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GIT Logs

This is a list of recent commits to git.bioconductor.org, the master(development) branch of the Bioconductor GIT repository.

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Package: GenomicFeatures
Commit: f21fb9a2eafd67dd9e66642fcf64885852d95032
Author: vobencha <valerie.obenchain@roswellpark.org>
Date: 2018-11-17 09:57:28 -0800
Commit message:

 Note examples that take more than 2GB memory and cannot be run on 32-bit Windows.
 
Package: msPurity
Commit: f574e28945e4724a922be7b451b4275d4695987a
Author: tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-11-17 15:39:53 +0000
Commit message:

 included database schema html into vignette
 
Package: msPurity
Commit: 56e347f776813d2257c75e7f3e3447539a6bf083
Author: Thomas N Lawson <thomas.nigel.lawson@gmail.com>
Date: 2018-11-15 13:40:36 +0000
Commit message:

 delete old readme 
Package: HDF5Array
Commit: dbba100f68c22a9db791d669c557f19662a034ad
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-17 03:26:43 -0800
Commit message:

 More work on h5mread()
 
Package: HDF5Array
Commit: 9b349524573a5a89275b00122f08b151732f4726
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-17 02:40:59 -0800
Commit message:

 More work on h5mread()
 
Package: AneuFinder
Commit: e7af06424a56e3fbcc872fb045d36d89d27c761a
Author: ataudt <aaron.taudt@gmail.com>
Date: 2018-11-17 09:13:10 +0100
Commit message:

 bumped version to 1.11.1
 
Package: AneuFinder
Commit: 62ed280f8b7e573a05f1962c169a5f7313e5aea8
Author: ataudt <aaron.taudt@gmail.com>
Date: 2018-11-17 09:11:37 +0100
Commit message:

 fixed dfplot.seg not found bug
 
Package: HDF5Array
Commit: d405b158e2357851d44f71ca084d6f76cb0bed1d
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-16 23:35:43 -0800
Commit message:

 More work on h5mread()
 
Package: RCy3
Commit: 8db981106eadad530bb146aa2bc89a3e1da4f7da
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2018-11-16 18:58:54 -0800
Commit message:

 version bump
 
Package: RCy3
Commit: 1af4fc1bb945807038a098545fa2d1a57ad26358
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2018-11-16 18:56:54 -0800
Commit message:

 doc fix: add step to vignette
 
Package: RCy3
Commit: 15f787a12e7cb8628960d54bfea00a3d01a07888
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2018-11-16 18:50:57 -0800
Commit message:

 version bump
 
Package: RCy3
Commit: d21d9ce0bb22232054fd36bee1074689dedb884d
Author: Alexander Pico <apico@gladstone.ucsf.edu>
Date: 2018-11-16 18:47:09 -0800
Commit message:

 doc fix: new vignette
 
Package: HDF5Array
Commit: 87219c26c3d9e45d1c06d4b54a02fb795818900c
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-16 18:33:47 -0800
Commit message:

 More work on h5mread()
 
Package: tximeta
Commit: 06915eee21d50e5cfb02c1f912f7f7728e276a60
Author: mikelove <michaelisaiahlove@gmail.com>
Date: 2018-11-16 20:35:55 -0500
Commit message:

 adding alevin support
 
Package: splatter
Commit: 1d2175fe2735c84ad071cd8fe903d0cd747d3b92
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2018-11-17 12:12:19 +1100
Commit message:

 Fix bugs in vignette

scater normalise renamed to normalize
 
Package: splatter
Commit: 4dfcee4a102999405ef17c333e7f89a554d52e9f
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2018-11-02 10:56:57 +1100
Commit message:

 Bioconductor 3.9 devel
 
Package: splatter
Commit: eb571182d3fd6672a82b53ae0172a8a4e6a45cd8
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2018-11-02 10:49:04 +1100
Commit message:

