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GIT Logs

This is a list of recent commits to git.bioconductor.org, the master(development) branch of the Bioconductor GIT repository.

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Package: Pigengene
Commit: 6c89208bf1aa51e8c9cce9438f882327567f330b
Author: Habil Zare <zare@uthscsa.edu>
Date: 2022-12-01 10:21:17 -0600
Commit message:

 Habil: Version 1.23.4
 
Package: Pigengene
Commit: 1739d9313f6dab105f284bafefc3dc0f0b8f5f02
Author: Habil Zare <zare@uthscsa.edu>
Date: 2022-12-01 10:20:14 -0600
Commit message:

 Habil: Version 1.23.4
 
Package: AUCell
Commit: 6b2ee7c875b5f62f35d06ae3a0424efc1e3e56d4
Author: Sara Aibar <sara.aibar@kuleuven.be>
Date: 2022-12-01 16:41:36 +0100
Commit message:

 Add Matrix dependency
 
Package: MultiAssayExperiment
Commit: 1c143a2d09644bfb9ebd9ef9e0b9db4ea2ce0209
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2022-12-01 10:36:50 -0500
Commit message:

 version bump 1.25.3
 
Package: MultiAssayExperiment
Commit: ce228434ec0e39579342093e9541cdae71d588a0
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2022-12-01 10:36:46 -0500
Commit message:

 update news entries for earlier versions
 
Package: MultiAssayExperiment
Commit: 2e02c7bca153590c42a2069b2a8d6df6eb66d0c0
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2022-11-30 22:56:57 +0000
Commit message:

 version bump 1.25.2
 
Package: MultiAssayExperiment
Commit: cae049e654c0015e6799650414a15e0cfa24cf92
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2022-11-30 22:56:51 +0000
Commit message:

 update NEWS
 
Package: MultiAssayExperiment
Commit: 53ff70a813253918b3cff0f39d67f6f5338b0732
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2022-11-30 22:45:44 +0000
Commit message:

 include names with single bracket replacement
 
Package: MultiAssayExperiment
Commit: 5b7e8c78da21316b5a41047a69571360cafde630
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2022-11-29 19:58:35 +0000
Commit message:

 ignore build_site products and caches
 
Package: MultiAssayExperiment
Commit: 01438d4745e684d313aed71c74299be1bf9ebfb0
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2022-11-29 19:58:22 +0000
Commit message:

 use jammy to conincide with devel image
 
Package: RcisTarget
Commit: 33623d40f1ad4b4c21f510d570183328cf06eafe
Author: Sara Aibar <sara.aibar@kuleuven.be>
Date: 2022-12-01 16:36:14 +0100
Commit message:

 version bump
 
Package: RcisTarget
Commit: 8c0481bba5709de7a0654e74868cb9e5bba52ca9
Author: Sara Aibar <sara.aibar@kuleuven.be>
Date: 2022-12-01 16:30:00 +0100
Commit message:

 update examples
 
Package: PhyloProfile
Commit: 933ee2e1e0810cf7c4904a2bfe664020ca746e7e
Author: trvinh <trvinh@gmail.com>
Date: 2022-12-01 16:12:58 +0100
Commit message:

 option for uploading sorted taxon list
 
Package: hipathia
Commit: f4adf0010fb62fda06333a7f83d6861f6bd767bf
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-12-01 14:02:29 +0100
Commit message:

 roxygenize new version
 
Package: hipathia
Commit: 721f54d8e1d44d8fcfc591d2d160985bb9c85db7
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-11-29 17:20:29 +0100
Commit message:

 adding package guide v3.0
 
Package: ISAnalytics
Commit: 9af855b99600c50443ce080c5ca523a872571b89
Author: Giulia Pais <giuliapais1@gmail.com>
Date: 2022-12-01 13:41:17 +0100
Commit message:

 updated readme status badges
 
Package: ISAnalytics
Commit: a8f78779b2f48a10cc08da25837a6f8df3607c92
Author: Giulia Pais <giuliapais1@gmail.com>
Date: 2022-12-01 11:33:24 +0100
Commit message:

 [U] Update to 1.9.1
 
Package: ISAnalytics
Commit: 837e29e50a378920815c2079a71a7ef1d21b01fa
Author: Giulia Pais <giuliapais1@gmail.com>
Date: 2022-12-01 10:17:25 +0100
Commit message:

 [U] Added bonferroni correction in gene_frequency_fisher
 
Package: ISAnalytics
Commit: 9b7eb4ae9424bb082fb8273adabc14a94636729b
Author: Giulia Pais <giuliapais1@gmail.com>
Date: 2022-11-30 17:11:17 +0100
Commit message:

 [FIX] Fixed code for tidyselect warnings, minor adjustments
 
Package: ISAnalytics
Commit: cc2874a7eb8cada5f3219c05a4c6fbfc2abf4c89
Author: Giulia Pais <giuliapais1@gmail.com>
Date: 2022-11-02 17:52:36 +0100
Commit message:

 [minor] Removed github actions from branch, fixed codecov file and README
 
Package: biodbLipidmaps
Commit: f3417835bc651afcad14ee7ea58e34b6decc639c
Author: Pierrick Roger <pk.roger@icloud.com>
Date: 2022-12-01 13:24:56 +0100
Commit message:

 Remove HTML from web service's reply. (#15)

 
Package: biodbLipidmaps
Commit: 1895f9a0a812bd1ce9ad5f1c4f5f5bf4213689ad
Author: Pierrick Roger <pk.roger@icloud.com>
Date: 2022-11-30 19:36:32 +0100
Commit message:

 Solve chk library deprecations. (#14)

 
Package: biodbLipidmaps
Commit: ca0b96e575dfa9a6de9748562a2414cc3f3795ae
Author: Pierrick Roger <pk.roger@icloud.com>
Date: 2022-11-24 23:20:16 +0100
Commit message:

 Merge branch 'remove_R_front'
 
Package: biodbLipidmaps
Commit: 9ad08731fb6ef63fa3119fe0d3f6e21897032168
Author: Pierrick Roger <pk.roger@icloud.com>
Date: 2022-11-24 22:51:11 +0100
Commit message:

 Remove R_front script.
 
Package: edgeR
Commit: 7dc6dd1fc01166e49e93ca64f8e37aab4a6e51ee
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2022-12-01 22:10:20 +1100
Commit message:

 edgeR 3.41.2
- Update NAMESPACE for getNormLibSizes()
- Add getNormLibSizes() to calcNormFactors example.
 
Package: Rsubread
Commit: 743efc8da68ef2d4616b0e284c89fd7e7cdba02e
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2022-12-01 19:42:54 +1100
Commit message:

 Fixex warning in cellCounts
 
Package: IntOMICS
Commit: a4b0fad3eb2ed5e4c9b71d51991fac2b11ced26b
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-12-01 08:14:18 +0100
Commit message:

 BN_mod_res update
 
Package: IntOMICS
Commit: e089ba7f8b0ea43afc0bb382127c0c76983ec7c7
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-27 19:26:55 +0100
Commit message:

 vignette error
 
Package: IntOMICS
Commit: ed2a8728205f0e02666697dc8984f7554af88237
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-27 10:59:42 +0100
Commit message:

 omics_to_list add
 
Package: IntOMICS
Commit: f401fd1d4e5d8e027f6bb0c73ab8e667f43c7c4a
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-26 20:20:53 +0100
Commit message:

 validity vignette man [ackage
 
Package: IntOMICS
Commit: 18b08b8fa887e5344f92d1500f9d9bb28d0e33db
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-25 12:16:51 +0100
Commit message:

 edge_types simplified
 
Package: IntOMICS
Commit: cef900a95cab6bf072d90ea29a3004e0e39650d4
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-25 09:37:58 +0100
Commit message:

 importFrom_internal_BiocStyle_dataLoad_pckgLinks
 
Package: IntOMICS
Commit: 9b1954859f926bb5806b273f840cb34b0fd93c1b
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-21 22:31:18 +0100
Commit message:

 package:: removed
 
Package: IntOMICS
Commit: ae0bb14a9b41c4020244e301b398dfa28e075dc0
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-21 22:05:15 +0100
Commit message:

 version update
 
Package: IntOMICS
Commit: c90e08b23bd189a0baa35adbea3106d9bb4323db
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-21 22:00:07 +0100
Commit message:

 citation
 
Package: IntOMICS
Commit: dd30d8d8db33d0b581ddbdfb13b14af4cca7b743
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-21 21:53:10 +0100
Commit message:

 DESCRIPTION updated
 
Package: IntOMICS
Commit: 17a9cdaad0c0c539fa52179e8459c4ff6e5eeebf
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-21 21:40:16 +0100
Commit message:

 DESCRIPTION modified
 
Package: IntOMICS
Commit: a304be942b03ed222a5eac381e70c8067fddc418
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-21 21:32:58 +0100
Commit message:

 MatchedAssayExperiment
 
Package: IntOMICS
Commit: 5fafe618808731002cab70f180b137471726cdeb
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-20 23:34:46 +0100
Commit message:

 MatchedAssayExperiment hidden functions
 
Package: IntOMICS
Commit: af199913fa483849ec9160bfb96edcf78793fba3
Author: anna-pacinkova <ana.pacinkova@gmail.com>
Date: 2022-11-20 20:21:22 +0100
Commit message:

 readme added
 
Package: immunoClust
Commit: 4e6d709cc8a08242ec941152fe4d52b54404ebdb
Author: Till Sörensen <till-antoni.soerensen@charite.de>
Date: 2022-12-01 09:25:59 +0100
Commit message:

 problems with vignette build
 
Package: speckle
Commit: 58c04c6b39b26ca80c5baa325b69fd375b59bcee
Author: bphipson <12027703+bphipson@users.noreply.github.com>
Date: 2022-12-01 17:34:15 +1100
Commit message:

 try to fix edgeR error
 
Package: rfaRm
Commit: 83e2b1d1ca0677ef8eeec3be288c39b91d4c004d
Author: Lara Selles <lara.selles@oist.jp>
Date: 2022-12-01 15:26:30 +0900
Commit message:

 fix URL for clans
 
Package: speckle
Commit: 748128e8e501e0b29596657434798530d4a18366
Author: bphipson <12027703+bphipson@users.noreply.github.com>
Date: 2022-12-01 17:10:30 +1100
Commit message:

 bump version number
 
Package: speckle
Commit: b87a483d34e95c9b573d2c0e3553b02265bfe292
Author: bphipson <12027703+bphipson@users.noreply.github.com>
Date: 2022-12-01 17:07:55 +1100
Commit message:

 fix warning in bioconductor build (edgeR)
 
Package: spatialLIBD
Commit: 94388342546637dc6851f3f51dc3ac1d598038ab
Author: Leonardo Collado Torres <lcolladotor@gmail.com>
Date: 2022-11-30 23:36:50 -0500
Commit message:

 Fix some minor bugs while testing locally
 
Package: spatialLIBD
Commit: ce71aeeef148672ae347faa155d9030daaf4b017
Author: Leonardo Collado Torres <lcolladotor@gmail.com>
Date: 2022-11-30 22:49:47 -0500
Commit message:

 v1.11.2 -- tentative change
 
Package: spatialLIBD
Commit: 364ba0783b56314de93a5ada87b287e4ba6c6e59
Author: Leonardo Collado Torres <lcolladotor@gmail.com>
Date: 2022-11-30 22:48:17 -0500
Commit message:

 Try using fetch_data() for type = "spatialDLPFC_Visium"
 
Package: GenomeInfoDb
Commit: 06deb62aeff52a4f8042b379cfaf5861e4ab31fb
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2022-11-30 12:56:39 -0800
Commit message:

 Register some additional NCBI assemblies

- Assemblies bCatUst1.alt.v2 and bCatUst1.pri.v2 for Catharus ustulatus.
- Assemblies felCat9.1_X and F.catus_Fca126_mat1.0 for Felis catus.
 
Package: shinyMethyl
Commit: a315b087cc6b5c283fccec403deeaee808900742
Author: Jean-Philippe Fortin <fortin946@gmail.com>
Date: 2022-11-30 10:04:03 -0800
Commit message:

 Fixed testing
 
Package: BioPlex
Commit: 9b697729604320e89cfbadf5bbf569c51453eb15
Author: lgeistlinger <ludwig.geistlinger@gmail.com>
Date: 2022-11-30 12:07:35 -0500
Commit message:

 add pointers to data checks
 
Package: atena
Commit: 5700031248152d645c27684770de6a3dfbc402a0
Author: beacalvo <beacalvo96@gmail.com>
Date: 2022-11-30 17:13:59 +0100
Commit message:

 Fixed error in creating reassignment matrix in the atena method
 
Package: HiCDOC
Commit: 317e3015546d7457636ac5daf9d3a3ce9522876c
Author: Matthias Zytnicki <matthias.zytnicki@inra.fr>
Date: 2022-11-30 16:33:16 +0100
Commit message:

 Update news.
 
Package: HiCDOC
Commit: a2b05061c33909fb58d86dc1d65a40bdf1e3b31f
Author: Matthias Zytnicki <matthias.zytnicki@inra.fr>
Date: 2022-11-30 16:27:44 +0100
Commit message:

 Version bump.
 
