectra
Commit: 55556b79860fecc9f1f8adf3bf53f46f32ebf8e2
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-25 14:56:20 +0100
Commit message:
ci: fix download and install of netcdf on macosPackage: Spectra
Commit: 29f084be4e0d1f23ac026943ab69270b5282fe8f
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-25 14:42:22 +0100
Commit message:
ci: install pre-build netcdf from mac.r-project.orgPackage: Spectra
Commit: 2233ffd0a518ba073365b6dac8fb09b2ead2c1b4
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-25 13:18:07 +0100
Commit message:
refactor: support passing arguments in filterIntensity - Support passing of parameters to filter function in `filterIntensity` (issue #164).Package: Spectra
Commit: c19d0527ea0317526a0d3d4592a8b8b1bd1f8786
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-24 20:03:59 +0100
Commit message:
ci: disable installation of netcdf on macOSPackage: Spectra
Commit: c7c2f7f4e825324b9347878031cb7d7ccc9ac77b
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-24 19:13:29 +0100
Commit message:
ci: add installation of netcdf on macOSPackage: Spectra
Commit: 24f14975ee74e19edfb9d482b8f88da15c111721
Author: Johannes Rainer <5506112+jorainer@users.noreply.github.com>
Date: 2020-11-24 18:46:12 +0100
Commit message:
Merge pull request #165 from rformassspectrometry/jomain Merge directly as this affects only CIPackage: Spectra
Commit: 6494abacdd8c8e1ab3bcb9a25835c669b0cab4bf
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-24 17:47:03 +0100
Commit message:
ci: force manual install of some packagesPackage: Spectra
Commit: 5c9fa820bec583de87825ae9c02be87098e1c8fa
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-24 16:34:53 +0100
Commit message:
fix: fix error messagePackage: Spectra
Commit: cdc165af0fe293218837d89caae867d34e717065
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-24 16:34:10 +0100
Commit message:
ci: force manual install of packagesPackage: Spectra
Commit: ddc962a74e0fb5cb9decf3e093eced460fa6899d
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-24 16:02:52 +0100
Commit message:
ci: disable vdiffr testsPackage: Spectra
Commit: 937c474267e84fae12cd526c95094a74cbaf37db
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-24 15:38:03 +0100
Commit message:
ci: update/replace GH with recent biocthisPackage: Spectra
Commit: e9125e9bfd2e8002e34fa02c840985f23a3b29e5
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-20 08:48:23 +0100
Commit message:
ci: set environment variable CI=truePackage: Spectra
Commit: f4786d07a712becfb7a9af5989196c188d9efa2a
Author: jorainer <johannes.rainer@gmail.com>
Date: 2020-11-20 08:10:24 +0100
Commit message:
bump versionPackage: TrajectoryGeometry
Commit: 706ea7c4ac1e56fd2096989a355c68de42c0489a
Author: AnnaLaddach <annaladdach@gmail.com>
Date: 2020-11-25 14:56:58 +0000
Commit message:
traj2Data documentedPackage: cmapR
Commit: e7d1faeddae406da6295fbbe2c21cbbf10678845
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-11-25 09:09:45 -0500
Commit message:
resolving merge conflictsPackage: cmapR
Commit: 700e9419a313179ab50fcb6ad34b7c1ce12d487d
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-11-25 08:43:40 -0500
Commit message:
Merge branch 'master' of https://github.com/cmap/cmapRPackage: cmapR
Commit: de3fdba439a30d13873ffac8359d3eea76ee2acc
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-11-24 17:56:41 -0500
Commit message:
updating datePackage: cmapR
Commit: 379f2483f962c56fc9e17231d4ab3029ee699fe5
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-11-24 10:25:20 -0500
Commit message:
Merge pull request #61 from nuno-agostinho/patch-1 Fix tutorial's installation instructionsPackage: cmapR
Commit: 3192d341da9e6fce5237cb40056e42c6780b39f7
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-11-24 10:25:08 -0500
Commit message:
Merge branch 'master' into patch-1Package: cmapR
Commit: 82aa4c861228b06ba0c66b8006768558d94997a5
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-11-23 11:58:22 -0500
Commit message:
removing dependency on prada and replacing with flowCorePackage: cmapR
Commit: 68bf698869d9dcda9d772399cf5ac87e773f1890
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-11-23 11:52:27 -0500
Commit message:
Update tutorial.RmdPackage: cmapR
Commit: 5a724269adb8d19ffc8842d27cfb07d08200ee1b
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-11-23 11:52:22 -0500
Commit message:
updating docsPackage: cmapR
Commit: bf8607969725fe66f5b34df8c4f5296c28268017
Author: Nuno Agostinho <nunodanielagostinho@gmail.com>
Date: 2020-08-14 01:15:05 +0100
Commit message:
Fix tutorial's installation instructionsPackage: cmapR
Commit: b804d22b701021487591f810045869b98477e089
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-07-08 14:13:11 -0400
Commit message:
Delete cmapR_tutorial.ipynb superseded by vignettePackage: cmapR
Commit: 44b25832fb2558a511959952e46d9ba8394add3b
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-05-08 10:29:06 -0400
Commit message:
Update README.md update after acceptance into BioconductorPackage: cmapR
Commit: 93714b7f11ca4adbfb98554084d4c2951ef284a7
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-04-22 09:25:43 -0400
Commit message:
fixing bug in writing GCT version 1.2 closes issue #55Package: cmapR
Commit: d9671a44189dd1756f97b97fa1b9b50696eab94c
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-04-01 13:44:44 -0400
Commit message:
Update DESCRIPTIONPackage: cmapR
Commit: 28cc36b4aa7c811277fecec97fc81773ba3b4e30
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-04-01 12:57:54 -0400
Commit message:
Merge pull request #54 from cmap/bioc Update utils.RPackage: cmapR
Commit: 19025916962dbea019480240bd0c87d7825dd706
Author: Ted Natoli <ted.e.natoli@gmail.com>
Date: 2020-03-26 15:07:53 -0400
Commit message:
Update utils.RPackage: metaseqR2
Commit: aad1316f438572c1ba91826a0733fbddd88d3008
Author: Panagiotis Moulos <moulos@fleming.gr>
Date: 2020-11-25 16:10:07 +0200
Commit message:
Removed DESeq namespace from scvBiasCorrectionFits.rdaPackage: glmGamPoi
Commit: 89aac9d45befbacbd9f97225277e634ba3c5bd22
Author: const-ae <artjom31415@googlemail.com>
Date: 2020-11-25 14:52:03 +0100
Commit message:
Bump version and update NEWSPackage: glmGamPoi
Commit: d6aeb2753cd5155fc6967b2abe4e046262a6bc0d
Author: const-ae <artjom31415@googlemail.com>
Date: 2020-11-25 14:50:35 +0100
Commit message:
Update man page for loc_median_fitPackage: glmGamPoi
Commit: 0deacb3e00310c3956780264d33b0dbf8e2084b2
Author: const-ae <artjom31415@googlemail.com>
Date: 2020-11-25 14:50:21 +0100
Commit message:
Return offset_matrix from glm_gpPackage: glmGamPoi
Commit: 14c7c450d52be25da877d34284a70ed2f71ed1b5
Author: const-ae <artjom31415@googlemail.com>
Date: 2020-11-25 14:44:22 +0100
Commit message:
Handle HDF5Matrix offsetPackage: ceRNAnetsim
Commit: 8f35b59d784b862896b322e19311f5c793d6e9dd
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-25 14:45:54 +0300
Commit message:
solving conflict Merge remote-tracking branch 'upstream/RELEASE_3_12' # Conflicts: # R/vis_graph.RPackage: ceRNAnetsim
Commit: 9a345a814367a0a6e30dc3bf11a71a89014cfe60
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-25 14:25:09 +0300
Commit message:
Update version bumpPackage: ceRNAnetsim
Commit: a067406550917891925d9b70a26cfc0216e7e7bf
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-25 14:21:30 +0300
Commit message:
fixed bugPackage: scAlign
Commit: ab840d5c6ad83d32c0794522f6ec283344385299
Author: UCDNJJ <njjohansen@ucdavis.edu>
Date: 2020-11-25 03:11:08 -0800
Commit message:
tf2Package: ceRNAnetsim
Commit: 5678cd8ca3e9323a9f0354aa72d8d91cdecb7efe
Author: selcenari <selcenarii@gmail.com>
Date: 2020-11-25 12:47:54 +0300
Commit message:
merging bioconductor upstreamPackage: ceRNAnetsim
Commit: 03c1def76ac6eed76992c78ffde5c47b8efd130f
Author: selcenari <32389240+selcenari@users.noreply.github.com>
Date: 2020-11-24 18:40:21 +0300
Commit message:
solved typing problemsPackage: ceRNAnetsim
Commit: 3a4f8d15cf9b9c6d0649e15ddf8fcb8061b9555c
Author: selcenari <32389240+selcenari@users.noreply.github.com>
Date: 2020-11-24 18:39:46 +0300
Commit message:
typing fixedPackage: ceRNAnetsim
Commit: ea89928a4ad047082b3270ab6b578af8f9b41245
Author: selcenari <32389240+selcenari@users.noreply.github.com>
Date: 2020-11-24 18:38:30 +0300
Commit message:
bioconductor version updatePackage: ceRNAnetsim
Commit: 1a152c83f387292e44a4feb11b5fb3f6f186a7e4
Author: selcenari <32389240+selcenari@users.noreply.github.com>
Date: 2020-11-23 21:42:50 +0300
Commit message:
layout problem solvingPackage: ceRNAnetsim
Commit: a84fa67cb0407c09666da1780fa082e6a8358c5f
Author: selcenari <32389240+selcenari@users.noreply.github.com>
Date: 2020-11-23 12:19:20 +0300
Commit message:
Update .travis.ymlPackage: ceRNAnetsim
Commit: aec1a9937803fa1d73bdf2f00cb4610b836635da
Author: selcenari <32389240+selcenari@users.noreply.github.com>
Date: 2020-11-23 11:50:26 +0300
Commit message:
Update .travis.ymlPackage: ceRNAnetsim
Commit: 9b7dbb33dc561420112ed1d36d6c7a7b33ad0dac
Author: selcenari <32389240+selcenari@users.noreply.github.com>
Date: 2020-11-22 21:11:30 +0300
Commit message:
test for solving ggraph errorPackage: ceRNAnetsim
Commit: 03831705ab3ceb0a7677f9cf36b6328935a1b52a
Author: selcenari <32389240+selcenari@users.noreply.github.com>
Date: 2020-11-19 14:58:01 +0300
Commit message:
solved wrong typingPackage: ceRNAnetsim
Commit: fe8237b9946613493a831e86b1862fb65dffdd26
Author: selcenari <32389240+selcenari@users.noreply.github.com>
Date: 2020-11-19 14:03:39 +0300
Commit message:
graph is layout now!!?? thomasp85/ggraph#208Package: ceRNAnetsim
Commit: 7f7b39f5eda115a16d601375f34ed2eb50a74357
Author: selcenari <32389240+selcenari@users.noreply.github.com>
Date: 2019-11-28 22:35:55 +0300
Commit message:
solution forgetten pipePackage: ceRNAnetsim
Commit: 1c4bfa8db5e71ae957c4a0ed610f94be1377f36f
Author: selcenari <32389240+selcenari@users.noreply.github.com>
Date: 2019-11-28 22:28:20 +0300
Commit message:
fixed bug because of removing all nodesPackage: EnMCB
Commit: 6433a883fc8d7a52c16991d7560027b23c735db3
Author: 于昕 MacBook pro <yuxin@yuxindeMacBook-Pro.local>
Date: 2020-11-25 16:43:00 +0800
Commit message:
ensemble bug fixPackage: MOFA2