 Merge branch 'master' of git.bioconductor.org:packages/splatter

* 'master' of git.bioconductor.org:packages/splatter:
  bump x.y.z versions to odd y after creation of RELEASE_3_8 branch
 
Package: splatter
Commit: 803cb5e086640b9219a53950b01d282cbf836b86
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2018-11-02 10:46:12 +1100
Commit message:

 Bioconductor 3.8 release version
 
Package: splatter
Commit: e9e6de851627deca0441fd5b2447ffab05036b8b
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2018-11-02 10:40:07 +1100
Commit message:

 Merge branch 'RELEASE_3_8'

* RELEASE_3_8:
  bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch
 
Package: plyranges
Commit: 4d5f1fc319998c3c325426ca16a3c5ecaa5a0577
Author: Stuart Lee <lee.s@wehi.edu.au>
Date: 2018-11-17 11:57:36 +1100
Commit message:

 version bump; R3.6 biocgenerics::lengths no longer exported
 
Package: plyranges
Commit: 6daf585711b3d7e512e4136fa136912685956bc8
Author: Stuart Lee <lee.s@wehi.edu.au>
Date: 2018-11-17 11:53:18 +1100
Commit message:

 remove biocgenerics lengths call
 
Package: plyranges
Commit: ccd18ec63f345b183e0fde1f6be6e281e802b97a
Author: Stuart Lee <lee.s@wehi.edu.au>
Date: 2018-10-31 11:28:03 +1100
Commit message:

 add BiocManager
 
Package: plyranges
Commit: 7b2a81630b30ca12b99f0e438c081198bb30ffd1
Author: Stuart Lee <lee.s@wehi.edu.au>
Date: 2018-10-31 11:23:02 +1100
Commit message:

 release version bump
 
Package: plyranges
Commit: 3ebf4f970ea89c8230647981a46d796a0644d2a3
Author: Stuart Lee <lee.s@wehi.edu.au>
Date: 2018-10-31 11:18:04 +1100
Commit message:

 changes to devtools
 
Package: NADfinder
Commit: 837d449be58db312a1f2d34ad44a1539da9d819f
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-16 16:06:26 -0800
Commit message:

 No more lengths() generic in BiocGenerics
 
Package: HDF5Array
Commit: 8c87ebffdeca6c2e560e4a380befe738c7ae4eeb
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-16 15:06:01 -0800
Commit message:

 More work on h5mread()
 
Package: CoGAPS
Commit: afb607895733696c2f66a7d5aa0ee3c9ab3d797b
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-16 17:39:31 -0500
Commit message:

 added time to worker message
 
Package: CoGAPS
Commit: c4ce53ef78c8f7de0a492ead2416522bfdadec76
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-16 16:15:25 -0500
Commit message:

 added worker print message when finished
 
Package: CoGAPS
Commit: 19d9c68b9ffea3656318208e5bd00f9ac8e2f184
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-16 13:02:25 -0500
Commit message:

 added change log
 
Package: MAST
Commit: 0a34c4fd15b195bfb291e7a1832c9eecaf1c6122
Author: Andrew McDavid <amcdavid@fhcrc.org>
Date: 2018-11-16 14:52:12 -0500
Commit message:

 version bump for rebuild
 
Package: MAST
Commit: 5ebdf57ef67e418ba68738dd3352d9cacd2f43b8
Author: Andrew McDavid <amcdavid@fhcrc.org>
Date: 2018-11-16 14:41:25 -0500
Commit message:

 Bioc devel version bump.
Merge branch 'master' of github.com:RGLab/MAST
 
Package: MAST
Commit: fd97bc30276f09b33b1fc543179a5e963164b8ed
Author: Greg Finak <greg.finak@gmail.com>
Date: 2018-10-29 11:48:39 -0700
Commit message:

 Rename NEWS to NEWS.md 
Package: MAST
Commit: e958c1ba15bd4f425beb25d53766b9e96df50fa6
Author: gfinak <greg.finak@gmail.com>
Date: 2018-10-26 15:39:42 -0700
Commit message:

 news!
 