Package: HiCDOC
Commit: bbbf8f3e7fdd1e7be2dd17fad8ae6372e6b1bc81
Author: Matthias Zytnicki <matthias.zytnicki@inra.fr>
Date: 2022-11-30 16:27:04 +0100
Commit message:

 Merge remote-tracking branch 'upstream/master'
 
Package: HiCDOC
Commit: 23d28c8c0c37c945179b4108b72915da9610acec
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-30 16:14:40 +0100
Commit message:

 remove unused files
 
Package: HiCDOC
Commit: e099e7a744f9d7e37e47c87cd5fc3b66c7bdfe27
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-30 16:12:20 +0100
Commit message:

 Merge pull request #5 from mzytnicki/selfInteractionRatio

Change the computation of selfInteraction (diagonal only) + review the distance normalisation 
Package: HiCDOC
Commit: 5349c3d06a3feb4a268830c6c3d5cd4a2bbc5f79
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-30 16:12:07 +0100
Commit message:

 Merge branch 'master' into selfInteractionRatio 
Package: HiCDOC
Commit: 93e2faf7ed75c6f06d93dac401391387cb96c7a2
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-30 15:47:23 +0100
Commit message:

 pass tests
 
Package: HiCDOC
Commit: 8e058dc948fbb287dba86ff973485721eee30415
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-29 14:37:01 +0100
Commit message:

 change tests values
 
Package: HiCDOC
Commit: eacd1b613c5adf2e8420476f89b9adaada0352bb
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-29 14:36:47 +0100
Commit message:

 recompile example data
 
Package: HiCDOC
Commit: e8117f2c584373cbd0ea5d2cff399dca50075102
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-29 14:36:30 +0100
Commit message:

 handles error on tests (pb of data.table agregation format, needs to be all numeric)
 
Package: HiCDOC
Commit: ffe5633b1110a8fb435d4b86cf798040305d1107
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-17 15:06:52 +0100
Commit message:

 add missing argument
 
Package: HiCDOC
Commit: 3e0463792aa6e56b5d314eddb02bc042ed41053d
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-17 14:01:55 +0100
Commit message:

 correct roxygen
 
Package: HiCDOC
Commit: fd1e2a2d51fc5137d48f8dcf33d39674dac0e218
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-17 14:01:15 +0100
Commit message:

 correct computation of selfInteractionRatios
 
Package: HiCDOC
Commit: 04e8f4732e5c615d472e99c6baaec85e4ee92ab4
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-17 13:59:37 +0100
Commit message:

 add missing arguments in function
 
Package: HiCDOC
Commit: 0a91356479288db0594e7320f61c253e37ca5f7d
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-16 16:38:36 +0100
Commit message:

 factorize the creation of the interactionSet in parsers, recreate the interacion on diagonal if there is only off diagonal interaction
 
Package: HiCDOC
Commit: b005fa2fe249beb808dbbadb2328378965f3da6e
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-11-16 15:21:18 +0100
Commit message:

 keep zero lines
 
Package: HiCDOC
Commit: 4f28b855d2ecd63ff5cf3088b00a95498b885393
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-26 16:57:59 +0200
Commit message:

 rechange compartments affectation, correct tests, recompile example data
 
Package: HiCDOC
Commit: fcb0eb0055ff9d2846facd21ad2e5baef57a1a1a
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-26 16:03:22 +0200
Commit message:

 remove varif if NA values on the median (not allowed), already fixed before KR normalization.
 
Package: HiCDOC
Commit: 9b4514aa3513edcf039ae6edae3016be3098c436
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-26 15:59:05 +0200
Commit message:

 allow results of only one condition
 
Package: HiCDOC
Commit: 60c470b7d3e14802d560263794abffdf6426d3b9
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-24 19:23:09 +0200
Commit message:

 revert compartment assignement. Lower should be A. correct tests. rerun example data
 
Package: HiCDOC
Commit: 8e9caadd89fb25e28be95b6166d77329e246bd3e
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-24 15:32:35 +0200
Commit message:

 change compartment assignment (higher = A). Recompile example data, change tests.
 
Package: HiCDOC
Commit: 0a48dd5b69e651be9c35ecf380c78ad19c232524
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-24 10:48:53 +0200
Commit message:

 use median of others values if no value on diagonal
 
Package: HiCDOC
Commit: fd5e86b68423a6f9b5ca6f69d2881df821348dc0
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-24 10:43:00 +0200
Commit message:

 correct tests according to changes on norm distance, ratios and new colors on plotInteractions
 
Package: HiCDOC
Commit: 17739faf8fab323fb30136d0a60235a66f1111ad
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-24 10:31:54 +0200
Commit message:

 coorect test after add of +1 in positions
 
Package: HiCDOC
Commit: 240822b9a06bc1971d9bae03ddf831caef4d03a5
Author: Matthias Zytnicki <matthias.zytnicki@inra.fr>
Date: 2022-10-20 14:58:30 +0200
Commit message:

 Version bump.
 
Package: HiCDOC
Commit: 6433d11169cd65e2c1fc73860f77850de8cf0945
Author: Matthias Zytnicki <matthias.zytnicki@inra.fr>
Date: 2022-10-20 14:58:04 +0200
Commit message:

 Correct Windows bug.
 
Package: HiCDOC
Commit: 2ea0091475e2cd0861432bee02c774ab36ca66d2
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-21 16:11:02 +0200
Commit message:

 allow a transformX parameter in plotDistanceEffect, 3 colours fo plotInteractions
 
Package: HiCDOC
Commit: c3081b35bd445075d0735a7a393b16079b22381b
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-21 15:55:39 +0200
Commit message:

 removing the +1 in log(+1) in normdistance (after KR = no need). returning results in log to have a nice viz scale (around 0)
 
Package: HiCDOC
Commit: bbc571ecede79425de83dd9ab598238d6da484f6
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-20 16:54:32 +0200
Commit message:

 normalization distance : put again results in original scale. Too hard to viz interactions and distance effect otherwise
 
Package: HiCDOC
Commit: 1a12582d13f8dc6dc6238f33a415b0666dbf65a6
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-20 14:09:06 +0200
Commit message:

 reverse compartments attribution (same as before, to compare results)
 
Package: HiCDOC
Commit: bdfe7468e13e2a5e05f73f0a9dc4b4a245dac2a4
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-20 13:29:45 +0200
Commit message:

 correct variance for variance by column (by replicate, condition)
 
Package: HiCDOC
Commit: 8dd96a16f3550858cb2419a6d1ce4eb97707ac0c
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-20 12:57:26 +0200
Commit message:

 valids assays must have a non zero variance
 
Package: HiCDOC
Commit: 91486e54a1fb6b710b67f2118fcd03d038c52d93
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-20 09:30:47 +0200
Commit message:

 rename compartment -> cluster when its cluster and not compartment
 
Package: HiCDOC
Commit: cc9cec3c0d7a8bb74e1c719638903ce353ed6436
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-20 09:30:20 +0200
Commit message:

 correct in case of only 1 column matrix
 
Package: HiCDOC
Commit: f179d22e2ecbdb5662612982b5d260e5d7e23e85
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-10-19 11:43:51 +0200
Commit message:

 log2 normalization for norm distance, keep in log2 after
 
Package: HiCDOC
Commit: 200eebe2cc6f228ad75a39a90810f535a546df61
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-09-14 17:27:08 +0200
Commit message:

 take only diagonal to detectcompartments, change A to higher values
 
Package: HiCDOC
Commit: cae8f06ec4dc6a45b1dd58c43dd3cfb96d0cafe4
Author: Elise Maigné <elise.maigne@inrae.fr>
Date: 2022-09-14 17:26:29 +0200
Commit message:

 use log to normalize distance (loess done on log). Dividing by resulting value (equivalent to remove bias in log scale)
 
Package: HiContactsData
Commit: ddd1dc77fab00ddcbbf3dc4882361bc160127cd3
Author: js2264 <jacquesserizay@gmail.com>
Date: 2022-11-30 16:25:57 +0100
Commit message:

 bump to 1.1.6
 
Package: HiContactsData
Commit: aced6d43f486b939a33ba57d91c2ae4ad0cefdab
Author: js2264 <jacquesserizay@gmail.com>
Date: 2022-11-30 16:21:05 +0100
Commit message:

 add hicpro validPairs
 
Package: MungeSumstats
Commit: 7de01e900fafa8bb7ca5a349b9ac0557764ebe26
Author: Al-Murphy <alanmurph94@hotmail.com>
Date: 2022-11-30 15:16:55 +0000
Commit message:

 GHA update
 
Package: MungeSumstats
Commit: 57f4aa199b55fa95242aadbaa0cd9eaa988320ee
Author: Al-Murphy <alanmurph94@hotmail.com>
Date: 2022-11-30 15:09:43 +0000
Commit message:

 GHA update
 
Package: MungeSumstats
Commit: b210a7063ec3096fb025d5594de7400b70aeb9e7
Author: Al-Murphy <alanmurph94@hotmail.com>
Date: 2022-11-30 15:05:43 +0000
Commit message:

 GHA update
 
Package: MungeSumstats
Commit: 4ad1e0b876b97d3dd761f87e654229c47d275690
Author: Al-Murphy <alanmurph94@hotmail.com>
Date: 2022-11-30 15:02:09 +0000
Commit message:

 GHA update
 
Package: GRaNIE
Commit: d5f25893561555d2640f2642c5d8a7139e10f2f8
Author: Christian Arnold <christian.arnold@embl.de>
Date: 2022-11-30 13:26:52 +0100
Commit message:

 Changed link to TFBS files
 
Package: MsExperiment
Commit: 43f9c023af83094e5b7a731a6f31d9ba5f629946
Author: Johannes Rainer <5506112+jorainer@users.noreply.github.com>
Date: 2022-11-30 12:14:38 +0100
Commit message:

 Merge pull request #31 from rformassspectrometry/jomain

refactor: use grr::matches do match data to samples 
Package: MsExperiment
Commit: 3fcdbb92c9f96e7c368f65c110b042152aefaba1
Author: jorainer <johannes.rainer@gmail.com>
Date: 2022-11-30 09:35:15 +0100
Commit message:

 refactor: adapt to Sebastian's comments
 
Package: MsExperiment
Commit: 03248fa7f44e50e0267b8db38b2b135b7ec13b87
Author: Johannes Rainer <5506112+jorainer@users.noreply.github.com>
Date: 2022-11-30 07:56:02 +0100
Commit message:

 Update NEWS.md

Co-authored-by: Sebastian Gibb <mail@sebastiangibb.de> 
Package: MsExperiment
Commit: 4a496fe633ffc4574b5012e60e2a55149c58b57f
Author: jorainer <johannes.rainer@gmail.com>
Date: 2022-11-28 16:19:00 +0100
Commit message:

 refactor: use S4Vectors::findMatches instead of grr::matches
 
Package: MsExperiment
Commit: 99fe8a4e949a111f8bf05177cf517c69e5b4691a
Author: jorainer <johannes.rainer@gmail.com>
Date: 2022-11-15 14:59:21 +0100
Commit message:

 refactor: use grr::matches do match data to samples

- Use the `grr::matches` function instead of an `lapply` to find all matches
  between elements and samples in `linkSampleData`. This increases performance,
  especially for larger data sets.
 
Package: MsExperiment
Commit: 2118964fef7b4e2e226da9e27b68d8da8313457b
Author: jorainer <johannes.rainer@gmail.com>
Date: 2022-11-15 14:06:34 +0100
Commit message:

 ci: use R devel and BioC 3.17
 
Package: MsExperiment
Commit: af327547b42345e1ec137c4df550b2f812161eb2
Author: jorainer <johannes.rainer@gmail.com>
Date: 2022-11-15 14:03:46 +0100
Commit message:

 Merge branch 'master'
 
Package: MsExperiment
Commit: 4fd4c32b97aed2c3fd5012b1a2633bc1010baf10
Author: jorainer <johannes.rainer@gmail.com>
Date: 2022-10-17 17:25:18 +0200
Commit message:

 refactor: import spectra<- from ProtGenerics
 
Package: LEA
Commit: aa7e9a9fe19dfb9c25311c1d7b80aa504a86ac2a
Author: francois <francois@timc-bcm-66p.home>
Date: 2022-11-30 08:34:34 +0100
Commit message:

 fix dgetrf fast_inverse
 
Package: spaSim
Commit: 140e2baab378c46511aea09889bb104c1dc60942
Author: fuerzhou <“653540853@qq.com”>
Date: 2022-11-30 10:41:58 +1100
Commit message:

 Updated installation instructions.
 
Package: spaSim
Commit: f49dd0e2352d555daae9b6a8ed74c47496498222
Author: fuerzhou <“653540853@qq.com”>
Date: 2022-11-29 23:41:51 +1100
Commit message:

 Version bump in devel branch
 
Package: spaSim
Commit: e4f218220239bb23b0b359098ec130fcd792ee4a
Author: fuerzhou <“653540853@qq.com”>
Date: 2022-11-29 22:47:35 +1100
Commit message:

 Added RANN import
 
Package: spaSim
Commit: 382c64fc82cfed8d4aa0987d18a4e3c49f017dde
Author: fuerzhou <“653540853@qq.com”>
Date: 2022-11-29 22:31:44 +1100
Commit message:

 Added `jitter` parameter to `TIS()`.
 
Package: spaSim
Commit: 8f22f8840a74008a1e2ed5f5cc20be0f71fe9f72
Author: fuerzhou <“653540853@qq.com”>
Date: 2022-11-29 22:04:47 +1100
Commit message:

 Fixed "jitter" typo in documentation.
 
Package: spaSim
Commit: e6b6f1eaf800838cebe7b96c201c572c5155c23b
Author: fuerzhou <“653540853@qq.com”>
Date: 2022-11-29 22:04:21 +1100
Commit message:

 Fixed the incorrectly plotted image in README
 
Package: speckle
Commit: 65866a812ce2df505605aaebc7030bc00ed6c27f
Author: bphipson <12027703+bphipson@users.noreply.github.com>
Date: 2022-11-30 16:02:28 +1100
Commit message:

 Added changes to address issues for Bioconductor review
 
Package: speckle
Commit: 786bfe56d394c4e92f3a52d377f4cc0b69971fbc
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:40:36 +0800
Commit message:

 update unit test
 
Package: speckle
Commit: 1776c698e89284d90592d1d41e28509c297ad63d
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:28:40 +0800
Commit message:

 Update convertData.R 
Package: speckle
Commit: 456ed23d1edf4c695874fecabed4fd1f6d1e7de0
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:21:34 +0800
Commit message:

 change 1:3 construction to seq() 
Package: speckle
Commit: fb97ecd0d45247a9793e01ce0930e703f39d0d57
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:17:28 +0800
Commit message:

 Update propeller.anova.R 
Package: speckle
Commit: 25d62eeb7d9a56fcfa68e50bf651ce5a44700651
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:17:02 +0800
Commit message:

 Update propeller.ttest.R 
Package: speckle
Commit: de14b24fc5fd5afa09a0dc85d1141203c8b912a3
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:16:43 +0800
Commit message:

 Update normCounts.R 
Package: speckle
Commit: 8254e837ab44a528590a7c7e08296cb811346a59
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:16:30 +0800
Commit message:

 Update normCounts.R 
Package: speckle
Commit: 6ef3f96a908ff51ad443cf2f24cc9c34a0493fe3
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:15:45 +0800
Commit message:

 Update convertData.R 
Package: speckle
Commit: 35a6d33fcd8354e322dca1aa0612fc68f9462548
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:15:15 +0800
Commit message:

 Update speckle_example_data.R 
Package: speckle
Commit: b1352370aeed1b4641337c7e4424e6e73620909e
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:14:54 +0800
Commit message:

 Update propeller.anova.R 
Package: speckle
Commit: 3a5713bb93c14399336da68a3ca243b105d6e6f1
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:14:29 +0800
Commit message:

 Update propeller.ttest.R 
Package: speckle
Commit: 7ea6284d2f6c1957e61122fe00d669486bb23789
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:13:39 +0800
Commit message:

 Update propeller.anova.R 
Package: speckle
Commit: de89ebdee4024589bbd5af04cb4f151603ede9f8
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:13:17 +0800
Commit message:

 Update propeller.R 
Package: speckle
Commit: 89b8160fde0cfd4db1bbfa1dc94ed8b00855a7a1
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:11:59 +0800
Commit message:

 Update normCounts.R 
Package: speckle
Commit: 5eb18f6c2cc6a5216f86a9fbbf36c301068922b4
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:11:28 +0800
Commit message:

 Update ggplotColors.R 
Package: speckle
Commit: 1dfe2bdfd0c83a7f9687813918882810725aef5b
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:11:09 +0800
Commit message:

 Update getTransformedProps.R 
Package: speckle
Commit: 1a0c164ab8b23aafb692cc3dfe25cbeb27a53508
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:10:39 +0800
Commit message:

 Update estimateBetaParamsFromCounts.R 
Package: speckle
Commit: cacaddf66d27a42deaa15641e9458f4fa6b7854b
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:10:22 +0800
Commit message:

 Update estimateBetaParam.R 
Package: speckle
Commit: 383af35e2ee5b12c98ca97340a203b7f8a2ad257
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-14 11:10:01 +0800
Commit message:

 Update convertData.R 
Package: speckle
Commit: 1cdc07f4b594114134185e88c8cff3520eebbcd6
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-11 15:02:28 +0800
Commit message:

 include packages for unit test
 
Package: speckle
Commit: 3dc19d0a8086785acb35cceab84ecbbebf9607e2
Author: MelodyJIN-Y <Melody-Jin@outlook.com>
Date: 2022-11-11 15:01:44 +0800
Commit message:

 add unit tests
 
Package: speckle
Commit: f15ac11d95ad0bb721834a9616e0c69cc61ee221
Author: bphipson <12027703+bphipson@users.noreply.github.com>
Date: 2022-11-10 15:31:19 +1100
Commit message:

 Update DESCRIPTION

Add LazyData: TRUE 
Package: speckle
Commit: 1e3fa54dd5acc8a6a527e5ac8f6460bbe4bd65bc
Author: bphipson <12027703+bphipson@users.noreply.github.com>
Date: 2022-10-14 16:56:57 +1100
Commit message:

 Update README.md 
Package: speckle
Commit: 73afb9ff887a0e4364dae4160305c8507adffeb3
Author: bphipson <12027703+bphipson@users.noreply.github.com>
Date: 2022-10-14 16:54:41 +1100
Commit message:

 Update README.md 
Package: spatialLIBD
Commit: e16f4e0fa134e224cafd593853931149391e0a56
Author: Leonardo Collado Torres <lcolladotor@gmail.com>
Date: 2022-11-29 20:20:46 -0500
Commit message:

 v1.11.1 -- minor change in gene_set_enrichment() that provides more info
 
Package: spatialLIBD
Commit: cefc7db61a16e80b16c14f0df30b40701cfc788c
Author: Leonardo Collado Torres <lcolladotor@gmail.com>
Date: 2022-11-29 20:20:10 -0500
Commit message:

 Compute NumSig and SetSize like at https://github.com/LieberInstitute/HumanPilot/blob/master/Analysis/Layer_Guesses/check_clinical_gene_sets.R since it's useful info to have
 
Package: MAST
Commit: 339c6a71e727af549e8b802b4ea64e6259c592d5
Author: Andrew McDavid <andrew@ozette.com>
Date: 2022-11-29 16:59:28 -0800
Commit message:

 correct a few class == tests
 
Package: MAST
Commit: 16e90b42f071e0019d59db92ab58f41c5a9f7ab8
Author: Andrew McDavid <andrew@ozette.com>
Date: 2022-11-29 16:59:10 -0800
Commit message:

 Hack to resolve #175 and satijalab/seurat#6489
 
Package: openCyto
Commit: 3f60af92ad380aea9ff7cc0bf077c4f3a0321fc4
Author: mikejiang <mike@ozette.ai>
Date: 2022-11-29 16:33:29 -0800
Commit message:

 bump
 
Package: openCyto
Commit: a2949ed922e1e5529ac24f29b04af824b6eecaa6
Author: mikejiang <mike@ozette.ai>
Date: 2022-11-29 16:33:02 -0800
Commit message:

 dis able boost thread
 
Package: MAST
Commit: ac2f42e43c1067bccc06c3af93b9194ecab7cb9f
Author: Andrew McDavid <andrew@ozette.com>
Date: 2022-11-29 15:34:01 -0800
Commit message:

 Merge remote-tracking branch 'upstream/master'
 
Package: MAST
Commit: 8256845b3122274b691d7b3a410c1ad3ff9acf75
Author: Andrew McDavid <andrew@ozette.com>
Date: 2022-11-29 15:32:42 -0800
Commit message:

 attempt to fix stat_ell
 
Package: MAST
Commit: 60da6da0d76c6e8b2deaaaa4dec395fa2d45aac0
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2022-02-02 14:48:33 -0500
Commit message:

 Rerun pkgdown
 
Package: MAST
Commit: 6ff665c1f9638113461e7b1685c23dd45bd3ee9f
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2021-12-17 10:41:45 -0500
Commit message:

 Honeypot template
 
Package: MAST
Commit: 1f8d7c349fca820c5530aa7a18f9e47f0a620eb2
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2021-12-17 10:37:43 -0500
Commit message:

 Try adding an issue template to cut down on support questions to the issues
 
Package: MAST
Commit: 1daced13bd8b9f4332cdee905aee0ef4c8b26f40
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2021-12-17 10:36:32 -0500
Commit message:

 Didn't run document() to update melt_list_left example.
 
Package: MAST
Commit: 2b0cdf132a6a8162ac63cd4dd3cae2f21393057c
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2021-12-15 12:47:35 -0500
Commit message:

 Fixes #157

Also quell warnings about nobs.default
optimMsg was not being properly unlisted.
 
Package: MAST
Commit: 6f5d763983d8087447d9ab8f6d47745ec4fcf810
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2021-12-15 11:42:38 -0500
Commit message:

 Add `parallel` argument to `summary` and `lrTest`.
Fixes #169
 
Package: MAST
Commit: 97d14e9f9cb43d306109e8d7202b30314f04d018
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-10-26 16:30:38 +0000
Commit message:

 bump x.y.z version to odd y following creation of RELEASE_3_14 branch
 
Package: MAST
Commit: e7a03aaac4258830459424efd295faad35fc6e28
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-10-26 16:30:38 +0000
Commit message:

 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch
 
Package: MAST
Commit: e3f45ab004e18a14f6400cc69388df04e5a482fe
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-05-19 16:23:40 +0000
Commit message:

 bump x.y.z version to odd y following creation of RELEASE_3_13 branch
 
Package: MAST
Commit: f9da1b9b0812a630f42440e7acd38996d5d745a6
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-05-19 16:23:40 +0000
Commit message:

 bump x.y.z version to even y prior to creation of RELEASE_3_13 branch
 
Package: MAST
Commit: f8fd6abb4746a5645f53627f224ab2bcb8bc900b
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2021-05-11 14:24:42 -0400
Commit message:

 Add a exprs_values slot to the ZlmFit class.

Needed to maintain state in lrTest and bootstrapping.
 
Package: MAST
Commit: 02c8b60c960531e6990ff32af8aa6435923ea278
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2021-05-10 13:26:44 -0400
Commit message:

 ebayes also needs to follow exprs_values
 
Package: MAST
Commit: ea948ebe13cb22a21ff0931d535276583becdb8f
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2021-05-07 08:56:10 -0400
Commit message:

 Add test RE: #158

unrelated: quell a couple warnings from lmer
 
Package: MAST
Commit: 9e88a7dd03918fa9820e8a8d080c85c6bfb83fae
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2021-05-07 08:55:26 -0400
Commit message:

 Fixes #158
 
Package: MAST
Commit: 48999d3b16f0c9655e6fe0179c0de387568ff5aa
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2021-02-16 15:37:36 -0500
Commit message:

 Fix link to MAST tag on support.bioconductor.org 
Package: MAST
Commit: 65e6bf9a30f2c7b87893769a50183b103bf15dfd
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2021-02-09 23:31:56 -0500
Commit message:

 Fix typo in vignette name. closes #150 
Package: HiContactsData
Commit: aebca197cb1aac51342e59c35ec5df3a59569d5f
Author: js2264 <jacquesserizay@gmail.com>
Date: 2022-11-30 00:08:14 +0100
Commit message:

 bump to 1.1.5
 
Package: HiContactsData
Commit: bff879f7cc9435ce5e6b7e813f6f7316112462fc
Author: js2264 <jacquesserizay@gmail.com>
Date: 2022-11-30 00:08:02 +0100
Commit message:

 add .hic and .hicpro files
 
Package: qvalue
Commit: f00c9060d92b1fe51471f329a5955e08a538379c
Author: Andrew Bass <andrewbass@Andrews-Mini.attlocal.net>
Date: 2022-11-29 16:44:31 -0500
Commit message:

 bump version number
 
Package: MungeSumstats
Commit: 42857d1781f6e849e45e566a6acc1ff3b135be8d
Author: Al-Murphy <alanmurph94@hotmail.com>
Date: 2022-11-29 20:52:53 +0000
Commit message:

 bug fix - chain file with offline run
 
Package: SFEData
Commit: 69bea0d473119a570cb37c376b05cb492b5579de
Author: Lambda Moses <dlu2@caltech.edu>
Date: 2022-11-29 12:26:49 -0800
Commit message:

 version bump before push
 
Package: SFEData
Commit: a03f41253150605fe35a058fe9bcf82665c43cc0
Author: Kayla Jackson <kaylajac@caltech.edu>
Date: 2022-11-28 16:29:02 -0800
Commit message:

 Add code for processing Lohoff, et al seqFISH data
 
Package: SFEData
Commit: 2fbfa94e2678d18c667c56e418e06a5a27154124
Author: Kayla Jackson <kaylajac@caltech.edu>
Date: 2022-11-28 15:30:28 -0800
Commit message:

 Change box file link for embryo 3
 
Package: SFEData
Commit: 69f223eb2d9fe40da4fa2d66b924506a2b0eeb13
Author: Kayla Jackson <kaylajac@caltech.edu>
Date: 2022-11-28 15:24:36 -0800
Commit message:

 Add mouse gastrulation seqFISH data
 
Package: SFEData
Commit: 2f3dce2c3e52c8a1c89909abf0aae5110fe0c253
Author: Kayla Jackson <kaylajac@caltech.edu>
Date: 2022-11-28 15:24:13 -0800
Commit message:

 Add mouse gastrulation seqFISH data
 
Package: SFEData
Commit: 37a3304625b55c94bb974ff83baa02808fd18ae3
Author: Kayla Jackson <kaylajac@caltech.edu>
Date: 2022-11-28 15:15:49 -0800
Commit message:

 Addition of seqFISH mouse gastrulation data
 
Package: SFEData
Commit: e0cc157f007528b4bf6773f4b07b793fb02db134
Author: Lambda Moses <dlu2@caltech.edu>
Date: 2022-11-03 10:31:04 -0700
Commit message:

 fixed Rd error
 
Package: GRaNIE
Commit: 8aa162c11e27508cc5fe5ad78ab2539fd3a75de1
Author: Christian Arnold <christian.arnold@embl.de>
Date: 2022-11-29 19:19:24 +0100
Commit message:

 README update
 
Package: GRaNIE
Commit: bd9b9e62596e740b5f1e01f6cf6461751c2a4abb
Author: Christian Arnold <christian.arnold@embl.de>
Date: 2022-11-29 19:01:52 +0100
Commit message:

 minor
 
Package: GRaNIE
Commit: 4656f59aaff1c2d069a5ea5ad78c96cbbf1fddbb
Author: Christian Arnold <christian.arnold@embl.de>
Date: 2022-11-29 18:53:49 +0100
Commit message:

 Documentation updates
 
Package: hpar
Commit: 26cc9533ec8ca1ca2a59ab1b105a77ee9f842ca9
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-29 15:52:04 +0100
Commit message:

 alias hpar
 
Package: hpar
Commit: 6c09034cb8fde6518ddaa3f9a5559f371eb7e171
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-29 15:49:27 +0100
Commit message:

 update hpar package man page
 
Package: hpar
Commit: b8559bf4181d782c62548eae5720b2f2a6d86ff3
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-22 17:12:59 +0100
Commit message:

 remove .rda from vignette and code/examples
 
Package: hpar
Commit: 7b7522e33d7b16a2410e9dac171883de25616dd2
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-22 16:59:39 +0100
Commit message:

 udpate metadata (remove .rda extension)
 
Package: hpar
Commit: dd4d6c3d1eedf9b936057dbce1ea7a0c0dcf1a5e
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-22 16:52:35 +0100
Commit message:

 add allHparData() to example
 
Package: hpar
Commit: 2d2d31a3af5a042245c18953c1ba03804bad46fd
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-22 16:42:39 +0100
Commit message:

 udpate code base to use EH
 
Package: hpar
Commit: 243ed50e342b27f318a66b3c032d9c02d0fb22b4
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-22 11:50:18 +0100
Commit message:

 fix sentence
 
Package: hpar
Commit: 33a2b7db83fdfff57e7770046ea4bc770a5eb07e
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-22 11:43:24 +0100
Commit message:

 use roxygen
 
Package: hpar
Commit: 5ffc1b54418c51fa0ff645f0456c2785148b6633
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-22 10:34:28 +0100
Commit message:

 update metadata.csv
 
Package: hpar
Commit: 0a94e5f23b62aff1cec9438f65fd4ad4932aec86
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-22 10:19:54 +0100
Commit message:

 update title names (omit extension)
 
Package: hpar
Commit: f54a653f5e503aadece1d1d8256870d5aea17e22
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-14 18:02:26 +0100
Commit message:

 fix: separate tags with colon instead of comma
 
Package: hpar
Commit: 528b39c68869d31d754086348d3f87d55df992fc
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-08 17:25:09 +0100
Commit message:

 feat: update package to use ExperimentHub
 
Package: hpar
Commit: 57e86b0e6d5bb2663f19c2fc84fec5576a54ccf9
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-08 14:17:17 +0100
Commit message:

 Merge branch 'devel'
 
Package: hpar
Commit: 538eb621cff671a98a3946888308ecb8fe654e70
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-11-08 14:16:58 +0100
Commit message:

 fix conflict
 
Package: hpar
Commit: ff5e3a35de6709211d172bd262697bb9010f19ec
Author: lgatto <laurent.gatto@gmail.com>
Date: 2022-10-31 22:21:18 +0100
Commit message:

 fix gha deploy 2
 
Package: hpar
Commit: 5db994099ba6936318563712300a2ddf0ae65f2b
Author: lgatto <laurent.gatto@gmail.com>
Date: 2022-10-31 22:03:33 +0100
Commit message:

 fix gha deploy
 
Package: hpar
Commit: 6ba932609b39cba313e9577c4f4b51c65cc08c26
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-10-31 18:18:49 +0100
Commit message:

 bump version
 
Package: hpar
Commit: f33800073442876d8bbb35df7e5e147a7846db22
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-10-31 18:17:43 +0100
Commit message:

 Merge branch 'ManonMartin-master'
 
Package: hpar
Commit: 489b1ad5d4fdd3206e2f955bf014f0014cecb78d
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-10-31 18:17:19 +0100
Commit message:

 fix errors
 
Package: hpar
Commit: 41877687a8f4043de616f3e4b279836afaaa8869
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2022-10-31 11:36:58 +0100
Commit message:

 fix: rename object in rnaGeneTissue21.0.rda
 
Package: hpar
Commit: 5a202c9c7f1ee708716391cfe50020e5d8642822
Author: Manon Martin <manmartin@mac-1T0-170.local>
Date: 2022-10-17 16:44:58 +0200
Commit message:

 updated to hpa 21.1
 
Package: hpar
Commit: b82d116986dca2194f6e8cfe609d10cca6a7d310
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2022-02-01 10:19:27 +0100
Commit message:

 Update check-bioc.yml 
Package: BiocFHIR
Commit: 10f9d06c5641a1d39e652944e8967c71bf78306c
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2022-11-29 09:48:55 -0500
Commit message:

 fix tests
 
Package: MsQuality
Commit: c1556102bdfa43701feb209d7ac7b1b1f6b95b7d
Author: tnaake <thomasnaake@gmx.de>
Date: 2022-11-29 14:42:47 +0100
Commit message:

 bump to 0.99.6
 
Package: MsQuality
Commit: 65e04a450321aea950db89a528e3a6e0a9a6d03f
Author: tnaake <thomasnaake@gmx.de>
Date: 2022-11-29 14:41:56 +0100
Commit message:

 Update check-bioc.yml
 
Package: MsQuality
Commit: 5eb9a07333dc27a14388efad22755db95f013a54
Author: tnaake <thomasnaake@gmx.de>
Date: 2022-11-29 13:32:34 +0100
Commit message:

 Update check-bioc.yml
 
Package: MsQuality
Commit: 61b60faacb74cfa64669e577de1b050947110047
Author: tnaake <thomasnaake@gmx.de>
Date: 2022-11-29 12:08:23 +0100
Commit message:

 Update check-bioc.yml
 
Package: MsQuality
Commit: 0552b84eedde4a4e790df8b224483374153475db
Author: tnaake <thomasnaake@gmx.de>
Date: 2022-11-29 10:22:10 +0100
Commit message:

 add partial_bundle in plotMetric
 
Package: MsQuality
Commit: 12f857b0ccbc07d426ac7b3ea36a41bb055242bb
Author: tnaake <thomasnaake@gmx.de>
Date: 2022-11-29 10:21:45 +0100
Commit message:

 create a script in inst/scripts/ for Lee2019-data
 
Package: MsQuality
Commit: c639a961d668a0993760be2ddc677d937587575a
Author: tnaake <thomasnaake@gmx.de>
Date: 2022-11-29 10:21:06 +0100
Commit message:

 use NEWS.md in markdown format
 
Package: MsQuality
Commit: b923959fcdf0a6baf2c39068b1c959fe1ceda868
Author: tnaake <thomasnaake@gmx.de>
Date: 2022-11-28 16:57:59 +0100
Commit message:

 add .github to .Rbuildignore
 
Package: MsQuality
Commit: e1f52ddc8a7e1305baf374a6fb0d060351921874
Author: tnaake <thomasnaake@gmx.de>
Date: 2022-11-23 12:59:42 +0100
Commit message:

 Update check-bioc.yml
 
Package: MsQuality
Commit: d47f08ac03b151df248b59f6f75b3307e5d40987
Author: tnaake <thomasnaake@gmx.de>
Date: 2022-11-23 12:48:51 +0100
Commit message:

 Update check-bioc.yml
 
Package: MsQuality
Commit: bc88593cc52f56b10026396fea6b810968464c4d
Author: tnaake <thomasnaake@gmx.de>
Date: 2022-11-23 12:46:44 +0100
Commit message:

 Update check-bioc.yml
 
Package: PhyloProfile
Commit: 48ea89e06cc6fd816d9145fd2178b04f79a3aca7
Author: trvinh <trvinh@gmail.com>
Date: 2022-11-29 14:42:25 +0100
Commit message:

 added interpro url; number of coorthologs and present taxa
 
Package: GRaNIE
Commit: 0ccc8610141fece1d3bd6279dbe01fad896fa301
Author: Christian Arnold <christian.arnold@embl.de>
Date: 2022-11-29 13:34:27 +0100
Commit message:

 Version bump devel
 
Package: GRaNIE
Commit: 83d6d42a3896910e35e617e4e853d95ca1fe759f
Author: Christian Arnold <christian.arnold@embl.de>
Date: 2022-11-29 13:33:46 +0100
Commit message:

 Bugfixes
 
Package: limma
Commit: 8b6c60082876e046640a04778e2a40e7e756eee3
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2022-11-29 22:30:00 +1100
Commit message:

 29 Nov 2022: limma 3.55.1

- eBayes() now checks whether `fit` is a list object before
  undertaking other tests.

- Update limma-Tests.Rout.save for Bioc 3.16 annotation packages.
 
Package: hipathia
Commit: 95823e8f33525bff1db4eb63c2786327b65ccfc4
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-11-28 16:37:13 +0100
Commit message:

 fixing bugs for version 3.0 and bumping to version 2.99.0
 
Package: hipathia
Commit: e7c7b77d9d3e85764b6d7ece9ea432e5791efca1
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-11-22 14:40:06 +0100
Commit message:

 bumping version to 2.15.1
 
Package: hipathia
Commit: a3456c2a6a9e257572c3957f35748a08c35b9a7f
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-11-22 14:36:14 +0100
Commit message:

 Merge branch 'master' into devel
 
Package: hipathia
Commit: ba8f7c5154aa646ecc5fa7e3759170addd7cef26
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-11-22 14:28:58 +0100
Commit message:

 comentando el código nuevo
 
Package: hipathia
Commit: 1509b42131dcdd1e1d2390a7cb3acf19491fe9cb
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-11-04 13:12:21 +0100
Commit message:

 finishing new functions and fixing colors
 
Package: hipathia
Commit: 79d590932bae956b283515b2d91d77795f9f688f
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-11-03 11:11:39 +0100
Commit message:

 fixing correct Y coordinate in pathway layout in plotVG
 
Package: hipathia
Commit: 5b407ad1f51edc3011a3acbdfd2520d3eed9fc3e
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-11-03 11:09:54 +0100
Commit message:

 ultimando función visualización pathways, y añadiendo nueva de creación de reports (wrap)
 
Package: hipathia
Commit: c175f9f04374756c0cb8d48c44ba5afba85454ba
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-10-28 14:09:16 +0200
Commit message:

 updating devel.R
 
Package: hipathia
Commit: e37530270b6d982a584195052fd529a56e4774c3
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-10-26 17:02:12 +0200
Commit message:

 separating plotVG function into nodes, edges and plot
 
Package: hipathia
Commit: c3126a81f14907450229b79c270c42cfecb2a7d0
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-10-18 16:26:49 +0200
Commit message:

 fixing bugs, adding DAsummary pathways_summary functions
 
Package: hipathia
Commit: 55ac48e21d7a9c158eeae6223bc58686312dadbc
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-10-17 16:37:40 +0200
Commit message:

 changing hipathia structure to make uniprot and GO terms be computed inside main hipathia function and creating DApathways function, to compute all comparisons of all datasets in a single function (wrap to do_wilcoxon and do_limma)
 
Package: hipathia
Commit: da64a0fc9584a722fbe6f392588a726970ed482f
Author: Marta R. Hidalgo <marta.hidalgo@outlook.es>
Date: 2022-10-17 11:27:38 +0200
Commit message:

 adding devel.R file
 
Package: Rsubread
Commit: 6e5eafac965138e7efce7f12296780d160823a4e
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2022-11-29 20:34:10 +1100
Commit message:

 fixed a bug of insufficient buffer
 
Package: immunoClust
Commit: 9c49a4e9036c8571a3530ad0ac66e92b942a89bc
Author: Till Sörensen <till-antoni.soerensen@charite.de>
Date: 2022-11-29 09:46:02 +0100
Commit message:

 meta.export
 
Package: immunoClust
Commit: ae98edfac8e65eff7d2e52a5c48d567cb61b920e
Author: Till Sörensen <till-antoni.soerensen@charite.de>
Date: 2022-11-29 09:45:14 +0100
Commit message:

 meta.export
 
Package: Rcwl
Commit: 72b36777871f639cea36580d498ce6b6795664e1
Author: Qian Liu <qliu7@buffalo.edu>
Date: 2022-11-28 22:57:52 -0500
Commit message:

 add add_meta() function
 
Package: Rsubread
Commit: 60aa1b1d3052fd861e880131b8bc3e5738928d18
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2022-11-29 14:32:38 +1100
Commit message:

 Merge branch 'master' of git.bioconductor.org:packages/Rsubread
 
Package: Rsubread
Commit: 658156db3918573603a23ecc19780e1a32a91a1d
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2022-11-29 14:31:52 +1100
Commit message:

 Use sparse martix for excluded cells.
 
Package: tomoseqr
Commit: 5eaee3607acff793005716f3547720f12b76502f
Author: shingenmochi <kinakomochi.work@gmail.com>
Date: 2022-11-29 11:53:30 +0900
Commit message:

 update NEWS
 
Package: tomoseqr
Commit: d93588af1f35e57dd5f0024c60146deb04af9ffc
Author: shingenmochi <kinakomochi.work@gmail.com>
Date: 2022-11-29 11:49:58 +0900
Commit message:

 bump version number
 
Package: tomoseqr
Commit: a4ab46730db1be0d0116a3bde8e82346b1400182
Author: shingenmochi <kinakomochi.work@gmail.com>
Date: 2022-11-29 11:42:07 +0900
Commit message:

 Merge branch 'update_Junker2014' into develop
 
Package: tomoseqr
Commit: 030bce9f55ef179b9f2244d92e01a1d41c01eb2d
Author: shingenmochi <kinakomochi.work@gmail.com>
Date: 2022-11-29 11:28:51 +0900
Commit message:

 update URL
 
Package: sesameData
Commit: c9051cfa7c6ddf20b04b877642905c9be17e3e37
Author: Wanding Zhou <zhouwanding@gmail.com>
Date: 2022-11-28 21:49:24 -0500
Commit message:

 bump to 1.17.3
 
Package: tomoseqr
Commit: bae988ed0172e5a98b16ec225ae45b1112a05d01
Author: shingenmochi <kinakomochi.work@gmail.com>
Date: 2022-11-29 11:35:45 +0900
Commit message:

 bump version number
 
Package: tomoseqr
Commit: cd07927aeae9707b6a7a4726acbf8c3ffd2cd1b0
Author: shingenmochi <kinakomochi.work@gmail.com>
Date: 2022-11-29 11:33:11 +0900
Commit message:

 Update RoxygenNote
 
Package: ensemblVEP
Commit: af762fac2254b11973335b479e3930446d257821
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2022-11-28 21:19:59 -0500
Commit message:

 passing check, using current 'vep' utility instead of a .pl program to use the API
the README mention of Windows may need attention
 
Package: sesame
Commit: bd470c0d5d8070d5a0c470ce2503121967f4b91a
Author: Wanding Zhou <zhouwanding@gmail.com>
Date: 2022-11-28 21:15:20 -0500
Commit message:

 1.17.2
 
Package: sesame
Commit: d3c4dc708b94aa41cf22384ee5fb44e1909461a9
Author: Wanding Zhou <zhouwanding@gmail.com>
Date: 2022-11-28 18:29:56 -0500
Commit message:

 bump to 1.17.1
 
Package: sesame
Commit: 486980210279af468fb5b0e7c3859752cfc1eb72
Author: Wanding Zhou <zhouwanding@gmail.com>
Date: 2022-11-10 21:30:05 -0500
Commit message:

 Merge remote-tracking branch 'upstream/master'
 
Package: sesame
Commit: 95dd0cf02a3daf0054b8aeb4106eb284f8833efb
Author: Wanding Zhou <zhouwanding@gmail.com>
Date: 2022-11-10 21:28:14 -0500
Commit message:

 update
 
Package: sesame
Commit: 9b4905d03e053a69a4e032361559e24eca9e739b
Author: Wanding Zhou <zhouwanding@gmail.com>
Date: 2022-10-19 09:27:17 -0400
Commit message:

 fix KYCG_loadDBs bug
 
Package: AnVILWorkflow
Commit: 1224e0c2e3d5ee170ce007dd37b3ea3b03c24329
Author: Sehyun Oh <sehyunoh@Sehyuns-MacBook-Air.local>
Date: 2022-11-28 16:26:41 -0500
Commit message:

 version bump
 
Package: AnVILWorkflow
Commit: 12e1cc453644d99b2a2082a7d33ed4d1adb950f3
Author: Sehyun Oh <sehyunoh@Sehyuns-MacBook-Air.local>
Date: 2022-11-28 16:26:31 -0500
Commit message:

 update vignette with the public workspace info
 
Package: AnVILWorkflow
Commit: a9d373961b88dc980a5ee17609f8a5f4a0f6d335
Author: Sehyun Oh <sehyunoh@Sehyuns-MacBook-Air.local>
Date: 2022-11-28 16:24:28 -0500
Commit message:

 update gh page title
 
Package: AnVILWorkflow
Commit: 875c94060483f6d06c675e669d9cbfeac7c8edbb
Author: Sehyun Oh <sehyunoh@Sehyuns-MacBook-Air.local>
Date: 2022-11-01 10:14:17 -0400
Commit message:

 updates to build site
 
Package: Rsubread
Commit: f99bcd0dee982b42329f2dc343c6f05546225cf0
Author: Yang Liao <yang.liao@onjcri.org.au>
Date: 2022-11-29 06:48:31 +1100
Commit message:

 Minor wording changes.
 