Commit: baef973a129f9ad59a43250bb0c73eeb5413062c
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-25 08:35:06 +0100
Commit message:
updated NEWSPackage: MOFA2
Commit: 8e08ee51bd926afc283e41a283ef396852a3cf30
Author: Ricard Argelaguet <ricard.argelaguet@gmail.com>
Date: 2020-11-24 17:59:39 +0100
Commit message:
Merge pull request #58 from bioFAM/main-dev Bring the latest fixes to the base branchPackage: MOFA2
Commit: 22b839510f335db91e00de07d5eab1762314855b
Author: Ricard Argelaguet <ricard.argelaguet@gmail.com>
Date: 2020-11-24 17:59:24 +0100
Commit message:
Merge pull request #55 from bioFAM/mefisto MefistoPackage: MOFA2
Commit: 998b497c7ea782208317be200dbca0ec29debbdf
Author: Danila Bredikhin <danila.bredikhin@embl.de>
Date: 2020-11-24 16:54:38 +0100
Commit message:
Merge branch 'master' into main-devPackage: MOFA2
Commit: 49abe6ee6f4e971678d24fd9d3982d266e5b51df
Author: Danila Bredikhin <danila.bredikhin@embl.de>
Date: 2020-11-24 13:53:14 +0100
Commit message:
Add basilisk dependency to the DockerfilePackage: MOFA2
Commit: 946836f15fac9c2da44545e1bb5e24fcf26bcbc2
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-24 10:17:20 +0100
Commit message:
Merge branch 'master' into mefistoPackage: MOFA2
Commit: fd5895cd5b6e78a2156cf81d06e5a40fbec1eef4
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-16 13:32:27 +0100
Commit message:
updated doc to clarify MEFISTO usagePackage: MOFA2
Commit: 1aeebfc0bc7adecfbc380f9bc8e3997d402a491d
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-16 09:55:12 +0100
Commit message:
added dtw dependency for basiliskPackage: MOFA2
Commit: a1bb4d7f6c0e26f8ab883b961f9df3a48b180600
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-11-16 09:53:11 +0100
Commit message:
minor update in plot_factorsPackage: MOFA2
Commit: 3d191a10a244934cf69c521f56472fd06d1f9348
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-16 09:50:15 +0100
Commit message:
added missing requirments for mefistoPackage: MOFA2
Commit: 797e7bccb2ffc0de7554df9c3735a70633c003b6
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-13 11:41:29 +0100
Commit message:
minor change for spatial factor plotPackage: MOFA2
Commit: 246ff8823b1eacf2ae469af56f3281a8a6abb1f0
Author: Danila Bredikhin <danila.bredikhin@embl.de>
Date: 2020-11-11 20:18:05 +0100
Commit message:
Add some basic tests for the Python interfacePackage: MOFA2
Commit: 0e7608c26130ad6dea1b38597dc9549e9624fac0
Author: Danila Bredikhin <danila.bredikhin@embl.de>
Date: 2020-11-11 20:14:52 +0100
Commit message:
Fix AnnData interface for multi-group MOFAPackage: MOFA2
Commit: e65202daaf13b1615eb78f0e209683bb21024581
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-11 09:26:08 +0100
Commit message:
minor changePackage: MOFA2
Commit: 17bac9767f8729840d9d9939d6614940d83c5918
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-11 08:13:04 +0100
Commit message:
moved dtw import to respective functionPackage: MOFA2
Commit: f84fb5d236ca054459e68276a019f858a0dc971b
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-10 16:53:04 +0100
Commit message:
disabled warning on N per group for MEFISTOPackage: MOFA2
Commit: 4cebc602a320f8db12148d6badbb2298eeb6502b
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-10 13:51:01 +0100
Commit message:
enable passing covariates as stringPackage: MOFA2
Commit: c62766f5768bc22607bc49580b2d26eacad99cf7
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-09 13:57:23 +0100
Commit message:
minor fix in interpolation and added more examplesPackage: MOFA2
Commit: fc62a9f3964b2e5d6541f7aabff4dcf17c834aa6
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-09 13:57:02 +0100
Commit message:
merged master into mefistoPackage: MOFA2
Commit: a69ce3b246abec669c3eec2cecac96346e818ac8
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-09 12:32:59 +0100
Commit message:
changed n_inducing option to frac_inducingPackage: MOFA2
Commit: 9ebddf372d561d5c79e1ac6f29d06e27c88e7786
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-09 10:28:21 +0100
Commit message:
added warning on sparseGPPackage: MOFA2
Commit: 106764c68ad461d6d555f871979236df07153da1
Author: bv2 <britta.velten@gmail.com>
Date: 2020-11-09 10:24:11 +0100
Commit message:
disabled warning of N per group for MEFISTO and minor changesPackage: MOFA2
Commit: e7dbacfe5269135b4d7ad35b5dcda139e9ad6af6
Author: Danila Bredikhin <danila.bredikhin@embl.de>
Date: 2020-11-04 03:20:49 +0100
Commit message:
Fix Saving metadata with Unicode charactersPackage: MOFA2
Commit: 87c882218d195a142f5caa1012ddc2dcf57f8266
Author: Danila Bredikhin <danila.bredikhin@embl.de>
Date: 2020-11-04 03:20:21 +0100
Commit message:
Merge branch 'master' into main-devPackage: MOFA2
Commit: 2583551e49aa8aca559152ff74202640533b6fdf
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-11-03 12:01:22 +0100
Commit message:
fix order of groups in plot_data_overviewPackage: MOFA2
Commit: 9ee70e08d4258c6c0280a61e6db16b52a9a48212
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-29 13:43:38 +0100
Commit message:
minor changesPackage: MOFA2
Commit: 2a75af8da2887c2574b482e94910e9e4e9a194b9
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-28 16:56:13 +0100
Commit message:
minor changesPackage: MOFA2
Commit: 919ed739f30d48a7170024ff6392d5ee4e6b674f
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-28 11:31:54 +0100
Commit message:
minor fixPackage: MOFA2
Commit: e5a19168e8df3c72afea471d72c949764369e9d0
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-23 13:35:15 +0200
Commit message:
disable model_groups for G=1Package: MOFA2
Commit: 6b643219fd2d7ecf0f896cadd268bd96fe5c2235
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-23 13:34:33 +0200
Commit message:
minor changesPackage: MOFA2
Commit: 176e791f4ec8c82dece20fd91b6675fbf3ec5ab0
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-23 11:07:14 +0200
Commit message:
added interpolation option to smooth_optsPackage: MOFA2
Commit: fa9ff38b2bf03a305e177a8f1be052fa4653d733
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-22 17:51:44 +0200
Commit message:
nicer plots and better documentationPackage: MOFA2
Commit: 2f7f774ed9ba07d7bf561088525f77921bdc1945
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-22 17:44:40 +0200
Commit message:
nicer plots and better documentationPackage: MOFA2
Commit: d2184dd383514e197c735953f5af99493d4e0b80
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-21 16:12:38 +0200
Commit message:
added interpolation to vignettePackage: MOFA2
Commit: a6ed7a1c871a773532e22905b08823afe22e79b5
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-21 15:59:14 +0200
Commit message:
fixed minor bugPackage: MOFA2
Commit: f8c70a87965fff9a8ee3003a6b7f245857a65fba
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-21 15:45:44 +0200
Commit message:
implemented interpolation in RPackage: MOFA2
Commit: 542936a9777a2181d47eec7bba6880e8813cf2ca
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-21 07:55:04 +0200
Commit message:
added test modelPackage: MOFA2
Commit: 665d126862a7c3118cba4a58fff469119421abd3
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 17:18:47 +0200
Commit message:
updated documentationPackage: MOFA2
Commit: 9f91229d1c380a29911c44234c74af73b1be934e
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 17:13:08 +0200
Commit message:
drafted experimental interpolation functions in RPackage: MOFA2
Commit: 8fe4d75621ccf5c86f234e1f0c323a927cc71506
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 15:57:06 +0200
Commit message:
added some more documentation and examples to mefisto partsPackage: MOFA2
Commit: 3e2515f7dba02a08b44eb07bae95b169a3284bcc
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 15:23:19 +0200
Commit message:
minor changesPackage: MOFA2
Commit: 0ed4b89c5bb11d223584459abc30ce6ec91caafd
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 14:29:51 +0200
Commit message:
minor changesPackage: MOFA2
Commit: edaea1ed46c038690b9f7cce6189fd6f31f2b8be
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 13:09:17 +0200
Commit message:
fixed minor bugPackage: MOFA2
Commit: b2ef021f2d0d6f2404643753c2cb7e2d9b4b3576
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 11:52:05 +0200
Commit message:
less stringent warningsPackage: MOFA2
Commit: f2e6c79c0145028f39b5a72a2357fae1988bffe9
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 11:51:33 +0200
Commit message:
added warping option to plot_factors_vs_covPackage: MOFA2
Commit: 5bc843b0e1cefba16cf9203272a05fbdc8c9f48f
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 11:21:27 +0200
Commit message:
fixed minor bugPackage: MOFA2
Commit: ca772093f9136ce4a589790ddaa1deaa8fd29a1b
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 11:15:56 +0200
Commit message:
enable covariate passing as dataframe in create_mofa, debugged set_covariatesPackage: MOFA2
Commit: 8b72d5b2b54c1ae79fe92a4cceac811d81d2c9b5
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 10:25:54 +0200
Commit message:
fixed plotting factors vs cov (2d) and updated simulation vignettesPackage: MOFA2
Commit: e990058c3875e00159e3ca488d2ef215d44b422b
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 09:29:12 +0200
Commit message:
fixed plot_factors_vs_covariatePackage: MOFA2
Commit: f2eb120e611097844a75fc9444411be122453fcb
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 09:10:54 +0200
Commit message:
removed imagesPackage: MOFA2
Commit: b6ce143def88c9f662dfeec5f35458b83ebbe969
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 09:04:58 +0200
Commit message:
moved vignettes and removed empty MOFA2 R folderPackage: MOFA2
Commit: 0884993c25145dd5fe6864240fdc0dd6e3a61ea6
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-20 08:48:35 +0200
Commit message:
Merge branch 'master' into mefistoPackage: MOFA2
Commit: 764c80fb6a5a3623f11e3496ef832c7ca78f7fac
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-16 11:00:17 +0200
Commit message:
fixed minor bud in set_covariatesPackage: MOFA2
Commit: 234cd69cc8a0efb3e838a5d01bcae7d6916beca7
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-16 10:16:58 +0200
Commit message:
fixed bug introduces in restructuringPackage: MOFA2
Commit: 44caac995599cd4b4b501e91d7207585026d85b8
Author: Danila Bredikhin <danila.bredikhin@embl.de>