Package: MAST
Commit: c3d2c6515b948991db6e8c50eadc45a124c13a58
Author: gfinak <greg.finak@gmail.com>
Date: 2018-10-26 15:39:09 -0700
Commit message:

 Update documentation. Fix various warnings and errors. Bump version.
 
Package: MAST
Commit: 6e94c11235c234ee49de7abca545c03d5193b81c
Author: gfinak <greg.finak@gmail.com>
Date: 2018-10-26 09:40:52 -0700
Commit message:

 weighted residuals were not being returned by "C_influence" .Call
 
Package: MAST
Commit: 516e8eeb09f8f03af0fdfc39c73f0a8600c120cd
Author: Greg Finak <greg.finak@gmail.com>
Date: 2018-08-27 10:56:30 -0700
Commit message:

 Merge pull request #99 from dburkhardt/master

Correcting README typo 
Package: MAST
Commit: 71a688d569fe5f077a6227b8783c56ce3ee04355
Author: Daniel Burkhardt <burkhardt.d.b@gmail.com>
Date: 2018-08-27 11:58:22 -0400
Commit message:

 Correcting README typo 
Package: GSReg
Commit: e6b34a4d546fd4ee41ce020cb1a832a70db7553e
Author: Bahman Afsari <bahman@Bahmans-MacBook-Pro.local>
Date: 2018-11-16 14:30:29 -0500
Commit message:

 Updating Vignette so that it works in Bioconductor according to Brian Ripley and Luigi Marchionni
 
Package: CoGAPS
Commit: c072e408f6894accf5d863424037b2ad49231d53
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-16 12:48:32 -0500
Commit message:

 bump version and update docs
 
Package: CoGAPS
Commit: 71a986af43eacd063d4dffae449be5f69d61cdac
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-16 12:48:19 -0500
Commit message:

 add tests for seed/thread consistentcy
 
Package: CoGAPS
Commit: 46ac3b770b024996c8ba89c4b1751682a7795748
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-16 12:47:56 -0500
Commit message:

 check more possible errors in the input data
 
Package: CoGAPS
Commit: d08349ca8feb55f449d1cf62917cca5a7c0420a0
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-16 12:47:07 -0500
Commit message:

 don't reorder rows/cols in distributed CoGAPS
 
Package: recountWorkflow
Commit: 01d8ce87c14eebe1e1d27fc85f5fa647bac3da47
Author: Leonardo Collado Torres <lcollado@jhsph.edu>
Date: 2018-11-16 11:00:24 -0500
Commit message:

 v1.7.1 -- fix Gencode v25 gtf url
 
Package: Pigengene
Commit: 36d36d4e5ee0165692c0289e2fd8def8d4060862
Author: Habil Zare <habil_zare@yahoo.com>
Date: 2018-11-16 09:16:39 -0600
Commit message:

 Pigengene:multi map
 
Package: TFBSTools
Commit: 0e44f9e03014fbb36aff4b6d9013eb37528e57ce
Author: Ge Tan <gtan@me.com>
Date: 2018-11-16 15:48:49 +0100
Commit message:

 version 1.21.2

more flexible readJASPARMatrix function
 
Package: scran
Commit: 59eeee49d55ce74bac7e98bf37aa06302041fce5
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-16 13:33:30 +0000
Commit message:

 Minor fixes to quickCluster tests for altmatrices.
 
Package: scran
Commit: 1748769cd6f5b35d25c14bc53fa79951b44326ad
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-16 13:33:15 +0000
Commit message:

 Updated NEWS, bumped version and date.
 
Package: scran
Commit: 86d4f010dcc116a4484d34c4bba60707fa0598dd
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-16 13:29:56 +0000
Commit message:

 Reverted to min.size=100 for quickCluster.
 