Package: nullranges
Commit: 087e653aed7b2645373e66b4282cc22c03bc0567
Author: mikelove <michaelisaiahlove@gmail.com>
Date: 2022-11-28 13:48:49 -0500
Commit message:

 typos in new text
 
Package: nullranges
Commit: f99357dc9003da3ff6a3605592a2e78f828d1891
Author: mikelove <michaelisaiahlove@gmail.com>
Date: 2022-11-28 08:51:36 -0500
Commit message:

 update overview vignette, bib
 
Package: excluderanges
Commit: f53e82dfbbc1e614fcb4bd23849493566e0165cb
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-28 07:01:27 -0500
Commit message:

 Logo version bump
 
Package: excluderanges
Commit: 988933cc647f0757ae2db4f1f5a134f50dcaf524
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-28 06:57:10 -0500
Commit message:

 Merge branch 'master' into RELEASE_3_16
 
Package: excluderanges
Commit: 29eccff290caeb279fccc5ecccd3bee6a97b0e45
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-21 07:44:51 -0500
Commit message:

 0.99.7
 
Package: excluderanges
Commit: a2f900806f8f28de316b60718d73b647c5e965e0
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-20 13:48:11 -0500
Commit message:

 0.99.6
 
Package: excluderanges
Commit: 2031cb0cfc15a98bfafd3d0c5282376a3797a586
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-28 06:55:49 -0500
Commit message:

 Logo update
 
Package: excluderanges
Commit: ccb6fd5699b190db3373f7a0df3538ce53ff8e61
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-23 04:51:55 -0500
Commit message:

 New suggestionss welcome!
 
Package: excluderanges
Commit: ef2dd9b19f6e43adbf97cc7c59cb6d7edf4577bf
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-23 04:50:34 -0500
Commit message:

 Add Nordin BEDbase IDs
 
Package: excluderanges
Commit: 0d0cf51e5ae4dcb08adaf61acf310d4966266274
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-21 15:31:47 -0500
Commit message:

 Fix ecxluderanges typo
 
Package: excluderanges
Commit: e8b51165093e06b55ea9be1ce70609b304309cd9
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-21 15:18:37 -0500
Commit message:

 Move safe.directory run
 
Package: excluderanges
Commit: 0805205f253bf98e742baf48197cf5a33a0769f9
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-21 14:58:58 -0500
Commit message:

 Additional git config --global --add safe.directory /__w/excluderanges/excluderanges
 
Package: excluderanges
Commit: 932ea3ed3be5f78936bcb857be32ffd51edd62e6
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-21 14:19:03 -0500
Commit message:

 remove --local from git config
 
Package: excluderanges
Commit: 8b7ba9d45b5ffe3adf227614ceb05bef00dcbb0a
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-21 13:50:37 -0500
Commit message:

 Use cont: "bioconductor/bioconductor_docker:RELEASE_3_16"
 
Package: excluderanges
Commit: a1abceea25cf3dddf5a142317467a0731053ce92
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-21 13:31:41 -0500
Commit message:

 Try without cont: "bioconductor/bioconductor_docker:devel",
 
Package: excluderanges
Commit: 92d2687eecc57b4548aba084f998b6776f172281
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-21 12:35:17 -0500
Commit message:

 re-knit
 
Package: excluderanges
Commit: 64287a9f55293169797c3ff92e775bbc3b349e68
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-20 19:34:43 -0500
Commit message:

 Add Bioconductor link
 
Package: excluderanges
Commit: 2b2501ccb92c14651eebf0ca87b6d7520571a6dd
Author: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>
Date: 2022-11-20 14:22:12 -0500
Commit message:

 Install pkgdown from cran
 
Package: Rsubread
Commit: 75397f48b37c0f5c438576af080df7c1a6da9b18
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2022-11-28 21:53:52 +1100
Commit message:

 Merge branch 'master' of git.bioconductor.org:packages/Rsubread
 
Package: Rsubread
Commit: 224a2e7f69accbbe1d0a58d0f721a2f3702bfb79
Author: Yang Liao <liao_y@svr2672.licr.unimelb.edu.au>
Date: 2022-11-28 21:53:13 +1100
Commit message:

 Supported report of excluded cells.
 
Package: immunoClust
Commit: 0815735ee086daaae510af54cac9b197e1497d28
Author: Till Sörensen <till-antoni.soerensen@charite.de>
Date: 2022-11-28 11:40:11 +0100
Commit message:

 vignette bug
 
Package: RTN
Commit: 2d716364bd12866636f3d29f4d4926e56a13c159
Author: castromaa <mauro.a.castro@gmail.com>
Date: 2022-11-27 22:24:41 -0300
Commit message:

 regular maintenance
 
Package: shinyMethyl
Commit: 7d363af7f93d3043ddd9a44f9dfda122147dced2
Author: Jean-Philippe Fortin <fortin946@gmail.com>
Date: 2022-11-27 14:37:50 -0800
Commit message:

 Removed dontrun
 
Package: shinyMethyl
Commit: 7a1f60a1130e7a4bdb57344828b534b9dea2b9f1
Author: Jean-Philippe Fortin <fortin946@gmail.com>
Date: 2022-11-27 14:33:42 -0800
Commit message:

 Removed old email
 
Package: Rsubread
Commit: cfefcb1c1cef59cd77b0967bf4b1ffe12c72143e
Author: Yang Liao <yang.liao@onjcri.org.au>
Date: 2022-11-28 08:02:42 +1100
Commit message:

 very minor change in screen output
 
Package: shinyMethyl
Commit: e3d8018afe47786acaf70b5f196925f81fcb1a4a
Author: Jean-Philippe Fortin <fortin946@gmail.com>
Date: 2022-11-27 11:27:07 -0800
Commit message:

 All files now portable
 
Package: shinyMethyl
Commit: eab555a69743d413da913f21220e3161de9ac23a
Author: Jean-Philippe Fortin <fortin946@gmail.com>
Date: 2022-11-27 11:20:58 -0800
Commit message:

 Refactored tests
 
Package: shinyMethyl
Commit: 7dd3998820316475982dcadedd7576f1f4dd0341
Author: Jean-Philippe Fortin <fortin946@gmail.com>
Date: 2022-11-27 11:02:47 -0800
Commit message:

 Fixed notes
 
Package: shinyMethyl
Commit: d1159928dd7475f2d642c824c2ca57be730f1789
Author: Jean-Philippe Fortin <fortin946@gmail.com>
Date: 2022-11-27 10:54:06 -0800
Commit message:

 Added dev/rel badges 
Package: shinyMethyl
Commit: 17627ce8d06912ce63f0423d11a02932426eb4b9
Author: fortinj2 <fortin.jeanphilippe@gene.com>
Date: 2022-11-27 10:50:01 -0800
Commit message:

 Adding globals
 
Package: shinyMethyl
Commit: 9caf6713deb1358090b542090175386bc05f8c5b
Author: fortinj2 <fortin.jeanphilippe@gene.com>
Date: 2022-11-27 10:46:13 -0800
Commit message:

 Refactored package.
 
Package: shinyMethyl
Commit: 73bcbe827084ad27abfcf854d06cff8da9c195f9
Author: fortinj2 <fortin.jeanphilippe@gene.com>
Date: 2022-11-27 09:07:43 -0800
Commit message:

 Added .Rbuildignore
 
Package: SEtools
Commit: 561a0c70f950947da8d2e5517773410005c603fb
Author: plger <pl.germain@gmail.com>
Date: 2022-11-27 14:27:17 +0100
Commit message:

 minor doc and version
 
Package: SEtools
Commit: 8066c174ed63f1d17ae2e12d8cdc4dc81cc27559
Author: plger <pl.germain@gmail.com>
Date: 2022-11-27 14:27:06 +0100
Commit message:

 fixed which bug
 
Package: SEtools
Commit: 5e20db21ada8e1e3b5f5d4936a79dbaf6a36d28b
Author: plger <pl.germain@gmail.com>
Date: 2022-11-18 14:32:04 +0100
Commit message:

 minor doc updates
 
Package: protGear
Commit: 317bb9796ccaeb43e93bc35be36ddd005add3c3c
Author: Keniajin <keniajin@gmail.com>
Date: 2022-11-27 14:04:43 +0300
Commit message:

 Merge branch 'devel'
 
Package: protGear
Commit: fa73a287d954cf1ac40f4771bf27cc0ad839cdec
Author: Keniajin <keniajin@gmail.com>
Date: 2022-11-27 14:03:53 +0300
Commit message:

 updated to 1.3.3 and github io page
 
Package: scDblFinder
Commit: 5b1e1b876a61fd0e773fed1b21f3956e7c8e23d6
Author: plger <pl.germain@gmail.com>
Date: 2022-11-21 09:20:05 +0100
Commit message:

 minor doc clarification
 
Package: scDblFinder
Commit: 567c37f790bd792601463f58f673f5f698ab81a3
Author: plger <pl.germain@gmail.com>
Date: 2022-11-21 09:19:02 +0100
Commit message:

 version bump
 
Package: scDblFinder
Commit: abf0d65580ac79c79bac4e0b8e81855cb3578cdb
Author: Pierre-Luc <pl.germain@gmail.com>
Date: 2022-11-21 09:13:41 +0100
Commit message:

 fixed sample reporting in fixed mode #66 
Package: scDblFinder
Commit: cf2859c04da18152e83d94c29fae5d0e6a9c8913
Author: plger <pl.germain@gmail.com>
Date: 2022-11-20 11:22:24 +0100
Commit message:

 version bump for new params
 
Package: scDblFinder
Commit: 070ad97f7bb001f4a3e0ba58d892a70c14dc4a35
Author: Pierre-Luc <pl.germain@gmail.com>
Date: 2022-11-20 11:17:22 +0100
Commit message:

 Merge pull request #65 from xnnba1984/master

Import default hyperparams from Xi and Vasilopoulos 
Package: scDblFinder
Commit: ea473a2191c3985bc3d142437a0491768479650c
Author: xnnba1984 <65501078+xnnba1984@users.noreply.github.com>
Date: 2022-11-14 11:59:27 -0500
Commit message:

 Merge pull request #1 from xnnba1984/xnnba1984-patch-1

Update scDblFinder.R 
Package: scDblFinder
Commit: ccce50a17b63f31590285857d3062174341efbf7
Author: xnnba1984 <65501078+xnnba1984@users.noreply.github.com>
Date: 2022-11-14 11:55:27 -0500
Commit message:

 Update scDblFinder.R 
Package: scDblFinder
Commit: df9020f2affd4d29ac7977058f97f8bf6f311760
Author: plger <pl.germain@gmail.com>
Date: 2022-11-11 14:24:13 +0100
Commit message:

 added 2nd pass to aggregateFeatures, fixed its export
 
Package: scDblFinder
Commit: 477c651c8c0454b393bd664b03bb22f05b4d25d0
Author: plger <pl.germain@gmail.com>
Date: 2022-11-11 14:23:51 +0100
Commit message:

 minor formatting changes
 
Package: ClassifyR
Commit: 88d9f5c8b81b96c274af28b2ccdb0008911c628c
Author: Dario Strbenac <dario.strbenac@sydney.edu.au>
Date: 2022-11-27 21:52:50 +1100
Commit message:

 Merge pull request #56 from SydneyBioX/master

Harmonisation to performancePlot and samplesMetricMap 
Package: ClassifyR
Commit: acc7fad1b55fc6d69d26b4fc2fc7dadfa3c60a0d
Author: Dario Strbenac <dario@maths.usyd.edu.au>
Date: 2022-11-27 21:50:16 +1100
Commit message:

 - Random forest's survival mode now calculates risk values by multiplying sum of survival probabilities by negative one.
- performancePlot and samplesMetricMap now use a variable named metric to consistently refer to the metric.
- samplesMetricMap now has default value of auto for metric. Also, the metric will be calculated rather then stopping with an error, if the metric hasn't been calculated previously using calcCVperformance.
- samplesMetricMap default metric is accuracy, to be consistent with performancePlot.
 
Package: HiContactsData
Commit: 5243433436016438793a5393d536ff6452ba8cd7
Author: js2264 <jacquesserizay@gmail.com>
Date: 2022-11-26 23:34:29 +0100
Commit message:

 bump to 1.1.4
 
Package: HiContactsData
Commit: e5fa842ef901dc3cad9c47774a9b672d4c0a3314
Author: js2264 <jacquesserizay@gmail.com>
Date: 2022-11-26 23:34:11 +0100
Commit message:

 add HiCool log file
 
Package: shinyMethyl
Commit: 75cc179b6d54f5c4b1828c45018d51bf2cf05873
Author: fortinj2 <fortin.jeanphilippe@gene.com>
Date: 2022-11-26 11:19:35 -0800
Commit message:

 Merged with BioC
 
Package: shinyMethyl
Commit: 3b765406acc65a6d72b9bb252754258c174c6f63
Author: fortinj2 <fortin.jeanphilippe@gene.com>
Date: 2022-11-18 17:06:26 -0800
Commit message:

 Changing maintainer
 
Package: shinyMethyl
Commit: b848ba316399fa57d22d1e431b04eaddbe65fb27
Author: jeanphi <jeanphi@vagvlan531.0169.apn.wlan.med.upenn.edu>
Date: 2017-04-12 11:13:08 -0400
Commit message:

 Added drop=FALSE
 
Package: shinyMethyl
Commit: 001166d0a4df222a0c92439ee17c42f99f27a634
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-10-03 13:12:14 -0400
Commit message:

 Fixed control probes
 
Package: shinyMethyl
Commit: 6c91c03e6ef2b4e812662407b8cf8657d06234fa
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-10-03 12:09:35 -0400
Commit message:

 Bumped version
 
Package: shinyMethyl
Commit: 9938f6b2ab83ddcd9cd94e723282455e30577c16
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-10-03 12:04:37 -0400
Commit message:

 Merged conflict
 
Package: shinyMethyl
Commit: 7d6a1bba42afeae55800a9928903d7047c50f59b
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-10-03 12:03:44 -0400
Commit message:

 Merge branch 'devel'
 
Package: shinyMethyl
Commit: c6b906365cb571ef1dea5a2f9d161a2739a8de72
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-10-03 16:03:08 +0000
Commit message:

 Added

From: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@121682 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: bd92164e2cb926e8ccfe8f0090040d9bb3f438f6
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-10-03 16:03:03 +0000
Commit message:

 Warnings as errors

From: jfortin <jfortin@jhsph.edu>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@121681 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 0b2116e03da3424a9126ce3f0447533847883df0
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-10-03 16:02:58 +0000
Commit message:

 Initiating travis

From: jfortin <jfortin@jhsph.edu>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@121680 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 1280dc883acbafd6940b97d463e6c51376f2f53f
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-10-03 16:02:53 +0000
Commit message:

 Initiating traviws

From: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@121679 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: c94283022e3ba413a15666ab6f65db5f827e6160
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-10-03 16:02:48 +0000
Commit message:

 Added

From: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@121678 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 6f219fe2e4889880a2a039b80a70959c1ef4f6b3
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-10-03 12:00:54 -0400
Commit message:

 Added
 
Package: shinyMethyl
Commit: fa9be063b8049aa7282f7656b6efd0ed6a8670e3
Author: jfortin <jfortin@jhsph.edu>
Date: 2016-08-10 09:37:14 -0400
Commit message:

 Warnings as errors
 
Package: shinyMethyl
Commit: 637160574b6aa1cd653fea1e93d94f7390ebbd01
Author: jfortin <jfortin@jhsph.edu>
Date: 2016-08-10 08:39:56 -0400
Commit message:

 Initiating travis
 
Package: shinyMethyl
Commit: 63c025e6c3ea8c8632e872b861e77a3a1344893c
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-08-09 13:39:32 -0400
Commit message:

 Initiating traviws
 
Package: shinyMethyl
Commit: a4666af2f739c0897e81bc36f865e813937950f0
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-10-03 12:00:19 -0400
Commit message:

 Added
 
Package: shinyMethyl
Commit: 601cd8c1a02672a888ec35efe256e6c1d107a15c
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-10-03 11:59:07 -0400
Commit message:

 Merge branch 'master' of github.com:Jfortin1/shinyMethyl
 
Package: shinyMethyl
Commit: 2c67235180ee5165564d6b6ef69c310e313c9bc8
Author: jfortin <jfortin@jhsph.edu>
Date: 2016-08-10 09:37:14 -0400
Commit message:

 Warnings as errors
 
Package: shinyMethyl
Commit: 3a2e74afff0b7158a0f19f168e55045fb4f785c4
Author: jfortin <jfortin@jhsph.edu>
Date: 2016-08-10 08:39:56 -0400
Commit message:

 Initiating travis
 
Package: shinyMethyl
Commit: a9b4d9fb778ab60d11d76cb756084e9ae858389f
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-08-09 13:39:32 -0400
Commit message:

 Initiating traviws
 
Package: shinyMethyl
Commit: 7f0c1caa5eb52d201c0e61f8a8d4fb1c4318e7d2
Author: jfortin <jfortin@jhsph.edu>
Date: 2016-08-10 09:37:14 -0400
Commit message:

 Warnings as errors
 
Package: shinyMethyl
Commit: 4c23e7751b7700e3c3082fdd36caf74c7848caa3
Author: jfortin <jfortin@jhsph.edu>
Date: 2016-08-10 08:39:56 -0400
Commit message:

 Initiating travis
 
Package: shinyMethyl
Commit: 5a07d2103af50f97f02adf6ec6228bd8a5448a90
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-08-09 13:39:32 -0400
Commit message:

 Initiating traviws
 
Package: shinyMethyl
Commit: 834b9d41a6741aedf54cd47d0d2c0079f7a1689c
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-08-09 13:28:06 -0400
Commit message:

 Merge branch 'master' of github.com:Jfortin1/shinyMethyl
 
Package: shinyMethyl
Commit: af24df5b1c8fb038ab3903c7e28d1f48f2cfcdee
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-08-09 15:59:58 +0000
Commit message:

 New version with EPIC

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@119994 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: c2c80dd74b50c445644548132faac35b31935333
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-08-09 15:59:53 +0000
Commit message:

 Added EPIC stuff in README

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@119993 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 91c427615ea66d685a88d60eac26148a36825ec4
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-08-09 15:59:48 +0000
Commit message:

 Added EPIC stuff

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@119992 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 88a83781df87bcb7ea967d03c4aa947686a597c6
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-08-09 15:59:42 +0000
Commit message:

 ADded EPIC stuff

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@119991 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: d259b340c0133cdb34b2b6766dd677bcbde6059d
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-08-09 11:59:11 -0400
Commit message:

 New version with EPIC
 
Package: shinyMethyl
Commit: f5fb7717403f45fa1d64d5c09d111c87dbbafcf9
Author: Jean-Philippe Fortin <jfortin@jhsph.edu>
Date: 2016-08-09 11:58:23 -0400
Commit message:

 Added EPIC stuff in README 
Package: shinyMethyl
Commit: 0685330b8cefd0501552aafe6a2511a0a61d8a4d
Author: Jean-Philippe Fortin <jfortin@jhsph.edu>
Date: 2016-08-09 11:57:33 -0400
Commit message:

 Added EPIC stuff 
Package: shinyMethyl
Commit: a1d171f5ca478e844fd215653e651644b0a97152
Author: Jean-Philippe Fortin <jpfortin@ceb-213bl-002.pmacs.upenn.edu>
Date: 2016-08-09 11:55:41 -0400
Commit message:

 ADded EPIC stuff
 
Package: shinyMethyl
Commit: 49ede1db2eb26556fe36ed8977c548bd51ef18ca
Author: d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-05-15 20:14:22 +0000
Commit message:

 Version bump to trigger package rebuilding now that purl()'ing issue
has been correctly identified. knitr does not create purl()'ed
(Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which
the build system was setting. Now it's not set, so these .R files are
now created. See https://github.com/yihui/knitr/issues/1212 for more.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@117512 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: aa1651ea30be7a6d9132125fb44ca43f8a2d9c2b
Author: d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-05-11 23:05:31 +0000
Commit message:

 Bump version of all packages that use knitr for vignettes.
This is because of an issue (now fixed) in knitr which failed to 
create purl()'ed R files from vignette sources and include them in the
package. This version bump will cause these packages to propagate
with those R files included.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@117323 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: bb65e1e3628ffcdafdf227622eefc92293a7dfa9
Author: d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-05-03 21:30:44 +0000
Commit message:

 bump version after creating 3.3 branch


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@117081 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 838c7abae01d6fb6c2855cbe5138372ddd29f449
Author: d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2016-05-03 21:20:18 +0000
Commit message:

 Bump versions prior to creation of 3.3 branch


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@117079 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 4d6b112e5a88100ea5977d630067cc4c55281e1e
Author: d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-10-13 19:59:53 +0000
Commit message:

 Bumped version number of all packages after creation of 3.2 branch.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@109592 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: b0a1dd2237b3f040e24c63db8494bae6db58beba
Author: d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-10-13 19:36:05 +0000
Commit message:

 Bumped versions of all packages prior to creating 3.2 branch.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@109589 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 89b68146c4b99a8e5fddc6b61553fd490afcb24d
Author: d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-04-16 20:02:44 +0000
Commit message:

 Bump versions in trunk after creation of 3.1 branch.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@102594 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 1c8dc2d7e57be9200636f1242a43b3ac72b0f0a9
Author: d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-04-16 19:42:01 +0000
Commit message:

 Bump versions prior to creating 3.1 branch.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@102591 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: f242c86e5bf17d8dfb833d9d7356830253fa4517
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-04-06 20:42:38 +0000
Commit message:

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Commit id: 8452695664a8f59b9afc265cc8f783897f21caf6

    Update .travis.yml



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@101976 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 8f1c82055c5195c3015ceb2636668deaaa46580e
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-04-06 20:40:25 +0000
Commit message:

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Commit id: c9e6bd22b35a3f59d6d535cf09ec208a53d80201

    Update .travis.yml



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@101974 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
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Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-04-06 20:40:10 +0000
Commit message:

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Commit id: 04a554bf0487d2a50e56ab819e79e4576a104c1a

    Update README.md



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@101973 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
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Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-04-06 20:38:47 +0000
Commit message:

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Commit id: 2fe28a771b03e0c324bec16bc00fbeef3ccf2278

    Update README.md



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@101972 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
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Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-04-06 20:33:36 +0000
Commit message:

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Commit id: f9c1ed9d468fde476e5cdd57e14725d73215d34b

    Added travis file



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@101970 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 7f79b60f0d595ae5540864068d935c040edc9d38
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-01-27 02:02:28 +0000
Commit message:

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Commit information:

Commit id: 6ef541959e63516891dc73015304c9be182be5b3

    Update README.md

Committed by: Jean-Philippe Fortin
Author Name: Jean-Philippe Fortin
Commit date: 2015-01-26 21:02:24 -0500
Author date: 2015-01-26 21:02:24 -0500


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@98731 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 069bbdc1642ef012d4eae7bcb83cccfcda30fdf5
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-01-27 02:01:38 +0000
Commit message:

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Commit information:

Commit id: e4b320d9027604813041cfe7b86b674e1e8e4201

    Updated citation

Committed by: Jean-Philippe Fortin
Author Name: Jean-Philippe Fortin
Commit date: 2015-01-26 21:01:33 -0500
Author date: 2015-01-26 21:01:33 -0500


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@98730 bc3139a8-67e5-0310-9ffc-ced21a209358
 
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Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-01-26 20:59:15 +0000
Commit message:

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Commit id: 571612d889438ac95357cea04899a3bb7a0e03ac

    Update CITATION

Committed by: Jean-Philippe Fortin
Author Name: Jean-Philippe Fortin
Commit date: 2015-01-26 15:59:10 -0500
Author date: 2015-01-26 15:59:10 -0500


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@98715 bc3139a8-67e5-0310-9ffc-ced21a209358
 
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Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-01-26 20:58:56 +0000
Commit message:

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Commit id: bc24b00a5de3969cb87522d3778c56c97084f6ec

    Updated citation

Committed by: Jean-Philippe Fortin
Author Name: Jean-Philippe Fortin
Commit date: 2015-01-26 15:58:52 -0500
Author date: 2015-01-26 15:58:52 -0500


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@98714 bc3139a8-67e5-0310-9ffc-ced21a209358
 
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Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-01-26 20:36:17 +0000
Commit message:

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Commit information:

Commit id: 7c5b89c6d97b3ecfb4bf9a1322c3440913968491

    Fixed typo

Committed by: jfortin
Author Name: jfortin
Commit date: 2015-01-26 15:36:06 -0500
Author date: 2015-01-26 15:36:06 -0500


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@98710 bc3139a8-67e5-0310-9ffc-ced21a209358
 
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Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-01-05 20:01:07 +0000
Commit message:

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Commit information:

Commit id: 0cc64ff653210a1129f6cba6e263641dd343139f

    Changed test data

Committed by: jfortin
Author Name: jfortin
Commit date: 2015-01-05 15:00:56 -0500
Author date: 2015-01-05 15:00:56 -0500


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@98001 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
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Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2015-01-05 19:58:32 +0000
Commit message:

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Commit information:

Commit id: 885bedaed97238213ee42762ea1ae40e9a05ebfd

    Updated test data

Committed by: jfortin
Author Name: jfortin
Commit date: 2015-01-05 14:58:23 -0500
Author date: 2015-01-05 14:58:23 -0500


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@98000 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 0518606d7a6e954152d63997f84bdf83754496da
Author: d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2014-10-13 21:47:41 +0000
Commit message:

 Bumping versions after creating 3.0 release branch.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@95443 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: a0db4c50b7f59c6f12ccc6faffdc17c9c1ea9a4a
Author: d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2014-10-13 21:38:33 +0000
Commit message:

 Bump package versions prior to creating the 3.0 branch.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@95439 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 86facf4898dd4f9c5cd598d7adcb0ebe3aad023c
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2014-08-28 18:10:08 +0000
Commit message:

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Commit information:

Commit id: f480a793b1db14e80264955863876af2188e8b3c
Commit message: Added paper link
Committed by: Jean-Philippe Fortin
Author Name: Jean-Philippe Fortin
Commit date: 2014-08-28 14:10:02 -0400
Author date: 2014-08-28 14:10:02 -0400



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@93679 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 2c9fb980c214d3060224a3ae25b3d4ca3eee6825
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2014-07-24 14:37:54 +0000
Commit message:

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Commit information:

Commit id: 1eddec29a500a29d8f5e7f81f6bd5444a8d92bab
Commit message: Update README.md
Committed by: Jean-Philippe Fortin
Author Name: Jean-Philippe Fortin
Commit date: 2014-07-24 10:37:49 -0400
Author date: 2014-07-24 10:37:49 -0400



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@92809 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: dfe888e2a8cfc8ade8db29ae8f56c7621371de5e
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2014-07-24 14:37:31 +0000
Commit message:

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Commit information:

Commit id: 319b71e1dae428fd1d37e85788a5240302e4d434
Commit message: Update README.md
Committed by: Jean-Philippe Fortin
Author Name: Jean-Philippe Fortin
Commit date: 2014-07-24 10:37:25 -0400
Author date: 2014-07-24 10:37:25 -0400



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@92808 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 45d0641ada3131acb8834cefeffc2da48155beb7
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2014-07-15 19:12:54 +0000
Commit message:

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Commit information:

Commit id: cd90a04e407e82ab2578d7bec8b483d65062790e
Commit message: Bumped version
Committed by: Jean-Philippe Fortin
Author Name: Jean-Philippe Fortin
Commit date: 2014-07-15 15:12:47 -0400
Author date: 2014-07-15 15:12:47 -0400



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@92521 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 8f68444312e28f8b96a30546dbad15f91c0af449
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2014-07-14 18:57:05 +0000
Commit message:

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Commit information:

Commit id: f59b760bb7700a050cdb557bac0c5fc0adc4d20b
Commit message: Added knitr to DESCRIPTION
Committed by: Jean-Philippe Fortin
Author Name: Jean-Philippe Fortin
Commit date: 2014-07-14 14:56:58 -0400
Author date: 2014-07-14 14:56:58 -0400



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@92485 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 79de74a43f65cd65933ed95c0d7947fd57370465
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2014-07-08 15:53:03 +0000
Commit message:

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Commit information:

Commit id: e127bc9bb4c67239bce2b4ad8f3f8336b564f7a0
Commit message: Update README.md
Committed by: Jean-Philippe Fortin
Author Name: Jean-Philippe Fortin
Commit date: 2014-07-08 11:52:59 -0400
Author date: 2014-07-08 11:52:59 -0400



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@92261 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 67d3b7acf48771c58848427c42ebff7ded4332ea
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2014-07-08 15:52:26 +0000
Commit message:

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Commit information:

Commit id: 80febe6ac2db45495f1516a544581e3cfe1af7b5
Commit message: Update README.md
Committed by: Jean-Philippe Fortin
Author Name: Jean-Philippe Fortin
Commit date: 2014-07-08 11:52:21 -0400
Author date: 2014-07-08 11:52:21 -0400



git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@92260 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 02e237b1174237cec04e4ee01df064af9b5112bb
Author: j.fortin <j.fortin@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2014-07-02 18:13:20 +0000
Commit message:

 setting up git-svn bridge

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@92101 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: shinyMethyl
Commit: 4978515ca76301cde8c7084ef144385e5ec2060b
Author: m.carlson <m.carlson@bc3139a8-67e5-0310-9ffc-ced21a209358>
Date: 2014-07-01 20:38:11 +0000
Commit message:

 Adds oposSOM/ pepStat/ Polyfit/ pRolocGUI/ Pviz/ shinyMethyl/ to the repos.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/shinyMethyl@92064 bc3139a8-67e5-0310-9ffc-ced21a209358
 