Date: 2020-10-14 15:48:09 +0200
Commit message:
Add textshaping package dependencies to the DockerfilePackage: MOFA2
Commit: f353ab4a004a31d93b812c5db77a80ab68d1b232
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-14 14:35:45 +0200
Commit message:
enable multi-group sparse inferencePackage: MOFA2
Commit: 27d37f48366aa1fd9bafe418b707f1ac75b769f1
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-14 14:34:47 +0200
Commit message:
adapted simulation setup for sharednessPackage: MOFA2
Commit: c753b59ea2cf57d5473f32fcadbc06b7f7ef95e1
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-13 15:02:59 +0200
Commit message:
fixed bugPackage: MOFA2
Commit: 611c3422d443dc4d4da6628f1649545b947ac76b
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-13 14:14:06 +0200
Commit message:
fixed saving for normal (non-smooth) MOFA modelsPackage: MOFA2
Commit: 87a7a76eb44b31015dcfdb05b21fdd8759576d8c
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-13 11:05:20 +0200
Commit message:
added missing groups argumentPackage: MOFA2
Commit: 789400f0194e554310c6ca7fbd02d6a39ec26db3
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-13 11:03:09 +0200
Commit message:
added missing group argumentPackage: MOFA2
Commit: 9a9ffad7cde1669de555c5d3600febbdc10bd42a
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-13 10:58:07 +0200
Commit message:
mergingPackage: MOFA2
Commit: 4986794e5eead07a3b9ef2de64a22af5e0de8517
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-12 10:15:44 +0200
Commit message:
reformat plot_factor_vs_covPackage: MOFA2
Commit: 36a32594edf98642ca10980e0956dd57cce23fb8
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-11 20:53:48 +0200
Commit message:
remove lineplotPackage: MOFA2
Commit: 533a847746ad151572763803cb5fad6f4d45038c
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-11 20:41:21 +0200
Commit message:
add groups attribute to Y nodes. Also reformat groups option in init_modelPackage: MOFA2
Commit: 29d6f6bf2d5e1ada8472e9fefd62b757fe4520ac
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-11 19:06:45 +0200
Commit message:
update R packages. Move all covariates functions to mefisto.RPackage: MOFA2
Commit: fac8add57d9f41048e27cd07305b24a2afaacd69
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-09 15:47:12 +0200
Commit message:
remove covariates from create_mofaPackage: MOFA2
Commit: b026f11d9185db88469f3ca6f1fd974a1149357a
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-09 15:44:16 +0200
Commit message:
Merge branch 'code_reformat' of https://github.com/bv2/MOFA2 into code_reformatPackage: MOFA2
Commit: ecdff2e9637f2b5354a1fcedbf6baddd16737f9c
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-09 15:44:13 +0200
Commit message:
modifying entry_point.pyPackage: MOFA2
Commit: 229591d19e2f7df41592d53da62aac6264fcdacc
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-09 15:32:55 +0200
Commit message:
adapted vignettes to new covariate passingPackage: MOFA2
Commit: 027bca5260dfbb22868029d7dbd7cbc8a7c80178
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-09 15:18:56 +0200
Commit message:
added documentation to set_covariates and exportingPackage: MOFA2
Commit: 872d1d1f64ec8b3e8538ec43bffcc3f3e54a1a9a
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-09 14:35:31 +0200
Commit message:
added doc to smooth options and nicer warning for sparse + alignPackage: MOFA2
Commit: d91fe21934fdd704dac85c3be42bc0f357825270
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-09 14:00:25 +0200
Commit message:
fix errors when saving and loading the modelPackage: MOFA2
Commit: 581322bd1dd19e1b64fde0284a076237e98e5c47
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-09 12:47:53 +0200
Commit message:
Merge branch 'SMOFA' into code_reformatPackage: MOFA2
Commit: 7d4f7b1e4b71785e4c367de31247732334fdd14b
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-09 12:45:33 +0200
Commit message:
fix conflicts entry_pointPackage: MOFA2
Commit: baaf87049b7c8ca3df7bdd6af632596ffe968c69
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-09 12:43:27 +0200
Commit message:
both R and Python are now functional, berfore merging with SMOFA branchPackage: MOFA2
Commit: 6c4d99138ccd3b099f9459199119aca39da4b1f1
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-09 10:14:31 +0200
Commit message:
fixed noise level in simulationsPackage: MOFA2
Commit: 41c04296fcf0f900161dd00c84245f7a3d39e910
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-08 08:53:13 +0200
Commit message:
minor fixPackage: MOFA2
Commit: e09d9b7dfebce7c266e0f2c0b2c8668ff1f6fade
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-07 15:50:29 +0200
Commit message:
added some documentation and move inducing point selection to gp_utilsPackage: MOFA2
Commit: 9c920eb064fd68156ef2e45324fcc801ce6fe198
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-07 13:30:21 +0200
Commit message:
added plotting functions for GP hyperparameters and minor fixPackage: MOFA2
Commit: 6d43a26489d576cd9ce06cc08713b8aeb04bafd3
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-07 12:34:07 +0200
Commit message:
remove Y_ELBO_TauTrick in entry_pointPackage: MOFA2
Commit: f3137372b11d63fac2f3b2964bae14d34b66948b
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-06 14:50:57 +0200
Commit message:
removed torch dependenciesPackage: MOFA2
Commit: ea0b260262755a1e109471c0aad9d554f375ca4e
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-06 14:45:32 +0200
Commit message:
removed sigma_const option, enabled no model_groups and warping, fixed dimension of Sigma terms in sparse nodePackage: MOFA2
Commit: 14005779ca9e47a36522597a0b4a68fd41ae5c71
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-06 13:32:19 +0200
Commit message:
modularise Sigma codePackage: MOFA2
Commit: f40acc690a40fbb5a866c3baa0914292c95dba7f
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-05 18:26:47 +0200
Commit message:
fixed minor bugsPackage: MOFA2
Commit: 226984309ddcfdddb271cd08b7cd86dfe384f4d7
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-05 18:19:57 +0200
Commit message:
introduce bas class for Sigma to avoid reinits of KcPackage: MOFA2
Commit: f450e8c7d2e63e03393661e941e8131f3a75a296
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-05 18:15:21 +0200
Commit message:
modularized Sigma nodePackage: MOFA2
Commit: d83a469caf46fa8bf54a0b40313386034c5f6a75
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-05 16:38:00 +0200
Commit message:
Merge branch 'SMOFA' into code_reformatPackage: MOFA2
Commit: c707e4a48edb7d00318d76150d6691310f288d25
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-05 16:15:22 +0200
Commit message:
refactored gradient calcPackage: MOFA2
Commit: 9a0ae07276dd4755b14739f4ab1bfe4de57ff150
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-05 15:53:52 +0200
Commit message:
remove univariate smooth factor optionsPackage: MOFA2
Commit: 56159e5c95c71ed4ce952fcd20ae9257c38d82d1
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-05 15:37:32 +0200
Commit message:
merge with master, R codePackage: MOFA2
Commit: d6e2f38897b9dc0d568095fb1cf3671e9bdbab79
Author: rargelaguet <ricard.argelaguet@gmail.com>
Date: 2020-10-05 15:35:23 +0200
Commit message:
merge with master and reformat python codePackage: MOFA2
Commit: 4740d8ae792d151cf7e6f05678c7f632760f07ed
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-02 17:12:10 +0200
Commit message:
fixed bug in gradient calc with kroneckerPackage: MOFA2
Commit: 610e478119faffd84321205626b1d36165c69c4c
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-02 15:51:10 +0200
Commit message:
Merge branch 'SMOFA' into dev_speedupsPackage: MOFA2
Commit: 6df7f90f8f3da5e192112befeecbe60122ca6753
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-02 15:51:05 +0200
Commit message:
minor change in checksPackage: MOFA2
Commit: 12592661d3e42dfcbacb1de2cc521132e9eb5420
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-02 11:57:18 +0200
Commit message:
added html vignettes for temp. and spatial dataPackage: MOFA2
Commit: 1178d75280a2d256fcfa13199a5b6eb856450e24
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-02 11:56:55 +0200
Commit message:
cleaned SMOFA stuff and updated vignettes for temp. and spatial dataPackage: MOFA2
Commit: 6df11baa2619114cf2eb50a7eb2bf70a0489352b
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-02 11:27:17 +0200
Commit message:
removed unused training option and nodesPackage: MOFA2
Commit: a31a8037b017ca47cb2bc4d70a942070f53db086
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-02 11:22:56 +0200
Commit message:
removed unused training optionPackage: MOFA2
Commit: e5291eaa72d5a22bc1bd51c77fc6088675dbda83
Author: bv2 <britta.velten@gmail.com>
Date: 2020-10-02 08:35:48 +0200
Commit message:
minor fix and restructuringPackage: MOFA2
Commit: 0534330273cdaaa2fea2e0213bbc2ab6aebe8bf5
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-30 14:54:28 +0200
Commit message:
adapted gradients for sparse GPsPackage: MOFA2
Commit: 7732afae9633a775d0cd3237f5d942827e612d96
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-30 14:36:40 +0200
Commit message:
fixed bugs in gradients (sign, unscaled G)Package: MOFA2
Commit: 49b1989da4fdf7d92dbed1be18ea99c5e9644956
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-30 14:22:16 +0200
Commit message:
cleaned graident functions, disabled gpytorch nodePackage: MOFA2
Commit: 990d7f0bc1aea39655ca2c5a5094768e153e150d
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-30 12:37:34 +0200
Commit message:
corrected gradientsPackage: MOFA2
Commit: 7d91d708da5d3780350f2400155cea5e877c4b82
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-30 09:38:23 +0200
Commit message:
added parameter constraintsPackage: MOFA2
Commit: 1b8b83093cfdbcef1e17b31cc272a6e8992f7b31
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-30 09:07:01 +0200
Commit message:
fidex minor bugsPackage: MOFA2
Commit: a07df10d7fd2531b9f53ff09bd8881bf8b5cf0f4
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-29 16:57:27 +0200
Commit message:
fixed parameter type (list -> array) and zeta to 1-zetaPackage: MOFA2
Commit: 1ac090b3dd14dea78fd678cf6708b79a6645f005
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-29 14:26:17 +0200