Package: scran
Commit: 558d3d87470700f52fc9e63555ddd359f5ccd025
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-15 14:15:22 +0000
Commit message:

 Updated quickCluster tests.
 
Package: scran
Commit: ea1b4f437f99e72acd805dbe030cdab5a68db1d1
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-15 14:08:39 +0000
Commit message:

 Update computeSumFactor tests for new behaviour.
 
Package: scran
Commit: a3393b28a2032580e4146d3b1648c3a324d324b2
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-15 14:08:12 +0000
Commit message:

 Minor edits to forge_system, avoid error with no sizes.
 
Package: scran
Commit: b74d970b6940d189c83c80f166622dac3c19aec4
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-15 14:03:08 +0000
Commit message:

 Bugfixes for below-sizes clusters, corrected library norm.
 
Package: scran
Commit: 94f745c4d72fe34433f876b15fcc3ed1c9887d7d
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-15 13:31:00 +0000
Commit message:

 Further reduced default minimum size in quickCluster.
 
Package: scran
Commit: 247720ec89a1968ed4da56bd3befa20d69eb2986
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-15 13:30:20 +0000
Commit message:

 Updated computeSumFactors docs about library size norm.
 
Package: scran
Commit: 1c849f8092bbdc2ec7a74d790d0e7b6aa2c23c58
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-15 13:24:04 +0000
Commit message:

 Degrade to lib size norm in small clusters for computeSumFactors.
 
Package: switchBox
Commit: a83aeddc2c8b5804aacc64d308563df9ea060def
Author: Luigi Marchionni <marchion@gmail.com>
Date: 2018-11-16 08:46:25 -0500
Commit message:

 Changed the order of latex packages according to Brian Ripley's suggestion
Merge remote-tracking branch 'upstream/master'
 
Package: switchBox
Commit: c63019a3b52c4ff170cf444a6549b463652db369
Author: Luigi Marchionni <marchion@gmail.com>
Date: 2018-11-16 08:30:07 -0500
Commit message:

 Changed order of loading latex packages

Changed order of loading latex packages according to Brian Ripley suggestion
 
Package: matchBox
Commit: 7fcbf4bbe0007280c917b2b1e08cc44643047ac5
Author: Luigi Marchionni <marchion@gmail.com>
Date: 2018-11-16 08:42:48 -0500
Commit message:

 Modified order of latex packages according to Brian Ripley's suggestions
Merge remote-tracking branch 'upstream/master'
 
Package: matchBox
Commit: b7050935f2d254d33683d55c29975a62f3dd2fe9
Author: Luigi Marchionni <marchion@gmail.com>
Date: 2018-11-16 08:34:44 -0500
Commit message:

 Changed order of latex plackages

Changed order of latex packages according to Brian Ripley suggestions
 
Package: Prostar
Commit: c5c1aa81dbb06289025f217e97b9c99ad9a6b550
Author: Samuel Wieczorek <samuel.wieczorek@cea.fr>
Date: 2018-11-16 14:42:25 +0100
Commit message:

 modify title in MV plots for Imputation
 
Package: simpleSingleCell
Commit: d9b3f15b0b4239a8c71784d30a52b6732385a8df
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-16 13:15:26 +0000
Commit message:

 Bumped version number, date.
 
Package: simpleSingleCell
Commit: c1c6f61f56630a96ca952dcd39a88cb5244de78b
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-16 13:11:30 +0000
Commit message:

 Centralized choice of cluster and its references in text.
 