Package: LEA
Commit: 8edadb210b6aadd4fcc5691063a29bcec2d2e0a4
Author: francois <francois@timc-bcm-66p.home>
Date: 2022-11-26 10:47:35 +0100
Commit message:

 fix inverse.c
 
Package: LEA
Commit: 61db769e3a2c0d2b6124a8c60113d197f39b93c1
Author: francois <francois@timc-bcm-66p.home>
Date: 2022-11-26 10:35:55 +0100
Commit message:

 Merge branch 'master' of https://github.com/bcm-uga/LEA
 
Package: LEA
Commit: c6698e0ad62afa42b426b3be83506935928fa605
Author: francois <francois@timc-bcm-66p.home>
Date: 2022-11-26 10:35:45 +0100
Commit message:

 fix diagonalize
 
Package: LEA
Commit: 5fa2fb70341ba298491aa2ffc801670a70e11f1d
Author: francois <francois@timc-bcm-42p.home>
Date: 2022-11-24 18:55:06 +0100
Commit message:

 back to sylvester
 
Package: sccomp
Commit: b16bc42a302e00c54b3340b19200f3c45876a375
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-26 18:53:50 +1100
Commit message:

 update test parallel
 
Package: sccomp
Commit: 41527cd462189ba713f3d320f8fb256b0ae0d41f
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-26 18:53:01 +1100
Commit message:

 rename
 
Package: sccomp
Commit: 0d5171883c38eebe94482bf404c1f9baa6787c62
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-26 18:27:46 +1100
Commit message:

 fix build ignore
 
Package: sccomp
Commit: 1df7553a5ab4ab752e4d72487d5f722602582337
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-26 18:05:38 +1100
Commit message:

 version UP

Merge branch 'master' of git.bioconductor.org:packages/sccomp

# Conflicts:
#	.Rbuildignore
 
Package: sccomp
Commit: ebedc7bf9dc9af6b4290f2e0d93379e7dac216c9
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-26 17:55:02 +1100
Commit message:

 fix CHECK
 
Package: sccomp
Commit: f984441aa39c28d9b5a3c415f86b53332d6f0d17
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-26 17:32:18 +1100
Commit message:

 delete html
 
Package: sccomp
Commit: 12160740b104f519f50f5c9147f7d1691ffb49dd
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-26 17:30:17 +1100
Commit message:

 fix tests
 
Package: sccomp
Commit: d14c58be12607dcb5347796a776949b9f06ec8cd
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 23:42:55 +1100
Commit message:

 fix test
 
Package: sccomp
Commit: 0a7f6372cf2653ed3423fd53c1724a102443e706
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 19:12:43 +1100
Commit message:

 solve CHECK
 
Package: sccomp
Commit: 1dcfcadad4d51a8b76f920eeb9510e5ed6b1091f
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 17:50:14 +1100
Commit message:

 rbuild ignore
 
Package: sccomp
Commit: 4cb0bbf659cbaf71353bbb6a96444232b0099298
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 17:35:39 +1100
Commit message:

 delete c++
 
Package: sccomp
Commit: 5de8d2d168e2759aac99d93d12342a603da3e73c
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 17:12:14 +1100
Commit message:

 Merge branch 'master' of github.com:stemangiola/sccomp
 
Package: sccomp
Commit: d59ad5fd36c428c4172de9f2edcf33bc23ae5ea3
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 17:11:53 +1100
Commit message:

 drop plotting
 
Package: sccomp
Commit: c2b59a0b325c900863ecf78c2b1169e6940e111a
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 17:11:36 +1100
Commit message:

 verison UP 
Package: sccomp
Commit: 20aa623c7eb58e6ba0d1c89b194c258b376f76f8
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 16:59:28 +1100
Commit message:

 upload stanExports
 
Package: sccomp
Commit: ee1981c0b115c799aa534ff833caeae1cc88b91d
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 16:15:32 +1100
Commit message:

 add c++
 
Package: sccomp
Commit: f04cdf2f2489076a042aa754bd3e53e0308d20f4
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 14:55:52 +1100
Commit message:

 fix for lack of random effect
 
Package: sccomp
Commit: aae80879b5d995c23b6b423dbc85fb6043ed674a
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 11:39:20 +1100
Commit message:

 pull from BIOCONDUCTOR dev

Merge branch 'master' of git.bioconductor.org:packages/sccomp

# Conflicts:
#	DESCRIPTION
 
Package: sccomp
Commit: 76dbe98673159016f3913601e626ac82a15e5915
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 11:37:28 +1100
Commit message:

 Merge pull request #68 from stemangiola/random-continous-slope

Random continous slope 
Package: sccomp
Commit: 60c945c8f19e47d6fa20c9a300900711cdd91151
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 11:37:12 +1100
Commit message:

 Merge pull request #71 from stemangiola/master

rebase 
Package: sccomp
Commit: 74763320bf5ce6bb23f5316d7a36cc650425141c
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 11:23:33 +1100
Commit message:

 pull

Merge branch 'random-continous-slope' of github.com:stemangiola/sccomp into random-continous-slope

# Conflicts:
#	R/utilities.R
 
Package: sccomp
Commit: 50ea30cffc475e7c1e0232bdfd14ce4a64eb1127
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 10:01:41 +1100
Commit message:

 Merge pull request #70 from stemangiola/fix-random-effect-with-intercept

Fix random effect with intercept 
Package: sccomp
Commit: 951829e643e264388eb6a823e71a7fb4467d2301
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 09:58:51 +1100
Commit message:

 add figures scripts
 
Package: sccomp
Commit: e41eafdacc6f0511af198532414156e2954c7f28
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 09:57:37 +1100
Commit message:

 comment
 
Package: sccomp
Commit: 94a28b6fdd32c39f9ed5526f468a71c222d01b53
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-20 23:29:16 +1100
Commit message:

 fixes that do not work yet
 
Package: sccomp
Commit: 125734e8199f5e0602269fe7a156b36fb4a2bf90
Author: J Wokaty <jennifer.wokaty@sph.cuny.edu>
Date: 2022-11-01 11:26:09 -0400
Commit message:

 bump x.y.z version to odd y following creation of RELEASE_3_16 branch
 
Package: sccomp
Commit: a0efa2874cc6f10f8f58b276075810732803a5a7
Author: J Wokaty <jennifer.wokaty@sph.cuny.edu>
Date: 2022-11-01 11:26:09 -0400
Commit message:

 bump x.y.z version to even y prior to creation of RELEASE_3_16 branch
 
Package: ggcyto
Commit: 4ed6b81fe70e412ccf3a45d4f8f929be7dc83f9f
Author: mikejiang <mike@ozette.ai>
Date: 2022-11-25 22:29:00 -0800
Commit message:

 Merge branch 'master' of github.com:RGLab/ggcyto
 
Package: ggcyto
Commit: 8ef210a1160043c00ca1d14dc46975337dafc534
Author: mikejiang <mike@ozette.ai>
Date: 2022-11-25 22:23:07 -0800
Commit message:

 update
 
Package: ggcyto
Commit: 1eb811787accc0ed3416139557fb532b65b49acc
Author: mikejiang <mike@ozette.ai>
Date: 2022-11-25 22:22:38 -0800
Commit message:

 rm scale_x_logicle from vignette because it is broken in ggplot
 
Package: ggcyto
Commit: 0984bfd3350c90a76acf10df8602065a9f6ec9ee
Author: Mike Jiang <wenxin.jiang@gmail.com>
Date: 2022-07-02 12:18:40 -0700
Commit message:

 Update build.yml 
Package: ggcyto
Commit: 5301a5b214ec83880d6f180bcf2c118f74cb0dad
Author: Mike Jiang <wenxin.jiang@gmail.com>
Date: 2022-07-02 10:55:24 -0700
Commit message:

 Update build.yml 
Package: MungeSumstats
Commit: d6c0494c7b8d083ff9f47d85321303c158664e18
Author: Al-Murphy <alanmurph94@hotmail.com>
Date: 2022-11-25 14:36:30 +0000
Commit message:

 Update chain files source to Ensembl
 
Package: MungeSumstats
Commit: 8b00e901f9d0baf9e5b8d59082a4b152108365a6
Author: Alan Murphy <62257358+Al-Murphy@users.noreply.github.com>
Date: 2022-11-25 09:42:07 +0000
Commit message:

 Merge pull request #133 from jonathangriffiths/ensembl-chain

Allow use of Ensembl chain 
Package: MungeSumstats
Commit: d66c01cdc2f1795b2e2144c1a92e14057c649f51
Author: Jonathan Griffiths <7976085+jonathangriffiths@users.noreply.github.com>
Date: 2022-11-24 16:11:07 +0000
Commit message:

 Doc update
 
Package: MungeSumstats
Commit: ff763c18cec356bf57965d4eea637ac729870397
Author: Jonathan Griffiths <7976085+jonathangriffiths@users.noreply.github.com>
Date: 2022-11-24 15:53:52 +0000
Commit message:

 version bump
 
Package: MungeSumstats
Commit: 102aafa89557561891931a95de03a5f5ac512d7b
Author: Jonathan Griffiths <7976085+jonathangriffiths@users.noreply.github.com>
Date: 2022-11-24 15:53:38 +0000
Commit message:

 Docs updates
 
Package: MungeSumstats
Commit: 93c78531d9bd011f6e8af39276a19ae3e6cf410e
Author: Jonathan Griffiths <7976085+jonathangriffiths@users.noreply.github.com>
Date: 2022-11-24 15:44:36 +0000
Commit message:

 Code changes for Ensembl chain
 
Package: Spectra
Commit: 4dece81cab427e8210eb1297332e5bbfc30abf37
Author: Johannes Rainer <5506112+jorainer@users.noreply.github.com>
Date: 2022-11-25 14:52:35 +0100
Commit message:

 Merge pull request #250 from rformassspectrometry/jomain

feat: add chunkapply (issue #249) 
Package: Spectra
Commit: 5c7cd87b3f2b9b53e2e8169b457e1577e3433032
Author: jorainer <johannes.rainer@gmail.com>
Date: 2022-11-24 13:53:30 +0100
Commit message:

 Merge branch 'master' into jomain
 
Package: Spectra
Commit: d9278135589c3cc80ec1fb457a191c5adf39731b
Author: jorainer <johannes.rainer@gmail.com>
Date: 2022-11-23 15:56:08 +0100
Commit message:

 docs: update version
 
Package: Spectra
Commit: 9d8b97f18b9c13d36bf638cac03bf450c7ce92fd
Author: jorainer <johannes.rainer@gmail.com>
Date: 2022-11-23 15:55:54 +0100
Commit message:

 Merge branch 'master' into jomain
 
Package: Spectra
Commit: 5d8c46bda9d2c300e8ed4af10e4f514054353848
Author: jorainer <johannes.rainer@gmail.com>
Date: 2022-11-17 07:51:02 +0100
Commit message:

 docs: add section for handling large data to the vignette
 
Package: Spectra
Commit: 127178a21173330186a5bf755015d8e09e00e761
Author: jorainer <johannes.rainer@gmail.com>
Date: 2022-11-16 14:24:48 +0100
Commit message:

 feat: add chunkapply (issue #249)

- Add function `chunkapply` and add parameter `chunkSize` to `spectrapply` to
  enable chunk-wise processing.
 
Package: ClassifyR
Commit: cbf637e498192e1f215b866e38a16cc61438ca3c
Author: Dario Strbenac <dario.strbenac@sydney.edu.au>
Date: 2022-11-26 00:40:13 +1100
Commit message:

 Merge pull request #55 from SydneyBioX/master

Fix for Sint R Removal and Default Random Forest Now Supports Survival 
Package: ClassifyR
Commit: b7f37b9609273f00022415e95a75fa17bbb00769
Author: Dario Strbenac <dario@maths.usyd.edu.au>
Date: 2022-11-25 22:40:05 +1100
Commit message:

 - performancePlot no longer ignores orderingList.
- Default random forest function now seamlessly works when outcome is a Surv object so classifier doesn't need to be changed from default setting if input data is survival.
 
Package: ClassifyR
Commit: eb01a641ec94e10db2dd423988625264a24bc3e5
Author: Nick <nickrrrr@gmail.com>
Date: 2022-11-25 15:12:52 +1100
Commit message:

 make makevars protable
 
Package: ClassifyR
Commit: b95f22002aa46fe39c83e4f0d1756bc7f064caa5
Author: Nick <nickrrrr@gmail.com>
Date: 2022-11-25 15:12:43 +1100
Commit message:

 remove Sint from C++ code
 
Package: ClassifyR
Commit: 1ffd6658d81b21472d9c9bc8fd2ac32beaac61fe
Author: Nick <nickrrrr@gmail.com>
Date: 2022-11-25 14:47:05 +1100
Commit message:

 change to 2 workers
 
Package: ClassifyR
Commit: a1de49b88d2a40a7ab6c56bc28a53b250afdaacf
Author: Nick <nickrrrr@gmail.com>
Date: 2022-11-25 14:46:47 +1100
Commit message:

 change to 2 workers
 
Package: ClassifyR
Commit: 56367922a9e141da89f76ea7cc06ac0bbb4f1e79
Author: Nick <nickrrrr@gmail.com>
Date: 2022-11-25 14:46:27 +1100
Commit message:

 bump roxygen version
 
Package: ClassifyR
Commit: b0b2eb702f5b435effb1a0944c84fb2c18d1f749
Author: Nick <nickrrrr@gmail.com>
Date: 2022-11-24 11:44:32 +1100
Commit message:

 ignore compiled binaries
 
Package: ClassifyR
Commit: f62c2b4edd43ff235de276d47a56fa8f561d85b4
Author: Nick <nickrrrr@gmail.com>
Date: 2022-11-24 11:28:27 +1100
Commit message:

 add makevar indicating c++11 compilation
 
Package: sccomp
Commit: ee420b69e772779a3e4ca46bb4c567433c8393b9
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 23:42:55 +1100
Commit message:

 fix test
 
Package: sccomp
Commit: 625822d42afc894dbef2ff7911cd727e415fdd94
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 19:12:43 +1100
Commit message:

 solve CHECK
 
Package: sccomp
Commit: c35e34c9001cf787fe83b49f3e445a39ae3de308
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 17:50:14 +1100
Commit message:

 rbuild ignore
 
Package: sccomp
Commit: 7112747c510e861a72d1ef737d61f0f44217b042
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 17:35:39 +1100
Commit message:

 delete c++
 
Package: sccomp
Commit: 0a4db31dde46007ce61d4c5658e04fb97bd38d6d
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 17:12:14 +1100
Commit message:

 Merge branch 'master' of github.com:stemangiola/sccomp
 
Package: sccomp
Commit: 1135cb1c7b267afdb0f03116a1ef3ef721b836bb
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 17:11:53 +1100
Commit message:

 drop plotting
 
Package: sccomp
Commit: fee4c5dc558b72ba48f892134680bb273f0ad7a2
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 17:11:36 +1100
Commit message:

 verison UP 
Package: sccomp
Commit: 6edc1d20ef3649cadf8beca9485cde0df442b50f
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 16:59:28 +1100
Commit message:

 upload stanExports
 
Package: sccomp
Commit: 64759f557abe5e68e32fca281c9a33314bc91454
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 16:15:32 +1100
Commit message:

 add c++
 
Package: sccomp
Commit: d4594c45df5b0e2699350ee59522d1b5de4ba70a
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 14:55:52 +1100
Commit message:

 fix for lack of random effect
 
Package: sccomp
Commit: 0964e984f39368fbe2f22096389a9e8439dbb548
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 11:39:20 +1100
Commit message:

 pull from BIOCONDUCTOR dev

Merge branch 'master' of git.bioconductor.org:packages/sccomp

# Conflicts:
#	DESCRIPTION
 
Package: sccomp
Commit: 99f99debe5614e0455fd46fdee910855a5e11341
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 11:37:28 +1100
Commit message:

 Merge pull request #68 from stemangiola/random-continous-slope

Random continous slope 
Package: sccomp
Commit: 758500a99e8efce59a73008aeb1b7f061addb0b1
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 11:37:12 +1100
Commit message:

 Merge pull request #71 from stemangiola/master

rebase 
Package: sccomp
Commit: b3d8a3683633c5a7cbbffd063aaa5c0758e956b2
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 11:23:33 +1100
Commit message:

 pull

Merge branch 'random-continous-slope' of github.com:stemangiola/sccomp into random-continous-slope

# Conflicts:
#	R/utilities.R
 
Package: sccomp
Commit: 70fffe3d9178c8ae641caddda09d08594008acfa
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 10:12:43 +1100
Commit message:

 detlete html
 
Package: sccomp
Commit: e5fd4bb40a1c965651b860aea5d3fbad8365c7eb
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 10:01:41 +1100
Commit message:

 Merge pull request #70 from stemangiola/fix-random-effect-with-intercept

Fix random effect with intercept 
Package: sccomp
Commit: 35035cb4653c6e4874399810da23014955bc2d64
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 09:58:51 +1100
Commit message:

 add figures scripts
 
Package: sccomp
Commit: cf814431b30fc97cca2b87c96803a77a7f3f2dfd
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 09:57:37 +1100
Commit message:

 comment
 
Package: sccomp
Commit: c2f6b5405c3b712c76e5df6a82bd3bed0caae34c
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-25 09:56:52 +1100
Commit message:

 Update README.md 
Package: sccomp
Commit: f360e65c71f5dbd4f91d81e68385673079c0c6fd
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-20 23:29:16 +1100
Commit message:

 fixes that do not work yet
 
Package: sccomp
Commit: cee10abf359382f3551cee711c5371b90150afc4
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-20 11:44:07 +1100
Commit message:

 allow PCA with uncertainty outputting the draws
 
Package: sccomp
Commit: 84fb14d18555d73ca33a7f38ad0c1964b372f39d
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-20 11:44:07 +1100
Commit message:

 allow PCA with uncertainty outputting the draws
 
Package: sccomp
Commit: 564a838f6ce885f5f410c026ddcc4b8d317bb3e3
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 15:06:42 +1100
Commit message:

 Update DESCRIPTION 
Package: sccomp
Commit: 2cfcc305f76716fbf102f0d7fbea1887f7f4b9c7
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 14:31:35 +1100
Commit message:

 add sccomp.so
 
Package: sccomp
Commit: 5a396db62747b1edc0413a1ec24c51e2503fec67
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 14:26:16 +1100
Commit message:

 dummy


Former-commit-id: 973e89a04cb7d2aaa5aa451fdfdb2b7d3a2266d4 
Package: sccomp
Commit: 78ca5788793e5c49b658491fa57865cbed3ab676
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 14:25:19 +1100
Commit message:

 dummy

Merge branch 'master' of github.com:stemangiola/sccomp


Former-commit-id: f85ffdfe223e0a889997f67efd5111ee04d2d949 
Package: sccomp
Commit: 19f9bf34f1797052e86cd2bb57f598d06a94c215
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 14:12:57 +1100
Commit message:

 remove sccomp.so


Former-commit-id: b24618ab9535d582595ba082183bbda481f44357 
Package: sccomp
Commit: 2dcdf7996c24753377fc00c04afd88e4665467ef
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 14:12:12 +1100
Commit message:

 dummy


Former-commit-id: 0a64775a6c35a43ef7b64fb17516c9c72bb8f607 
Package: sccomp
Commit: 94997a675578518e8661df44d9b906d329e74fe1
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 13:52:55 +1100
Commit message:

 include sccomp.so


Former-commit-id: 7264bb969ffe370aa413cda9c12c4e27bfa149b2 
Package: sccomp
Commit: 3fd7c723b2bcab515618c91a8e37d9c35dc2939d
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 13:51:54 +1100
Commit message:

 Merge branch 'master' of github.com:stemangiola/sccomp
 
Package: sccomp
Commit: 4432cef37a16c78275c0feef104cb25283c56bec
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 13:51:07 +1100
Commit message:

 Merge branch 'random-continous-slope' of github.com:stemangiola/sccomp into random-continous-slope
 
Package: sccomp
Commit: a29aa09a396db900ff6b38f06f615b409f2864ca
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 13:51:07 +1100
Commit message:

 Merge branch 'random-continous-slope' of github.com:stemangiola/sccomp into random-continous-slope
 
Package: sccomp
Commit: ae8046662ac94689d0ba240fc762b833ddb83d0c
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 13:49:39 +1100
Commit message:

 fix contrasts for missing names
 
Package: sccomp
Commit: 3911bd3fb4d9e38535b68788866a85fe6c71b00b
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-18 13:49:39 +1100
Commit message:

 fix contrasts for missing names
 
Package: sccomp
Commit: 44d5e492e262006e272cf65b2925df3969664a0c
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-16 19:10:00 +1100
Commit message:

 make random effects able with contrasts
 
Package: sccomp
Commit: 2a6e75ceed7af8440de1180c94186c9db4218196
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-16 19:10:00 +1100
Commit message:

 make random effects able with contrasts
 
Package: sccomp
Commit: ae0076e2bd0df7d0a6d01ea6604d925230cbae44
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-15 09:08:38 +1100
Commit message:

 Update check-bioc.yml 
Package: sccomp
Commit: d8e120a9aec6bb58eabf78f86e28ef63763b5f27
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-14 11:17:46 +1100
Commit message:

 fixes for normal models
 
Package: sccomp
Commit: 6e03c070c786c45fb4ef6294ea2ca74823add050
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-14 11:17:46 +1100
Commit message:

 fixes for normal models
 
Package: sccomp
Commit: e72f761593da5c256119200afd5859ee11a5fe36
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-09 16:00:18 +1100
Commit message:

 allow to create intercept for generate data for intercept-free models
 
Package: sccomp
Commit: 6a7c77e46c01bbd947c4606fd6172586c8d82704
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-09 16:00:18 +1100
Commit message:

 allow to create intercept for generate data for intercept-free models
 
Package: sccomp
Commit: f99001784c4e68921ec9452f51a97504fe4e44f2
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-09 09:40:16 +1100
Commit message:

 Merge branch 'master' into random-continous-slope 
Package: sccomp
Commit: ae07e22682cc9f62709896a3d66616157364ed85
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-11-09 09:40:16 +1100
Commit message:

 Merge branch 'master' into random-continous-slope 
Package: sccomp
Commit: 8472497d02dc5a5e9b0b71bcd42158cfc982e5fe
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-09 09:38:50 +1100
Commit message:

 fix contrasts
 
Package: sccomp
Commit: de00396b8c16556ce2f4b945fb21f6524720dcde
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-09 09:38:50 +1100
Commit message:

 fix contrasts
 
Package: sccomp
Commit: ffc2928532867adddaa2070b8027647d96b0b0db
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-02 11:02:04 +1100
Commit message:

 fix contrasts
 
Package: sccomp
Commit: 5ca0ec24797dc23988e7ec84f3d079c0a0bee10e
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-02 11:02:04 +1100
Commit message:

 fix contrasts
 
Package: sccomp
Commit: 881f23e2ce450aeb81a01ce6bf77af4581589abd
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-02 11:01:45 +1100
Commit message:

 avoid check
 
Package: sccomp
Commit: d583ab20b2e92ab57d2cf60a7c7a2dc5f42445c4
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-11-02 11:01:45 +1100
Commit message:

 avoid check
 
Package: sccomp
Commit: c0dc5e42fdc46aa6346dc72d57dcc6509351de4e
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-27 04:10:55 +1100
Commit message:

 fix
 
Package: sccomp
Commit: 3b1c8adb0cce19e76c8e9f33aeeaef19ff79a047
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-27 04:10:55 +1100
Commit message:

 fix
 
Package: sccomp
Commit: 4dc3a87b7fa26b012bcc797618fc16384e9d60fc
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-27 03:49:32 +1100
Commit message:

 fix tests
 
Package: sccomp
Commit: a80bf4b7c4b9e5a35d80bbf40d71b8a8bbc72e74
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-27 03:49:32 +1100
Commit message:

 fix tests
 
Package: sccomp
Commit: 19c2b95b4c01dba7fd59507a1f6291bd28638ce7
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-27 00:14:50 +1100
Commit message:

 restructure random intercept/slope table and allow for continuous random covariate
 
Package: sccomp
Commit: d5ae5346b3493165fbcdb87922cfacd7e3375dd7
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-27 00:14:50 +1100
Commit message:

 restructure random intercept/slope table and allow for continuous random covariate
 
Package: sccomp
Commit: 8d4c3b83c38c1ab190bff3f6ba5fa18036aeaf61
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-26 05:46:29 +1100
Commit message:

 comment
 
Package: sccomp
Commit: 91bbde572fb5cd1f41cc2e3fea0b8168aa2787b7
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-26 01:42:51 +1100
Commit message:

 fix tests
 
Package: sccomp
Commit: 471c56b439311100b00a9ab676c8eec06d2bcd56
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-26 01:42:51 +1100
Commit message:

 fix tests
 
Package: sccomp
Commit: f9832eec597799769de644234277ffd3a90ebd10
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-26 00:10:14 +1100
Commit message:

 typo
 
Package: sccomp
Commit: 264bf0c79b444a3307f0bc100da2d48fd07036c6
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-26 00:08:11 +1100
Commit message:

 version UP
 
Package: sccomp
Commit: ca8ce48b682d7d8fd3e0650225d2f0f821d563d1
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-26 00:07:55 +1100
Commit message:

 pull upstream

Merge branch 'master' of git.bioconductor.org:packages/sccomp

Conflicts:
	DESCRIPTION
 
Package: sccomp
Commit: e9728225748b227efe8a16409947a74f3a59f71c
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-25 22:56:03 +1100
Commit message:

 update docs
 
Package: sccomp
Commit: 67f58e9d5f6e97dfa97017a8037905dd1ce8ff49
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-25 22:53:11 +1100
Commit message:

 small fix
 
Package: sccomp
Commit: b2c0370051d5ee28d181c95c477afa01cdb673cc
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-25 22:53:11 +1100
Commit message:

 small fix
 
Package: sccomp
Commit: 1e7d28429f080b98c7d14cb14f0d1038773b2f9e
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-25 06:05:58 +1100
Commit message:

 fix replicate data
 
Package: sccomp
Commit: cea20c25af560713fee9a1469ac9a74953cf366f
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-25 06:05:58 +1100
Commit message:

 fix replicate data
 
Package: sccomp
Commit: 48ec0f5e8af389309431fc5b2d594fbbc415d254
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-25 02:36:44 +1100
Commit message:

 fixed replicate_data for multilevel model
 
Package: sccomp
Commit: 454962249265d2dc51b1fb379a18c8963ba95682
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-25 02:36:44 +1100
Commit message:

 fixed replicate_data for multilevel model
 
Package: sccomp
Commit: 75c6cd24cca1650fe93e7c0d702e2fca4c04a35d
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-25 01:51:28 +1100
Commit message:

 fix for unilevel model
 
Package: sccomp
Commit: 05140764c04d1b70ea37cab75fc0558e15800763
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-25 01:51:28 +1100
Commit message:

 fix for unilevel model
 
Package: sccomp
Commit: 158da476178760091b108ae51f0d8547b9c578be
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-24 01:58:48 +1100
Commit message:

 fix miltilevel multiple
 
Package: sccomp
Commit: fcf829cdff12730f505e4a42acf4dc69a10385b1
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-24 01:58:48 +1100
Commit message:

 fix miltilevel multiple
 
Package: sccomp
Commit: caba554dd043c30f75e589c2de9a0e7baf3da7e0
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-23 19:50:05 +1100
Commit message:

 expanded multilevel to multiple
 
Package: sccomp
Commit: 05157881287c7150e1626104d38e19fcc15ed9c4
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-23 19:50:05 +1100
Commit message:

 expanded multilevel to multiple
 
Package: sccomp
Commit: 01d72a118ec0a73e86f6648fcfb6f0a3cfacd000
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-21 02:56:22 +1100
Commit message:

 rebase

Merge branch 'random-intercept' into remove-unwanted-variation

# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.
 
Package: sccomp
Commit: baa49ce1dbd246deeb286c3aab923886baf7fe29
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-21 02:39:53 +1100
Commit message:

 fix tests
 
Package: sccomp
Commit: 28dad290e41740fd6be061b8e326639ecf756e6f
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-21 01:13:06 +1100
Commit message:

 Merge branch 'random-intercept' of github.com:stemangiola/sccomp into random-intercept
 
Package: sccomp
Commit: c9e4c64a61075e20f5714abf251ee7f1283818a2
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-21 01:12:52 +1100
Commit message:

 fix dependencies
 
Package: sccomp
Commit: c76abf845d6b3e9bc98cc0be39af2b3ea3d8154f
Author: Stefano Mangiola <mangiolastefano@gmail.com>
Date: 2022-10-21 00:36:26 +1100
Commit message:

 Update README.Rmd 
Package: sccomp
Commit: c2b26ba1e9b89167d728db3095f0b39ad122d9fc
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-21 00:09:13 +1100
Commit message:

 fix parenthesis
 
Package: sccomp
Commit: da30973df54523278f580fb619e9166a617156cd
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-20 23:13:56 +1100
Commit message:

 second implementation based on residuals
 
Package: sccomp
Commit: 1fee712762a2165e786c9b8d32e7e72b8fe747ef
Author: stemangiola <mangiolastefano@gmail.com>
Date: 2022-10-19 05:07:11 +1100
Commit message:

 added the first implementation of the remove unwanted variation
 

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