Commit message:
added standard MultiTaskModel as alternativePackage: MOFA2
Commit: 0eab9b783cee960048d0a745263099beb7af831c
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-29 13:39:30 +0200
Commit message:
added draft of gpytorch equivalentPackage: MOFA2
Commit: bf50330c13e7e69701b60199c6794c0399626335
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-29 09:54:52 +0200
Commit message:
Merge branch 'MEFISTO' into dev_speedupsPackage: MOFA2
Commit: c5607068225febf096133dd194a1fe62d63dc424
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-29 09:20:33 +0200
Commit message:
updated figure for MEFISTOPackage: MOFA2
Commit: 03a710b0a42a90234c4e59a3b6cbe141cc2b0102
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-29 09:19:27 +0200
Commit message:
updated README for MEFISTOPackage: MOFA2
Commit: 4e71affff07a733a0f2831179555540d58c15b83
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-29 08:34:47 +0200
Commit message:
testing speedups in optimizaiton using gradients or torchPackage: MOFA2
Commit: 4633711d70ce1ea5006686e87376c9eec6c26ee8
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-26 11:26:44 +0200
Commit message:
fixed ordering of groups in R2Package: MOFA2
Commit: 8f65144e966905d365e7c439d5c84dadb356b292
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-23 15:23:30 +0200
Commit message:
fixed minor bug in loading trainstatsPackage: MOFA2
Commit: 636d2986516cb935735dfe077f8d18c10e0dc2ee
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-21 14:25:59 +0200
Commit message:
minor changesPackage: MOFA2
Commit: a67cbe4f72c20cfbcb3bcdb9dc0a64d06c86b8a9
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-15 09:49:12 +0200
Commit message:
minor changesPackage: MOFA2
Commit: bf881605ca6dd51afffb97d92fa3b97f72fb9804
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-15 09:48:45 +0200
Commit message:
avoid storing Kmat when storin spectral decompositionPackage: MOFA2
Commit: 2b0c2f218a6787a71381e29bb44a83a87c0d4437
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-09 10:14:46 +0200
Commit message:
added some more options to extract interpolated factorsPackage: MOFA2
Commit: 8c05bf7edbf84118afc19d14b13bbf5d8a4f9b2e
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-08 14:44:37 +0200
Commit message:
updated docPackage: MOFA2
Commit: e79bb0212bcefbad0fad011e91f1c86b89c8c74e
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-08 14:44:12 +0200
Commit message:
added interpolation functionalities and option to not center groupsPackage: MOFA2
Commit: 0e84f5f3d48de2d5112dd7e99b79033ca300447f
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-03 12:14:34 +0200
Commit message:
minor changesPackage: MOFA2
Commit: e64e1deceadfb5c315631ccf0ffc1cde9b657fb8
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-02 16:42:00 +0200
Commit message:
only diagonal group structure for zero s or lsPackage: MOFA2
Commit: e6443a9296e4ffebf68fb3eab0acb01bf11f38f8
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-02 16:40:42 +0200
Commit message:
fixed inducing points selectionPackage: MOFA2
Commit: 31e47150a22780ca2df32dc760e1ed03750faae5
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-02 14:06:13 +0200
Commit message:
fixed minor bug in selection of inducing pointsPackage: MOFA2
Commit: 94cfd7f34a3a3640a85d60e3639c6c3daf794415
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-02 13:56:50 +0200
Commit message:
drafted sparse GP in conjunction with groupsPackage: MOFA2
Commit: 77bd822c373309f63c2685f024566d0360bf0430
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-02 13:20:55 +0200
Commit message:
added cases for non-identifiable hyperparametersPackage: MOFA2
Commit: e084d0b1da21d90b728870869df51d3b196007df
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-02 12:53:17 +0200
Commit message:
fixed bug in simulation for ls=0Package: MOFA2
Commit: 81e26ec61edb75995986631a2acd9ec868ff0476
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-02 12:44:24 +0200
Commit message:
minor changesPackage: MOFA2
Commit: 6bb20f0ebc0826670453d300a70a572b88d11d84
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-02 11:30:41 +0200
Commit message:
enabled warping in conjunction with model_groupsPackage: MOFA2
Commit: 9e04cd76ae9c2bfea86050672062f917b3e82b34
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-02 11:12:38 +0200
Commit message:
fixed minor bugs and avoid unnecessary (repetitive) updatesPackage: MOFA2
Commit: 4607dd452fb0e0890da8c3f5a5cd9ce6f94c64f6
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-02 09:57:34 +0200
Commit message:
setting negative R2 (missing views) to 0Package: MOFA2
Commit: d42da9956e494634d7e9ae6c874acfedf8e3c99c
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-01 16:39:59 +0200
Commit message:
added documentation for new R functionPackage: MOFA2
Commit: 7d7e8df904978832580d53fa19f1faa1e24a2b54
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-01 16:24:15 +0200
Commit message:
added support for non-Kronecker sample structurePackage: MOFA2
Commit: b997cfa5c1454373075aea2ee2f3a1c6ccc70fb4
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-01 16:23:27 +0200
Commit message:
added group names to KG matrixPackage: MOFA2
Commit: 0ab5c8edad49356bbf72a0e4ca16ac86d79fcd53
Author: bv2 <britta.velten@gmail.com>
Date: 2020-09-01 11:43:47 +0200
Commit message:
added predict function for extra/interpolation of ZPackage: MOFA2
Commit: 4f34255d9077a22d07461a2b4c9b74408fccf709
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 17:15:53 +0200
Commit message:
added Kg of 1s if no group modellingPackage: MOFA2
Commit: a1a7d6e6a82b355fabf7d7a84ec04637fa17a2fe
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 16:59:19 +0200
Commit message:
variable rank of Kg, passing Kg to save and fixing parameters for ls0Package: MOFA2
Commit: 844bcc8469a4493d5d0e58c5f1d2d7b714d6936b
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 16:54:15 +0200
Commit message:
scaling Kg to correlation matrixPackage: MOFA2
Commit: 14bb6690405465f75e09441e452e4f226edebbd8
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 16:52:17 +0200
Commit message:
use 0/1 for Kg in simulationsPackage: MOFA2
Commit: f013a65137ecd05ee1a3109841d50bacad142b8a
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 16:51:37 +0200
Commit message:
saving GP hyperparameters at end of trainingPackage: MOFA2
Commit: 59e84edb4d73737cbfa47c67c969363beca54b4c
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 16:50:09 +0200
Commit message:
passed GP hyperparameters to RPackage: MOFA2
Commit: 87a9e6ef516c6b9d214bdc9d15b374b137134b6e
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 11:47:15 +0200
Commit message:
renamed Sigma nodePackage: MOFA2
Commit: f2d2bf52a6ecceb02df4d551a8aa2865e776db9c
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 11:37:46 +0200
Commit message:
minor changePackage: MOFA2
Commit: 17d8ab4aa13d672aca5adc02fbd91dbf80ff489f
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 11:34:43 +0200
Commit message:
replaced old Sigma nodePackage: MOFA2
Commit: 77b06115bf8d9b30eadb41d3455f4f90f63fcae8
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 11:33:59 +0200
Commit message:
replaced old Sigma nodePackage: MOFA2
Commit: d2198894f78aa33c0cebea1887bf8e66d2b9e4f6
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 11:25:26 +0200
Commit message:
fixed bug in inducing point gridPackage: MOFA2
Commit: 6961f9927126f0a8aafbb52ef0a0f67cb2fb411c
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-31 11:07:10 +0200
Commit message:
fixed bug in new Sigma node with sparse GPsPackage: MOFA2
Commit: 7943d92edeadb7ce29426a2e0e8774d05624c5e9
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-28 11:39:10 +0200
Commit message:
generalized kronSigma node to use for all models, cleaned up (Alpha-suff, kernel functions)Package: MOFA2
Commit: 7eab0d5eb07f7c5c83a24d63a5840e2d98ff8dc5
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-28 10:50:19 +0200
Commit message:
improved doc + namesPackage: MOFA2
Commit: 4d70171b6808e56dc19b1a88626570ebf2dfb66f
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-28 10:49:16 +0200
Commit message:
uncluttered training/model options and statsPackage: MOFA2
Commit: 482049a38883c1488cbf9b557717cfadfe7e5881
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-27 14:54:23 +0200
Commit message:
set option to add non-constant digaonal in group kernelPackage: MOFA2
Commit: b19a8b1da714f7623720dbda957af65f3b419ae3
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-27 10:43:39 +0200
Commit message:
fixed bugs in marginal covariance (pytorch) and bounds (kronSigma)Package: MOFA2
Commit: f71c8c7ead02f8ad4fe3b383e83ad8a81bfdcc05
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-26 16:58:30 +0200
Commit message:
fixed bug in Sigma calculation (order of kron)Package: MOFA2
Commit: 1149935f2659f204edfa934fd10b79f7d0af0e7c
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-26 14:28:11 +0200
Commit message:
added experimental gpytorch Sigma nodePackage: MOFA2
Commit: 42dcdc4672f658c7af1093640e46f3bd338e3709
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-25 14:38:19 +0200
Commit message:
added group structure draft, fixed bug in det in ELBO_Z and removed univ_Znode optionPackage: MOFA2
Commit: fa8136be44021700ee36a75fdb29b87de2acf4e4
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-21 09:46:56 +0200
Commit message:
added hyperparameter opt options, disentangling scale and lsPackage: MOFA2
Commit: c9579e8eedac70342b8763d8673fa1e70be83c9d
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-19 09:07:10 +0200
Commit message:
removed NA row from scales and lscales if maxiter is reachedPackage: MOFA2
Commit: c4b765033d0ad119979d77400e4773e4cdb2f553
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-14 08:34:40 +0200
Commit message:
minor changePackage: MOFA2
Commit: df7c0feffd3f833d2972d3b5152f43ac9a8521b4
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-13 11:15:30 +0200
Commit message:
added names and subsetting for scalesPackage: MOFA2
Commit: 383dcd1290c26228c004ff6f07a7148c89751818
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-13 08:49:21 +0200
Commit message:
made masking of outliers in imputation optionalPackage: MOFA2
Commit: 89485a2dd1b146736f1c0b4a94c56f244b383a86
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-12 12:30:41 +0200
Commit message:
changed zeta initPackage: MOFA2
Commit: 7b22c07b4ce48d09553f81f57c73ebc27bf271ed
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-11 14:03:51 +0200
Commit message:
minor changes to vignettePackage: MOFA2
Commit: 839149e3b602233293665c2f61b15642b905d327
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-11 10:30:12 +0200
Commit message:
adapted simulation to multiple groups and varying scalesPackage: MOFA2
Commit: 4e9642a6ab5fa3e03097fda073aa2ad8e495df4e
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-10 13:51:57 +0200
Commit message:
use consistent defaults in python and RPackage: MOFA2
Commit: 930d4a004cf72f117573933f1108897605e6be56
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-10 13:42:09 +0200
Commit message:
changed defaults to warping + opt in same stepPackage: MOFA2
Commit: 2e27e1427b7d9ebb49c232014ba0ba79b67f51f2
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-10 12:48:44 +0200
Commit message:
fixed bugs in alignmentPackage: MOFA2
Commit: a9c88f54605c2831f051f0c2885ebaa416de2c44
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-10 11:28:57 +0200
Commit message:
fixed bugs in sparse Sigma version and removed 0 lengthscalePackage: MOFA2
Commit: b4fc88473af28a3e175d888cef17befad4a92ca1
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-07 15:31:38 +0200
Commit message:
passed opt_freq as paramaterPackage: MOFA2
Commit: 7d19da61594a4dcbec8deb16c40a067d6fe445a1
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-07 15:14:46 +0200
Commit message:
removed smooth_all option, added scale to train_statsPackage: MOFA2
Commit: d898e604bd64c5d5e47e4a042f4b4cdfb1c768e4
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-07 14:37:34 +0200
Commit message:
added optimization of zeta using optimizePackage: MOFA2
Commit: 293c1f573b2b1e35a0064747dc180758cb38e1a0
Author: bv2 <britta.velten@gmail.com>
Date: 2020-08-07 14:32:20 +0200
Commit message:
reduced default number of grid pointsPackage: MOFA2
Commit: fc4ec369ad6c76ed7c0e89d2f0859ada08df961a
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-17 11:49:27 +0200
Commit message:
fixed bug in dropping factorPackage: MOFA2
Commit: 7629ef95e25816074e1e7501a8cc4d74d9817b48
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-17 11:36:32 +0200
Commit message:
added sanity check on reference groupPackage: MOFA2
Commit: ad52c3115b5b2b4f1ef5c84b40d9314b94bd648b
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-17 11:27:00 +0200
Commit message:
added opt_freq parameter for Sigma and cleaned TODOsPackage: MOFA2
Commit: 84713af15f10f29ca8aeb21c1d50453941790f77
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-17 09:42:29 +0200
Commit message:
added optimization of scale parameterPackage: MOFA2
Commit: e684d094af2b3f9b102718c9acebc944e5f3037f
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-14 13:15:10 +0200
Commit message:
fixed lineplot vs cov for multiple samples at same valuePackage: MOFA2
Commit: 5b5e87874b78a740b304091226ad4cb2e43d659b
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-14 11:29:07 +0200
Commit message:
fixed minor bugs in alignmentPackage: MOFA2
Commit: 055645da720941db042203f2af0eb798a7eb28e9
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-14 09:33:57 +0200
Commit message:
passed options for partial alignmentPackage: MOFA2
Commit: c2e5fa7bf9e50b84ae7664ea8d37feba027a79cd
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-14 09:14:40 +0200
Commit message:
fixed order of samples and allow partial mapping in alignmentPackage: MOFA2
Commit: c261caf5a3e0b7bb265423cdb0b789d665b6f224
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-11 09:05:13 +0200
Commit message:
fixed bug in loading sample_cov from dfPackage: MOFA2
Commit: 13f5c0538583449a8197c50b77b69cbba3a5a5b5
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-10 10:52:01 +0200
Commit message:
implemented two warping strategies (dtw, linear)Package: MOFA2
Commit: f4ad918d03045b165ea151cf4f6d7bd0790ab34e
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-10 10:50:51 +0200
Commit message:
updated docPackage: MOFA2
Commit: b9f431547e844abc2a27f40ac46b7bd6aa3fea08
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-10 10:45:00 +0200
Commit message:
fixed colours in plot_data_overviewPackage: MOFA2
Commit: 8c4e6112e6b9bb5be979d53613acd8ace3ecef91
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-06 17:39:31 +0200
Commit message:
minor changesPackage: MOFA2
Commit: 77655da12bea701607fa9d75cac4f3cefae25146
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-06 10:52:27 +0200
Commit message:
deactivated ARD Z for GPPackage: MOFA2
Commit: 219cbd0f08b2e8e3387feb53549d9f096890b7b1
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-02 17:52:00 +0200
Commit message:
updated documentationPackage: MOFA2
Commit: 18e7d3c6d31535b5688641d0615451e13d6b9e56
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-02 15:56:01 +0200
Commit message:
added data_vs_cov scatter plot function and fixed imputation option for data scattersPackage: MOFA2
Commit: 7ed4954235d0e8aedebe4954ae3f6ce5a39d7722
Author: bv2 <britta.velten@gmail.com>
Date: 2020-07-02 11:24:18 +0200
Commit message:
implemented ARD_Z and weights for GP nodesPackage: MOFA2
Commit: e9e4397f5c6e1c5b4525d1691577c121c6bdf37b
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-30 17:14:44 +0200
Commit message:
enabled smooth_all optionPackage: MOFA2
Commit: 68a4c71cdeea9d84e553cd973ca5d04636b4205c
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-30 17:14:30 +0200
Commit message:
fixed get_data for missing groupsPackage: MOFA2
Commit: aa0b145dd082b4eeeea82b53110fdbe052b20f51
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-30 14:13:37 +0200
Commit message:
minor fixPackage: MOFA2
Commit: 09cf45cec0e997c8d751856a57c1df4249374fc5
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-30 13:11:11 +0200
Commit message:
fixed sorting and R2 calc for missing groups and no ARD_ZPackage: MOFA2
Commit: ebe4dce5836c6521f9a0737bba084a3f7f75d1ab
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-30 09:48:05 +0200
Commit message:
fixed passing covariate as data.frame columnsPackage: MOFA2
Commit: 087ab0a16234901121f24c890351197257a9b039
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-30 09:34:19 +0200
Commit message:
renamed covariate argument in create_mofaPackage: MOFA2
Commit: 24d8352170cf71566d33230c84004740438bee60
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-30 09:13:28 +0200
Commit message:
added covariates to data overview plotPackage: MOFA2
Commit: ab740915aea291cb244cc298caf720f6a9ca51c0
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-29 18:11:18 +0200
Commit message:
fixed bug when dropping factorsPackage: MOFA2
Commit: 43b8758e3d9e04811b4bb3e2b2aeb87c28491179
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-29 17:52:23 +0200
Commit message:
fixed SMOFAvignettesPackage: MOFA2
Commit: 09f3cd82994e2cf3db922e3f03c9b98614757cfb
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-29 15:09:48 +0200
Commit message:
fixed covariate passing and running MOFA from RPackage: MOFA2
Commit: b2ce11c86e868e5169346eabeae85ad4af5cdae6
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-26 14:49:06 +0200
Commit message:
fixed module namesPackage: MOFA2
Commit: 4c0e7a47e20a31ff0d11c10817bda1c6c894ceee
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-26 10:57:05 +0200
Commit message:
added message when using sample_cov for loom and anndataPackage: MOFA2
Commit: ea59c9e36481dae59c84cda45eda70c92ce1c723
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-26 10:14:08 +0200
Commit message:
debugged passing covariates as dataframePackage: MOFA2
Commit: 9c38a3cf1930318c6f65e07f88cb42c9dbc857f5
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-25 11:17:00 +0200
Commit message:
debugged python module for use with matrix listsPackage: MOFA2
Commit: 1bb4d55799f013e33b478eeb7a585d9717adb98f
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-25 09:36:44 +0200
Commit message:
made factor prior options mutually exclusivePackage: MOFA2
Commit: 1175bb4f45d7d26823ef864ef4585c1c4ff8efa1
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-25 09:27:24 +0200
Commit message:
adapted template scripts for R to SMOFAPackage: MOFA2
Commit: 956f2e4d29abf1eaa2a5150734ebc9090e49326f
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-25 09:10:39 +0200
Commit message:
removed old template scriptPackage: MOFA2
Commit: 083241d5c2ed19a5261d9391fcd0082146468db8
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-25 09:10:05 +0200
Commit message:
fixed minor bugs and merged python template_scriptPackage: MOFA2
Commit: 46f29b34b75a461df3d022d39e11f9b8c5a39fdf
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-23 15:26:46 +0200
Commit message:
fixed bugs from merge and updated documentationPackage: MOFA2
Commit: cfc920b9cf4bb7855c9ce2eb0d26f3dc38e5fa1a
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-23 15:16:40 +0200
Commit message:
extended R part to SMOFA - missing filesPackage: MOFA2
Commit: 47103d82f7361274213b61553e369f88db07496a
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-23 14:22:37 +0200
Commit message:
added template and simulation scripts for SMOFAPackage: MOFA2
Commit: 3ee95c7f7e4f8a978c8413a56ec5e1b1c709726c
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-23 14:20:12 +0200
Commit message:
adapted entrypoint for SMOFAPackage: MOFA2
Commit: 105fa291c3d00987e2d60b56263a43ab0dbc1cec
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-23 14:04:22 +0200
Commit message:
added new nodes for SMOFAPackage: MOFA2
Commit: 96bbd2f3337b301f9dffb71a60a0f92aaac25b0a
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-23 14:03:39 +0200
Commit message:
extended mofapy2 core to SMOFAPackage: MOFA2
Commit: a467fe5e1e573f9157521f5d44af15f2f2a6aca3
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-23 13:42:00 +0200
Commit message:
extended build_model to SMOFAPackage: MOFA2
Commit: d7af8f779c0a43c46aa5589d5a0fe6baeb8204b8
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-23 11:00:35 +0200