Package: HDF5Array
Commit: 1869d9b4cc6af4a7b5f769e6bc227fe094065d51
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-16 04:40:13 -0800
Commit message:

 More work on h5mread()
 
Package: DAPAR
Commit: 19b7c1affc62ad68ec042c953e32fe74e3ead780
Author: Samuel Wieczorek <samuel.wieczorek@cea.fr>
Date: 2018-11-16 13:31:22 +0100
Commit message:

 modify title in MV plots for Imputation
 
Package: ChIC
Commit: 03c228de310b0e1bfcce6b8803301632be04eb99
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-16 11:27:57 +0100
Commit message:

 version bump
 
Package: ChIC
Commit: f6609206e1b34326a53e19d3d94bd950ea871e74
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-16 11:26:57 +0100
Commit message:

 version bump
 
Package: ChIC
Commit: 621e96c7aa811e0c9d95b924911584644176cfbe
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-16 11:26:01 +0100
Commit message:

 increasing ChIC.data version dependency
debugging for BiocCheck
 
Package: ChIC.data
Commit: b336399c469de3008acd2a6bad059ff450e0253e
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-16 10:18:14 +0100
Commit message:

 Merge branch 'master' of git.bioconductor.org:packages/ChIC.data
 
Package: ChIC.data
Commit: 59501c761dc3271751bbd3dc702cb9de405d965c
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-16 09:54:01 +0100
Commit message:

 adding dm3 with new metagene object (contains more genes because of merging the transcripts for each gene), removing dm6
 
Package: ChIC.data
Commit: 485c7f8c6a4169749bb37581c04cad3e8d2253b5
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-09 19:14:23 +0100
Commit message:

 removing U from the chromosomes onjects in fly
 
Package: ChIC.data
Commit: 5e4f8aa35c8eeb48a1ca0f2bfa784a6760fbae5c
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-07 18:49:47 +0100
Commit message:

 roxygen the new Rd objects for dm3 and dm6
 
Package: ChIC.data
Commit: b37c078e464dff8b50c65dc8737579fc97fcaacb
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-07 18:25:09 +0100
Commit message:

 adding annotations for fly: dm3 and dm6
 
Package: ChIC
Commit: 5c0e9a1bb1dd12df7181ebebfd2288d7807985bb
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-16 10:21:21 +0100
Commit message:

 adding dm3 and debugging for fly
 
Package: ChIC
Commit: dbafe6637344d8006eadd7de5127c3501712d06a
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-16 10:20:53 +0100
Commit message:

 Merge branch 'master' of git.bioconductor.org:packages/ChIC
 
Package: ChIC
Commit: 501bca12fed808fd50b8f9deaaf2e5e42758e213
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-13 11:08:30 +0100
Commit message:

 debugging for fly. check if chromosomenames start with "chr"
 
Package: ChIC
Commit: 685fcec0b248286bc421a38ab2609876fae76251
Author: carmencita <carmen.livi@ifom.eu>
Date: 2018-11-07 18:51:32 +0100
Commit message:

 updating annotation use for dm3 and dm6
 
Package: pcaExplorer
Commit: 38ee7f259301e2f7c603c2c2dddaea03b197c4c3
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2018-11-16 10:07:59 +0100
Commit message:

 Version 2.9.2 - bump, edited news, updated pkgdown docs
 
Package: pcaExplorer
Commit: 2d7c4ba292cad92757cead773e08467ca3025e5e
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2018-11-16 09:58:48 +0100
Commit message:

 added param and functionality to return early the list of top ranked genes with hi loadings
 
Package: pcaExplorer
Commit: 599175380cd812d9cd6b804bf98904634e7b2e84
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2018-11-16 09:57:14 +0100
Commit message:

 padj now performed with BY - better handles dependencies among GO terms. Still set to FALSE as default
 
Package: pcaExplorer
Commit: ccd90669e01604daca710e4d120e2db5994c4156
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2018-11-15 00:11:02 +0100
Commit message:

 fixing up travis settings
 
Package: HDF5Array
Commit: b8b321619fe40fc7599d3df20c43a74553a26f7c
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-16 00:34:59 -0800
Commit message:

 More work on h5mread()
 
Package: HDF5Array
Commit: 4e10eee94fce83a5fcd8082d8458b3ae2395336f
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-15 16:28:17 -0800
Commit message:

 More work on h5mread()
 