Commit message:
adapted package sidestuff to include SMOFAPackage: MOFA2
Commit: e3bf863fbae29ee23c746ac081658e0b5cb397a8
Author: bv2 <britta.velten@gmail.com>
Date: 2020-06-23 10:40:50 +0200
Commit message:
integrated SMOFA into MOFA - R partPackage: GDCRNATools
Commit: 27e91b82b79a9267e9448d4d6a1515822e99cd8c
Author: Ruidong Li <rli012@ucr.edu>
Date: 2020-11-24 23:27:44 -0800
Commit message:
version bumpPackage: GDCRNATools
Commit: 214cc5d7ce8706feb1bbaa162ed099c6a9ac9be6
Author: Ruidong Li <rli012@ucr.edu>
Date: 2020-11-24 23:26:19 -0800
Commit message:
gdc-client v1.6.0Package: GDCRNATools
Commit: 43ddf6525cde78f6d4fc2bdecba930320a3a1d7f
Author: Ruidong Li <rli012@pelican.ib.hpcc.ucr.edu>
Date: 2020-11-24 23:10:18 -0800
Commit message:
Merge remote-tracking branch 'upstream/master'Package: GDCRNATools
Commit: dae8968829b36e5aa6b7a58af637b15d072c8a61
Author: Jialab-UCR <jialab.ucr@gmail.com>
Date: 2020-01-29 12:06:34 -0800
Commit message:
1.3 to 1.4Package: Rsubread
Commit: 46dcfecbbda45b4dcc93ec35c67e8350e7747e84
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2020-11-25 15:35:06 +1100
Commit message:
just minor changes.Package: Rsubread
Commit: d416dc8982b07abb5e7836e8955389162e80075f
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2020-11-25 14:52:19 +1100
Commit message:
start writting BAM and FASTQPackage: preprocessCore
Commit: 6b016db3871f58b9fd21b72d02f423181fc6236f
Author: Ben Bolstad <bmb@bmbolstad.com>
Date: 2020-11-24 08:02:23 -0800
Commit message:
disable use of __pthread_get_minstack which is non public symbol (this may be a temporary fix)Package: MethylSeqData
Commit: c1b25727efb672562682aba3db4664d38e410861
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2020-11-25 11:59:48 +1100
Commit message:
Correct data in vignettePackage: epihet
Commit: eb4c259224015d97a357c95350fc4e5bdc851cb5
Author: Xiaowen Chen <chenx@helix.(none)>
Date: 2020-11-24 19:12:51 -0500
Commit message:
Fixed conflicts in version changePackage: epihet
Commit: 553ed095b10e1dd6e1fa987334dd2ca2a5254dc4
Author: xiaowen chen <30912295+xiaowenchenjax@users.noreply.github.com>
Date: 2020-11-24 19:10:17 -0500
Commit message:
Update DESCRIPTIONPackage: epihet
Commit: c3e3a65056ea9fddd1e032fdb63c178039a8e92a
Author: xiaowen chen <30912295+xiaowenchenjax@users.noreply.github.com>
Date: 2020-11-24 18:57:17 -0500
Commit message:
Update DESCRIPTIONPackage: epihet
Commit: e5d37880c162d153175dc9f9ea7c96f5994fb927
Author: xiaowen chen <30912295+xiaowenchenjax@users.noreply.github.com>
Date: 2020-11-24 18:52:42 -0500
Commit message:
Update DESCRIPTIONPackage: epihet
Commit: a33c45a323669ba4720b3887bcd76a9f9453f1e5
Author: xiaowen chen <30912295+xiaowenchenjax@users.noreply.github.com>
Date: 2020-11-24 11:14:06 -0500
Commit message:
Update epihet.RnwPackage: epihet
Commit: b0c6a74f4bb56f093b8049dabb86aa87559e3ed9
Author: xiaowen chen <30912295+xiaowenchenjax@users.noreply.github.com>
Date: 2020-11-24 10:51:09 -0500
Commit message:
Update epiPathway.RdPackage: epihet
Commit: 54534edc40203d11eab2eba446ee968731976ea6
Author: xiaowen chen <30912295+xiaowenchenjax@users.noreply.github.com>
Date: 2020-11-24 10:45:56 -0500
Commit message:
Update epiPathway.RdPackage: epihet
Commit: fb20b8173e9bd77c25d3b59892e2134537203f8b
Author: xiaowen chen <30912295+xiaowenchenjax@users.noreply.github.com>
Date: 2020-11-24 10:39:34 -0500
Commit message:
Update epiPathway.RPackage: flowGraph
Commit: a84c37449d7f154710b928931c3e0b9b81bcf62a
Author: aya43@sfu.ca <aya43@sfu.ca>
Date: 2020-11-24 16:00:23 -0800
Commit message:
R version bumpPackage: rcellminer
Commit: 6e9266a10c911256467a6878795395039544e9c0
Author: Elloumi <elloumif@nci-02048674-ml.nih.gov>
Date: 2020-11-24 18:15:38 -0500
Commit message:
merge origin and upstream for master branchPackage: rcellminer
Commit: 684148d616eed47da6f0e82b6c02c77aedf86705
Author: Elloumi <elloumif@nci-02048674-ml.nih.gov>
Date: 2020-11-24 18:09:09 -0500
Commit message:
new version number matching bioconductorPackage: rcellminer
Commit: aa92d58eabcc3ce1d132ed889b0ae2c14414dfab
Author: Elloumi <elloumif@nci-02048674-ml.nih.gov>
Date: 2020-10-02 14:29:59 -0400
Commit message:
Removed 3 shiny appsPackage: rcellminer
Commit: c3b62c01a77d4d49ae45f5175518e28d2e717e9e
Author: Elloumi <elloumif@nci-02048674-ml.nih.gov>
Date: 2020-09-02 17:07:44 -0400
Commit message:
Merge branch 'nojdk'Package: rcellminer
Commit: b2a816205fbc19e61e1b2b4b553a7b0972d60af4
Author: Elloumi <elloumif@nci-02048674-ml.nih.gov>
Date: 2020-08-25 09:42:28 -0400
Commit message:
updated MOA keysPackage: flowGraph
Commit: 6c2f3a2b82e346f2c31301dc312c75e5d6ddc55f
Author: aya43@sfu.ca <aya43@sfu.ca>
Date: 2020-11-24 15:14:00 -0800
Commit message:
R version bumpPackage: flowGraph
Commit: 032368c7f2297df7986abe592b38137f8d956d0f
Author: aya43@sfu.ca <aya43@sfu.ca>
Date: 2020-11-24 15:10:46 -0800
Commit message:
R version bumpPackage: flowGraph
Commit: b266bc767dead381484ec686cc4975e3a74ad773
Author: aya43@sfu.ca <aya43@sfu.ca>
Date: 2020-11-24 14:35:45 -0800
Commit message:
R version bumpPackage: flowGraph
Commit: 41f6e2af20e4958b8381a4044c37d5c555b40d7f
Author: aya43@sfu.ca <aya43@sfu.ca>
Date: 2020-11-24 14:17:55 -0800
Commit message:
R version bumpPackage: rSWeeP
Commit: 965d5f139b009f2d375d6d652c87148027ef0b1b
Author: DanrleyRF <danrleyrf@gmail.com>
Date: 2020-11-24 17:50:37 -0300
Commit message:
Update version bumpPackage: rSWeeP
Commit: b1c1f71a083311128ba494d5e7949e90155bf8cd
Author: DanrleyRF <danrleyrf@gmail.com>
Date: 2020-11-24 17:45:31 -0300
Commit message:
Update version bumpPackage: rSWeeP
Commit: 56347384a28b2d1aa71504ca0f32caa07f457894
Author: DanrleyRF <danrleyrf@gmail.com>
Date: 2020-11-24 17:34:24 -0300
Commit message:
Version bumpPackage: rSWeeP
Commit: 888953082f363cad6f7384fde15d656d7c021f05
Author: DanrleyRF <danrleyrf@gmail.com>
Date: 2020-11-24 17:33:11 -0300
Commit message:
Bug fixPackage: flowGraph
Commit: 768f16bd29ae0aab2b650db25fcf8eb23e1e7af6
Author: aya43@sfu.ca <aya43@sfu.ca>
Date: 2020-11-24 12:30:49 -0800
Commit message:
update notesPackage: preciseTAD
Commit: 8ca9dd519adabc6fb03037b647113838212c81bf
Author: stilianoudakis <stilianoudasc@mymail.vcu.edu>
Date: 2020-11-24 15:23:44 -0500
Commit message:
version bumpPackage: preciseTAD
Commit: b5f2e1857df47c1c45a1947448622c1c2f06fcc3
Author: stilianoudakis <stilianoudasc@mymail.vcu.edu>
Date: 2020-11-24 15:00:41 -0500
Commit message:
added column namesPackage: DelayedArray
Commit: f1279e072d94793add8ba65f281def5a967a4406
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2020-11-24 12:20:16 -0800
Commit message:
cbind()/rbind() no longer coerce supplied objects to type of 1st objectPackage: Gviz
Commit: c5aa4ed665a4d0b5a71fe0653e9684c2f327178e
Author: Robert Ivánek <robert.ivanek@unibas.ch>
Date: 2020-11-23 11:29:16 +0100
Commit message:
version bumpPackage: Gviz
Commit: bfe10e3f6c5c10ba4fdead33984e5e0503afeb5e
Author: Robert Ivánek <robert.ivanek@unibas.ch>
Date: 2020-11-23 11:25:39 +0100
Commit message:
Clean-up after defunctPackage: Gviz
Commit: c63bb8de3ccbdfec44e9407275ce5f23a6fadf97
Author: Robert Ivánek <robert.ivanek@unibas.ch>
Date: 2020-11-20 23:58:38 +0100
Commit message:
Deprecated -> DefunctPackage: DelayedArray
Commit: 8623979c85fff8be8721845981ba1673d6b8ff83
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2020-11-24 10:25:50 -0800
Commit message:
Make sure subsetting of a DelayedArray object always propagates the names/dimnames, even when drop=TRUE and the result has only 1 dimension This addresses https://github.com/Bioconductor/DelayedArray/issues/78.Package: HPAanalyze
Commit: 9ae741a80b03c58dccfe941a2d09ccce83e31e42
Author: Anh Tran <trannhatanh89@gmail.com>
Date: 2020-11-24 11:50:29 -0600
Commit message:
Update the built-in dataset to v20Package: HPAanalyze
Commit: e785b3d9b30bd36740250ae803430a9f68116f53
Author: Anh Tran <trannhatanh89@gmail.com>
Date: 2020-11-24 11:42:27 -0600
Commit message:
Fix error where rna_tissue_concensus.tsv could not be foundPackage: phosphonormalizer
Commit: 996a802ad03e7c22c061522cdcc91bb3b6d5bd96
Author: sohrab.saraei <sohrab.saraei@blueprintgenetics.com>
Date: 2020-11-24 19:13:24 +0200
Commit message:
phosphonormalizer: version bumpPackage: phosphonormalizer
Commit: 020afc9edead1bf372c79baadbf24ab29a2d25cd
Author: sohrab.saraei <sohrab.saraei@blueprintgenetics.com>
Date: 2020-11-24 19:08:58 +0200
Commit message:
RELEASE_3_12: phosphonormalizer version bumpPackage: phosphonormalizer
Commit: d246d440aeb908759a47693c5aa09d0261bfa488
Author: sohrab.saraei <sohrab.saraei@blueprintgenetics.com>
Date: 2020-11-24 18:42:43 +0200
Commit message:
RELEASE_3_12: phosphonormalizer: maintainer email updatedPackage: phosphonormalizer
Commit: 9e477386f18d3f5d9723a9b66cf503634f0d982c
Author: sohrab.saraei <sohrab.saraei@blueprintgenetics.com>
Date: 2020-11-23 15:33:10 +0200
Commit message:
RELEASE_3_12: addressing the problem with conditionPackage: preciseTADhub
Commit: 0e9265d5d456460c0fc2fdaf0382f54495bd50c0
Author: stilianoudakis <stilianoudasc@mymail.vcu.edu>
Date: 2020-11-24 12:09:47 -0500
Commit message:
version bumpPackage: preciseTADhub
Commit: afed93a2fc695bd05abd86e59e8399e78bf592fd
Author: stilianoudakis <stilianoudasc@mymail.vcu.edu>
Date: 2020-11-24 12:09:11 -0500
Commit message:
fixed errors in vignette from readEH functionPackage: preciseTADhub
Commit: 818e7da725249b57f54c6f602afce1eb7923f35d
Author: stilianoudakis <stilianoudasc@mymail.vcu.edu>
Date: 2020-11-24 10:56:14 -0500
Commit message:
added wrapper function to R folder, fixed biocviews, version bumpPackage: easyreporting
Commit: b16b1cef6c25e6511fd8d7ae49e80725d76d2399
Author: Dario <dario.righelli@gmail.com>
Date: 2020-11-24 16:37:47 +0100
Commit message:
bumping versionPackage: easyreporting
Commit: d69ff8b932d6b36b156ea4cdd8e868f466192f9b
Author: Dario <dario.righelli@gmail.com>
Date: 2020-11-24 16:36:20 +0100
Commit message:
some fixingPackage: densvis
Commit: bdf1edb28dec65367fa2a10aad4d9f6de2ac51fd
Author: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Date: 2020-11-24 13:54:20 +0000
Commit message:
Merge branch 'master' of git.bioconductor.org:packages/densvisPackage: densvis
Commit: ef0ad3cd654dd8d18d7d17779ce1bb44da22986c
Author: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Date: 2020-11-24 13:53:31 +0000
Commit message:
Merge branch 'RELEASE_3_12'Package: densvis
Commit: 4de114e312efc725955c94d42cf25eb93effb5ed
Author: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Date: 2020-11-24 13:52:55 +0000
Commit message:
v1.0.4; Correct labels in vignettePackage: densvis
Commit: 124978e24bec4bd955b7a519465fcc3c1d3096b5
Author: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Date: 2020-11-20 20:19:00 +0000
Commit message:
Version 1.00.3; densmap 0.2.2 on pypiPackage: densvis
Commit: e3d319bebc92f7793df636e0e0897986898dd048
Author: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Date: 2020-11-20 19:52:48 +0000
Commit message:
Bump densmap versionPackage: densvis
Commit: 15831626401357381f224485709641c5933ecfdb
Author: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Date: 2020-11-19 03:32:19 +0000
Commit message:
Bugfix relating to errant parallelisationPackage: densvis
Commit: e8993d0bc2183cfa081c07c7deb7d35b70427a78
Author: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Date: 2020-11-19 03:32:19 +0000
Commit message:
Bugfix relating to errant parallelisationPackage: densvis
Commit: 561852a84405cb4eeb474cc174697fe0e7935ece
Author: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Date: 2020-10-28 20:59:48 +0000
Commit message:
Uneven version in develPackage: densvis
Commit: db1997b56ecc5fafcd577bf03ae7b5447ba63ab7
Author: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Date: 2020-10-28 20:58:25 +0000
Commit message:
Correct citation and license informationPackage: epiNEM
Commit: c952711e8e29e6843e6bb18e1d3ef43adc8d2c86
Author: mpirkl <martin.pirkl@bsse.ethz.ch>
Date: 2020-11-24 14:08:01 +0100
Commit message:
fixed colorkey=NULLPackage: easyreporting
Commit: 7f2dbec2ab4657eb8f93e2d8393d7e5ef1e48aef
Author: Dario <dario.righelli@gmail.com>
Date: 2020-11-24 11:31:50 +0100
Commit message:
ignore filePackage: easyreporting
Commit: ec7d278485cccf9dd6265588242996f90620c459
Author: Dario <dario.righelli@gmail.com>
Date: 2020-11-24 11:31:22 +0100
Commit message:
adding volcano shiny appPackage: DelayedMatrixStats
Commit: f2a05aea8fd61c8c120e0cbfec5fbc3286299c81
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2020-11-24 20:52:51 +1100
Commit message:
Merge pull request #69 from hpages/master Fix 2 issues with how the 'center' argument is handledPackage: DelayedMatrixStats
Commit: 84f344cbc84da5b54dde5f2a97227be90425a410
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2020-11-23 21:58:27 -0800
Commit message:
Fix 2 issues with how the 'center' argument is handled See https://github.com/PeteHaitch/DelayedMatrixStats/issues/68 for the details.Package: BiocStyle
Commit: 42e9365b9d46c4e62b9be53fb6438ad9c69370de
Author: Mike Smith <grimbough@gmail.com>
Date: 2020-11-24 10:50:38 +0100
Commit message:
Add NEWS entryPackage: BiocStyle
Commit: c47acf3546252039e4eb327abe8f09258ab08fe1
Author: Mike Smith <grimbough@gmail.com>
Date: 2020-11-24 10:33:21 +0100
Commit message:
Merge pull request #84 from grimbough/out-width Patch issue with out.width for smallfigure and widefigure environmentsPackage: BiocStyle
Commit: 40c40043e783fbf656827750d1a09e4abfec9214
Author: Mike Smith <grimbough@gmail.com>
Date: 2020-11-24 10:23:37 +0100
Commit message:
remove commented out codePackage: BiocStyle
Commit: f8ec81f1bd1c2c33f97f3f40a04319fbf7432c57
Author: Mike Smith <grimbough@gmail.com>
Date: 2020-11-23 14:25:35 +0100
Commit message:
Remove out.width argument committed by mistakePackage: BiocStyle
Commit: b3e36d002aac1adcba2be3a0d57a8d460c05922f
Author: Mike Smith <grimbough@gmail.com>
Date: 2020-11-23 14:18:15 +0100
Commit message:
Patch issue with out.width for smallfigure and widefigure environmentsPackage: scran
Commit: 84954b7b9bd07a63486bbfcace491390dea75c28
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-23 23:41:51 -0800
Commit message:
Deprecated combinePValues in favor of metapod::combineParallelPValues. Updated tests.Package: scran
Commit: 868f286c6384295507352904608af2076206ef60
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-08 00:36:05 -0800
Commit message:
Catch warnings in pairwise* tests, minor streamlining.Package: metapod
Commit: f2d71c7d693bf7e25ed8a67e775549d8475f4eef
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-24 00:48:54 -0800
Commit message:
Throw error from non-finite weights.Package: metapod
Commit: d06b6a537f231d1cf322025f959957a255a3aec1
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-24 00:23:56 -0800
Commit message:
Bugfixes for correct Stouffer edge cases when log.p=TRUE.Package: metapod
Commit: f6d9a98721ec98371bd32d1e879e0ebbf2851c9f
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-23 23:16:53 -0800
Commit message:
Cleaned up documentation on wrappers.Package: beachmat
Commit: 67dc7df4974c84a00053eef3f0132dfb8b89b940
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-23 21:49:03 -0800
Commit message:
More efficient fallback for blockApply when DA is pristine. Updated tests for more thorough checks.Package: Rsubread
Commit: 805c98279416ec90b94f3f5538a3fa2bdc2c8889
Author: Yang LIAO <yang.liao@onjcri.org.au>
Date: 2020-11-24 17:06:25 +1100
Commit message:
Parallel gzipPackage: Rsubread
Commit: 7220ee3ed80d2180d6ddfdec3f0e5e98ca448216
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2020-11-24 15:49:12 +1100
Commit message:
added comments to the junction-read assignmentPackage: Rsubread
Commit: 360566014b3ecfa3cb54d0f3cb3d72e82e4eabbd
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2020-11-24 15:16:04 +1100
Commit message:
Moved junction read counting after basic read filters.Package: Rsubread
Commit: 29a443da089fe45b1b7fb8d63b0f72f593466137
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2020-11-24 14:37:58 +1100
Commit message:
added parallel bam sortingPackage: EnrichmentBrowser
Commit: 8a666da69e0d842c14959d2c57b0eed537223d39
Author: lgeistlinger <ludwig.geistlinger@bio.ifi.lmu.de>
Date: 2020-11-23 18:44:02 -0500
Commit message:
getGenesets: sync with msigdbr updatesPackage: flowAI
Commit: f91149db132db2c9f243c4de7594461eab042583
Author: Gianni <mongianni1@gmail.com>
Date: 2020-11-23 23:36:11 +0100
Commit message:
anomaly detection zerosPackage: SQLDataFrame
Commit: 0a90071a41afd81824d4da0ebeaff02dc72bf378
Author: Qian Liu <qliu7@buffalo.edu>
Date: 2020-11-23 17:16:19 -0500
Commit message:
fixing mysql and bigrquery code in vignettePackage: diffcoexp
Commit: 2fed67b6aa0865010750664d4c8e3eca63bc661a
Author: Wenbin Wei <wenbinwei@da-bsc-44.home>
Date: 2020-11-23 16:17:32 +0000
Commit message:
Updated maintainer's email address.Package: diffcoexp
Commit: 563ddc806420b104e19b02e99dd067d4e4a85f20
Author: Wenbin Wei <wenbinwei@da-bsc-44.home>
Date: 2020-11-23 13:07:45 +0000
Commit message:
Merge remote-tracking branch 'upstream/master'Package: diffcoexp
Commit: 4ea9774972c3923b6307c65fa68aeef27d1db332
Author: wenbinwei <W.Wei@sheffield.ac.uk>
Date: 2019-05-15 14:39:13 +0100
Commit message:
Updated version number.Package: diffcoexp
Commit: 982d1821a77024dfec5e59f0cd8ca5d4204a2cf6
Author: Wenbin Wei <W.Wei@sheffield.ac.uk>
Date: 2019-05-15 13:34:25 +0100
Commit message:
Merge pull request #2 from dktanwar/master updated diffcor function to resolve an errorPackage: diffcoexp
Commit: bb822e40a810d4c9008e8bdc0e814dfe8264193b
Author: Deepak Tanwar <dktanwar@hotmail.com>
Date: 2019-05-15 08:50:48 +0200
Commit message:
updated diffcor function to resolve an errorPackage: dittoSeq
Commit: 07dfcaae85f1189c4dc0ec3f98ca010084490016
Author: dtm2451 <Daniel.Bunis@ucsf.edu>
Date: 2020-11-23 10:20:13 -0800
Commit message:
Version Bump & NEWS UpdatePackage: dittoSeq
Commit: 5515d8bb36c2cd59d2b253ae8b50ded8b6464e80
Author: Daniel Bunis <daniel.bunis@ucsf.edu>
Date: 2020-11-23 10:16:47 -0800
Commit message:
Bug Fix: keep `split.by` factor level order when used with `do.label` (#66)Package: PharmacoGx
Commit: eeee68a021549bdfab23e85cdf57c15ae54a52cc
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2020-11-23 13:16:15 -0500
Commit message:
Fix: type in downloadPertSig docs; version bump for Bioc pushPackage: PharmacoGx
Commit: 26c3cbc22b6aab1bedfde61f6f2ba0539455e03c
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2020-11-23 13:13:50 -0500
Commit message:
Add: NAMESPACE and man/Package: PharmacoGx
Commit: 874e2d2f4e14022e6efa7715a54af2e45e9fe812
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2020-11-23 13:13:29 -0500
Commit message:
Fix: downloadPertSig was failing due to download timeout, now temporarily changing timeout inside the functionPackage: preciseTADhub
Commit: fc6c30e89d5db21cbc65bc1a2462dd9e1fb84743
Author: stilianoudakis <stilianoudasc@mymail.vcu.edu>
Date: 2020-11-23 12:51:09 -0500
Commit message:
removed .Rproj, version bumpPackage: preciseTADhub
Commit: c3edbe951e8e962c1e125145c63208abcee13a9a
Author: stilianoudakis <stilianoudasc@mymail.vcu.edu>
Date: 2020-11-23 12:49:31 -0500
Commit message:
took out experimenthub from biocviewsPackage: preciseTADhub
Commit: 640e9a6788af3d72b4e3b468b68afe28b5773093
Author: stilianoudakis <stilianoudasc@mymail.vcu.edu>
Date: 2020-11-23 12:18:28 -0500
Commit message:
changed R version; version bump; edits to vignettePackage: PharmacoGx
Commit: b589c15c1b9f7c150711354da80bad2b35512d5c
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2020-11-23 12:17:14 -0500
Commit message:
Update: downloadPertSig now uses the `PSet Name` column, the same as downloadPSetPackage: PharmacoGx
Commit: eb8e088b2a86ece326dda64053529da97af29c02
Author: ChristopherEeles <christopher.eeles@outlook.com>
Date: 2020-11-23 12:14:36 -0500
Commit message:
Fix: Version bump for BiocPackage: scuttle
Commit: 1ede46df3c54441900af998664e2863588b85c4a
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2020-11-23 09:00:57 -0800
Commit message:
Proper support for Vectors in colData during aggregation.Package: KnowSeq
Commit: cadaa0a30fc32958b8741a7b54d0253507baaa55
Author: casedUgr <cased@ugr.es>
Date: 2020-11-23 18:06:12 +0100
Commit message:
Fixing bugsPackage: KEGGREST
Commit: a51655535b71c2cc3eae14c888fcbc02b71ff560
Author: Martin Morgan <Martin.Morgan@RoswellPark.org>
Date: 2020-11-23 12:04:39 -0500
Commit message:
version bumpPackage: KEGGREST
Commit: fd9970ea9df117d625257b8c6351cf85098cfbc1
Author: Martin Morgan <Martin.Morgan@RoswellPark.org>
Date: 2020-11-23 12:01:02 -0500
Commit message:
version bump, acknowledgement, updated Title / Description - Thanks Jeremy Vokening! closing #4Package: KEGGREST
Commit: bfd08a1d1d5fd86cabaf27403b947e2d4d5295a6
Author: Martin Morgan <Martin.Morgan@RoswellPark.org>
Date: 2020-11-23 12:00:10 -0500
Commit message:
minor tweaks - mention offending function, and don't capitalize start, in error message - avoid attaching httr in unit testsPackage: KEGGREST
Commit: d8d399c99bc74cd06621738e2e8bc9571c191fed
Author: jvolkening <jdv@base2bio.com>
Date: 2020-11-22 23:35:37 -0600
Commit message:
use POST to fetch color mapsPackage: SynExtend
Commit: 27d45d3cc420f0637017605001785d426cf220a0
Author: Cooley <npc19@Wrightlab-mnb-1.local>
Date: 2020-11-23 11:49:28 -0500
Commit message:
fixed incorrect iteratorPackage: multiHiCcompare
Commit: 5b1e6a576c64d3213caa91001ab4481d447f0bb1
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2020-11-23 11:14:18 -0500
Commit message:
Ignore pkgdownPackage: multiHiCcompare
Commit: 63833565e906f525d3af050603644cd0d6ce3547
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2020-11-23 11:14:00 -0500
Commit message:
Version 2.0.0 major update, see NEWSPackage: multiHiCcompare
Commit: bf9218bf42ee59d81649fde24eee7a5af33465cd
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2020-11-22 15:34:23 -0500
Commit message:
Make filtering global and remove alpha parameterPackage: multiHiCcompare
Commit: a2fdae9f4a8f490358c0c9bc04d8e0e7afcf1eac
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2020-11-22 15:26:02 -0500
Commit message:
Yaml adjustmentPackage: multiHiCcompare
Commit: 0b80b5b14e932265485ecaef4136b35c82ec9943
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2020-11-22 15:20:25 -0500
Commit message:
Merge branch 'master' of git.bioconductor.org:packages/multiHiCcomparePackage: multiHiCcompare
Commit: 41d4d5030f1d4d1c736830a6a9e47d1a8b4ce1f7
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2020-08-28 13:38:45 -0400
Commit message:
Add Lifecycle stable badgePackage: multiHiCcompare
Commit: 2699f6f0e59e8b92c7389d3b5d51850a9cfb6125
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2020-08-28 13:38:00 -0400
Commit message:
Add BioC badgePackage: VarCon
Commit: 99f44e040df67e6419309cc0ab70e8fc9c99d54c
Author: caggtaagtat <Johannes@web.de>
Date: 2020-11-23 17:11:35 +0100
Commit message:
removed quotes from filePackage: CNVgears
Commit: a31d32885a4b66077a9d454d110082b1a260fa9b
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-11-23 16:58:51 +0100
Commit message:
version bumpPackage: CNVgears
Commit: 72a4ccd7fdbf9dbb9041b3ca0920458e49ae75bb
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-11-23 16:58:29 +0100
Commit message:
several minor fixesPackage: VarCon
Commit: d1bcc605f9bd0b05d4562f536a147fded454b568
Author: caggtaagtat <Johannes@web.de>
Date: 2020-11-23 16:46:09 +0100
Commit message:
FALSE instead of FPackage: CNVgears
Commit: f89059a7c8c604adbb328ad91e26c52fb9b39ec6
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-11-23 16:35:45 +0100
Commit message:
version bumpPackage: CNVgears
Commit: 648395e9e26f4079a13ba6a80d995ad16694fb68
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-11-23 16:33:51 +0100
Commit message:
expanded man pages of the example dataPackage: CNVgears
Commit: b6a927b8f82fb9ede10d14fd2de55776ff4a0052
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-11-23 16:25:52 +0100
Commit message:
changed vingette file namePackage: CNVgears
Commit: 23a2f4b11209bbeb767b2f66455b53bb4aa07ca4
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-11-23 16:24:42 +0100
Commit message:
updated DESCRIPTIONPackage: CNVgears
Commit: 7b2821742f17748c2dc798659e0068e04fe7315f
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-11-23 11:51:07 +0100
Commit message:
updated vignettePackage: CNVgears
Commit: dbd91a4a81cf71610358e97d5bd274e63cfa4add
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-11-23 11:50:55 +0100
Commit message:
improved a warningPackage: CNVgears
Commit: 1737d593e05965267d3bed54f84818fca4c1573f
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-11-23 11:10:05 +0100
Commit message:
changed cat() to message()Package: CNVgears
Commit: d4636b85f898e48f8909cc3cfeecfd9fefe6ef51
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-11-20 16:12:56 +0100
Commit message:
updated vignettePackage: CNVgears
Commit: d6611593b59aaf3808b63391df4b57190146b008
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-10-28 10:54:28 +0100
Commit message:
updatePackage: CNVgears
Commit: 755dfc1a104b27992ebfcd10d3941877ce4dce6e
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-10-28 10:47:52 +0100
Commit message:
version bumpPackage: CNVgears
Commit: 1aa937496f8ef471f86f68f14a4e925bfa3e14d1
Author: Simone Montalbano <simone.montalbano@protonmail.com>
Date: 2020-10-22 15:20:13 +0200
Commit message:
cnmops conversion was not completePackage: VarCon
Commit: 0c4ddd44de216c14fb261e803422cf80aed46ec4
Author: caggtaagtat <Johannes@web.de>
Date: 2020-11-23 16:28:33 +0100
Commit message:
versionPackage: VarCon
Commit: e243544afb3184a549e7aac34ad5cad0849d3320
Author: caggtaagtat <Johannes@web.de>
Date: 2020-11-23 16:26:49 +0100
Commit message:
temp filePackage: CoGAPS
Commit: e448a5906fba3203ef6ec9b0f71796ac9549ae0b
Author: lothm2014 <lothm2014@yahoo.com>
Date: 2020-11-23 07:49:16 -0500
Commit message:
Fixed merge conflictPackage: CoGAPS
Commit: 898e0728fb732e7b91a82138a41384e2cff5f1f7
Author: lothm2014 <lothm2014@yahoo.com>
Date: 2020-11-23 07:43:57 -0500
Commit message:
Updated version on READMEPackage: CoGAPS
Commit: 04046b9dba14207fad3f7ea5c32e8e89e2f3522f
Author: lothm2014 <lothm2014@yahoo.com>
Date: 2020-11-23 07:42:06 -0500
Commit message:
Updated version on bh updatesPackage: CoGAPS
Commit: ffe8aca25ae33e7b2bdfeb4ae347ab1e5097587e
Author: ejfertig <ejfertig@jhmi.edu>
Date: 2020-10-29 15:07:11 -0400
Commit message:
upped version of descriptionPackage: CoGAPS
Commit: c7bfef9db6d4672c09c10d53462407f0d8309734
Author: ejfertig <ejfertig@jhmi.edu>
Date: 2020-10-29 15:01:56 -0400
Commit message:
added BH dependencyPackage: CoGAPS
Commit: f34ce7ea3adae95f608d6c5751ac80624da3774f
Author: ejfertig <ejfertig@jhmi.edu>
Date: 2020-10-29 14:53:48 -0400
Commit message:
remove manual inclusion of boostPackage: VarCon
Commit: 9142641093b862272097be0390012473b237c301
Author: caggtaagtat <Johannes@web.de>
Date: 2020-11-23 12:55:44 +0100
Commit message:
desPackage: VarCon
Commit: 1ef1651775e15c6904c20915c59890e20d538cfe
Author: caggtaagtat <Johannes@web.de>
Date: 2020-11-23 12:47:47 +0100
Commit message:
add example transcript tablePackage: VarCon
Commit: 5594dbc4a0ca13f1f9bf1b7ee668e43642bbd006
Author: caggtaagtat <Johannes@web.de>
Date: 2020-11-23 12:41:20 +0100
Commit message:
work on reviewers remarksPackage: AnVIL
Commit: 09bf387494153be29912acc91f1e7dbab9d63645
Author: Martin Morgan <Martin.Morgan@RoswellPark.org>
Date: 2020-11-23 05:54:05 -0500
Commit message:
version bump and documentation tweaksPackage: AnVIL
Commit: d31e5feab21f8a02fd0c634d628f7986b01f3498
Author: Sehyun Oh <shbrief@gmail.com>
Date: 2020-11-22 23:26:13 -0500
Commit message:
Include the submission status information for avworkflow_jobsPackage: AnVIL
Commit: 308c12ad8ee7fd6729e8eceab5937d4f47503f1a
Author: Martin Morgan <Martin.Morgan@RoswellPark.org>
Date: 2020-11-23 05:30:55 -0500
Commit message:
add avnotebooks_*()Package: DEScan2
Commit: fd11c2ac39cdec89bb14752f7f7bc1d4ef4a9b50
Author: Dario <dario.righelli@gmail.com>
Date: 2020-11-23 09:12:30 +0100
Commit message:
fixed filepath in countFinalRegionsPackage: MicrobiotaProcess
Commit: 6a538fc118192637aef75ce9f52c502dc8b75272
Author: xiangpin <xshuangbin@163.com>
Date: 2020-11-23 15:38:42 +0800
Commit message:
update news and bump versionPackage: MicrobiotaProcess
Commit: d37c0555fdfa3b9cc73d1dab801c82b4f2b577eb
Author: xiangpin <xshuangbin@163.com>
Date: 2020-11-23 15:38:14 +0800
Commit message:
add as.treedataPackage: ReactomeContentService4R
Commit: 9791277ea662d2092724027404c146f43fa0a746
Author: chilampoon <clpoon807@gmail.com>
Date: 2020-11-23 12:08:04 +0800
Commit message:
Correct license format & bump versionPackage: ReactomeContentService4R
Commit: 3ed7275d7c80aa1fa9f4f2843f440f232bb5a22c
Author: chilampoon <clpoon807@gmail.com>
Date: 2020-11-23 12:07:36 +0800
Commit message:
Add .onLoad()Package: proActiv
Commit: c5b35139b1feb27d0aaf6d1a337e2a46320c37d8
Author: Joseph Lee <joseph.lee@u.nus.edu>
Date: 2020-11-23 10:57:03 +0800
Commit message:
Merge remote-tracking branch 'upstream/master'Package: proActiv
Commit: dd632f4ccda9b535ecb7566afb2d4aaac1ebf1ba
Author: Joseph Lee <joseph.lee@u.nus.edu>
Date: 2020-11-23 10:54:21 +0800
Commit message:
update vignettePackage: proActiv
Commit: 07d9fe0ff809d10a9fb4f2c27c3cf8a018afd60d
Author: Joseph Lee <joseph.lee@u.nus.edu>
Date: 2020-11-23 10:53:47 +0800
Commit message:
updated READMEPackage: proActiv
Commit: 9e4b065e503f12dcf5d07882cd51845d854c21d6
Author: Joseph Lee <joseph.lee@u.nus.edu>
Date: 2020-11-23 10:53:16 +0800
Commit message:
update NEWSPackage: CellaRepertorium
Commit: ddcab247d898281bc59928bb483058ac9fa49c81
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2020-11-22 16:24:05 -0500
Commit message:
bumpPackage: CellaRepertorium
Commit: b23e97bd7d2248feb619499d941f8e38ac2adc24
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2020-11-22 16:23:14 -0500
Commit message:
more care for pairing in cells with no contigsPackage: CellaRepertorium
Commit: dd80804245472fdaa39d74fcf2b0b5e0a3891f64
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2020-11-05 17:32:06 -0500
Commit message:
Fixes #6Package: flowAI
Commit: c1f740b9ae80aca7f1cf509f84a0dec31ac99df6
Author: Gianni <mongianni1@gmail.com>
Date: 2020-11-22 22:10:43 +0100
Commit message:
add out of range checkPackage: SpectralTAD
Commit: 69032f749cab1669e1aa2e0d3e6835315024c01d
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2020-11-22 15:11:19 -0500
Commit message:
Version bump
</div> </div>
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