Package: compartmap
Commit: 23865762212fdf3aaeac29506d0c806bdb6e8bee
Author: Ben Johnson <ben.johnson4343@gmail.com>
Date: 2018-11-15 18:20:23 -0500
Commit message:

 resolve conflict with upstream/master
 
Package: compartmap
Commit: 8450046e42ae008c411c5be3a4b10624b853ea5c
Author: Ben Johnson <ben.johnson4343@gmail.com>
Date: 2018-11-15 18:15:24 -0500
Commit message:

 version bump
 
Package: compartmap
Commit: 971d46c55512b407af1aeec05d55dda899c8ea89
Author: Ben Johnson <ben.johnson4343@gmail.com>
Date: 2018-11-05 17:29:18 -0500
Commit message:

 adjust smoothing and return left sing vec
 
Package: BiocPkgTools
Commit: 821012b4e719fce5762bd88b1d33816e612f956f
Author: Sean Davis <seandavi@gmail.com>
Date: 2018-11-15 18:11:03 -0500
Commit message:

 add github details gathering functionality
 
Package: TFBSTools
Commit: b4536126ff841b005b444bfc75b260fe12fdd07c
Author: Ge Tan <gtan@me.com>
Date: 2018-11-15 23:14:20 +0100
Commit message:

 version 1.21.1

improve readJASPARMatrix
 
Package: CoGAPS
Commit: a4614482fd644dc93964dc8e3a24e82c06999354
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-15 17:05:24 -0500
Commit message:

 version bump and update vignette
 
Package: CoGAPS
Commit: 56b74a6ccf2f09c0dcf143c04bcc147818665b9f
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-15 16:58:54 -0500
Commit message:

 store atom and chisq history
 
Package: HDF5Array
Commit: 0b87ce0353fd88f12236491d8727f6a6da038fca
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-15 13:54:32 -0800
Commit message:

 More work on h5mread()
 
Package: CoGAPS
Commit: 12b79d35e5d74bb3fc566b844b44f8b0e57717c1
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-15 16:39:41 -0500
Commit message:

 updated version
 
Package: CoGAPS
Commit: 8075d9d0e03135a954ac4bbca1a476f8160c69d6
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-15 16:38:55 -0500
Commit message:

 display set sizes
 
Package: sevenbridges
Commit: fe977990d5c126f1eb77ac0682275b3666eb0ea1
Author: Nan Xiao <road2stat@gmail.com>
Date: 2018-11-15 16:27:00 -0500
Commit message:

 v1.13.2 release
 
Package: CoGAPS
Commit: a6527328c1e6b7f803833227e99454f03c6f9bbb
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-15 16:12:14 -0500
Commit message:

 updated version & docs
 
Package: CoGAPS
Commit: 44be0cf3ff81f3a7aaaea6b8f4902b51e13fc7b1
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-15 16:07:20 -0500
Commit message:

 use standard allocator by default
 
Package: CoGAPS
Commit: 531471ea0b8ad481a2995a54b24e66c2a8782e5c
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-15 15:14:12 -0500
Commit message:

 updated docs and version
 
Package: CoGAPS
Commit: f56a1a3ce8d2d0549dd3eb033d93034f84b1f081
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-15 15:12:06 -0500
Commit message:

 fix sparse chisq calculation
 
Package: CoGAPS
Commit: cc1ee76398ddc37e54a2c08b0c3afd108e0c6f71
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-15 14:59:48 -0500
Commit message:

 remove unneccesary copy
 
Package: CoGAPS
Commit: b7b756b5638978ef9c856202f60610fb6ca6e4f7
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-14 18:56:03 -0500
Commit message:

 wrap boost
 
Package: CoGAPS
Commit: 8213d5c6e0426fa92919f81fbd6c4c2b1dff8ee9
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-14 14:29:16 -0500
Commit message:

 simpler config
 
Package: HDF5Array
Commit: d222c607fc7948445ceaff07abec11644eeb23bd
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-15 10:55:45 -0800
Commit message:

 More work on h5mread()
 
Package: HDF5Array
Commit: c1060d917a4959b7b5ad6cf7ee46746459f51fe7
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-15 08:41:02 -0800
Commit message:

 Rename simple_h5read() -> h5mread(), and more work on it
 
Package: BiocCheck
Commit: 4b87e213328d338cbd21f697b670121f50dc396a
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2018-11-15 09:38:42 -0500
Commit message:

 Add flags to disable requested checks

  - option to disable existance on CRAN --no-check-CRAN
  - option to disable check if registered on bioconductor mailing list
    and support site  --no-check-bioc-help
 
Package: msPurity
Commit: 8c4b79de980988a12e20a748a93e12ba5eead1f4
Author: tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-11-15 13:38:51 +0000
Commit message:

 spectral matching documentation update
 
Package: msPurity
Commit: 9f6d0b74a7c6605c49f0b521a58755e00bd023a0
Author: Thomas N Lawson <thomas.nigel.lawson@gmail.com>
Date: 2018-11-15 11:35:22 +0000
Commit message:

 update doi links for paper and software 
Package: msPurity
Commit: 0e89bc266af19aac8cbb15c4ff05c27a4b5715b7
Author: Thomas N Lawson <thomas.nigel.lawson@gmail.com>
Date: 2018-11-15 11:28:43 +0000
Commit message:

 Spectral matching documentation update (v1.9.1) (#16)

* updated documentation for spectral matching

* more spectral matching documentation

* purityD averaging update for grouping across multiple lists, also updates for documentation

* removed hardcoding for ppm for groupPeaksEx

* removed hardcoding for ppm for groupPeaksEx

* cleaning up documentation

* removing old readme

* updating readme

* updating readme

* updating readme

* Update readme

* Updating shields

* update readme

* (re)-create travis yaml

* updating travis for codecov

* cleaning up tests

* removed codecov check

* update descript and news with new release

* updated version to match bioconductor

* update links in readme

* update readme

* update readme

* update shield links

* added more shields

* update bioconda reference

* Remove mirror code ref
 
Package: msPurity
Commit: b0e8e6860a793071168782f11dc31b18ee9abf0e
Author: Thomas N Lawson <thomas.nigel.lawson@gmail.com>
Date: 2018-07-17 17:13:17 +0100
Commit message:

 Merge pull request #14 from computational-metabolomics/database_fix

flag remove peaks, frag4feature update, and database fixes 
Package: msPurity
Commit: d6e4481daaa6184aeb71a48c201a3fcab1318ba5
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-17 15:57:27 +0100
Commit message:

 update docs
 
Package: msPurity
Commit: 7eb2b0482a5f52dd6cab9939f66a95cabc46a19f
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-17 15:31:32 +0100
Commit message:

 update generics
 
Package: msPurity
Commit: 13cffe713aad9cce3d2c6f7d36a649aa8eb8c45c
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-17 15:06:44 +0100
Commit message:

 version bump
 
Package: msPurity
Commit: 23ad8d14da5eff3bd08669b3453d3dfdfbb9aa0b
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-17 15:05:57 +0100
Commit message:

 update sqlite database to support new type of f4f
 
Package: msPurity
Commit: 5cbf84621fb07027d1da8dc41d5f83ebc7a1a020
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-17 13:15:11 +0100
Commit message:

 version bump
 
Package: msPurity
Commit: ae24f746768d9ff07b1928aae12cf10ab413bc3f
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-17 13:14:14 +0100
Commit message:

 frag4feature multi-combo
 
Package: msPurity
Commit: ca6d3db90983e882ed6db30a93676e270e74a636
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-17 10:07:55 +0100
Commit message:

 back to release
 
Package: msPurity
Commit: 08a9df9f9107ae2854b8cd5ce93ef23ac628c437
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-17 09:40:03 +0100
Commit message:

 appveyor change vR version
 
Package: msPurity
Commit: 269ba55ba27271c680d4961f8dacdfe712677b9b
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-17 08:58:12 +0100
Commit message:

 sm unit test change
 
Package: msPurity
Commit: e664768ce5058ccd2bb60144e299dc1bba732201
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-16 20:02:10 +0100
Commit message:

 remove test data
 
Package: msPurity
Commit: 0fcd41d3bfa0b4c062bcc7ecdfff0fa6e30affab
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-16 20:01:27 +0100
Commit message:

 added back unitests
 
Package: msPurity
Commit: f78ede712be1c427fedcbb8c91edce75dde6e068
Author: Tomnl <thomas.nigel.lawson@gmail.com>
Date: 2018-07-16 19:08:00 +0100
Commit message:

 update for frag4feature where ms2 and ms1 in different files
 
Package: msPurity
Commit: 68aacf78e63b425480e037788f5395da772bae77
Author: Thomas N Lawson <thomas.nigel.lawson@gmail.com>
Date: 2018-06-14 10:53:36 +0100
Commit message:

 version bump 
Package: msPurity
Commit: 76d52f532cc1cc45269969cf6d4077bc062bf365
Author: Thomas Lawson <thomas.nigel.lawson@gmail.com>
Date: 2018-06-13 16:02:18 +0100
Commit message:

 typo fix
 
Package: msPurity
Commit: 9fdb414173a846025ffe2c3efe4ae9f3a6a063fe
Author: Thomas Lawson <thomas.nigel.lawson@gmail.com>
Date: 2018-06-13 15:58:31 +0100
Commit message:

 removed file
 
Package: msPurity
Commit: 364137edb248463124379f0e59c2673c5a2aea12
Author: Thomas Lawson <thomas.nigel.lawson@gmail.com>
Date: 2018-06-13 15:46:20 +0100
Commit message:

 unit test updates
 
Package: msPurity
Commit: ec46c48b9e8e5f941f0b3c276229202041756adf
Author: Thomas Lawson <thomas.nigel.lawson@gmail.com>
Date: 2018-06-13 11:17:25 +0100
Commit message:

 test that updates
 
Package: msPurity
Commit: 96167cb5d1f3c2bc5d8a15c5862adf5c408eeaa1
Author: Thomas Lawson <thomas.nigel.lawson@gmail.com>
Date: 2018-06-12 18:56:01 +0100
Commit message:

 added flag remove peaks functionality for LC-MS
 
Package: msPurity
Commit: d02e3e57f534cb76294507c13d746155a59f8dff
Author: Thomas Lawson <thomas.nigel.lawson@gmail.com>
Date: 2018-06-11 11:26:36 +0100
Commit message:

 database bug fix
 
Package: HDF5Array
Commit: 5a93be4db499c8f6f81ce7d66b0cf3d80ee979a3
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-14 20:53:57 -0800
Commit message:

 More work on simple_h5read()
 
Package: ChemmineR
Commit: 717eb0cb09962922d106aca103267e337bff33f1
Author: khoran <khoran@cs.ucr.edu>
Date: 2018-11-14 16:43:03 -0800
Commit message:

 added function to fetch pubchem ids from compound names
 
Package: pcaExplorer
Commit: 6ae4d70d065eb00a0165e0b1531093a9734d6e0b
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2018-11-15 00:03:25 +0100
Commit message:

 version 2.9.1 - bumped, edited NEWS, and updated pkgdown static docs
 
Package: pcaExplorer
Commit: b6862015e9441b68111d3ef9dc6529738b22424c
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2018-11-14 23:55:34 +0100
Commit message:

 updated documentation for new params
 
Package: pcaExplorer
Commit: 55879a91d568d565e90c6bcd9ea0b31402d07370
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2018-11-14 23:55:11 +0100
Commit message:

 added possibility to adjust p values - still defaults to FALSE
 
Package: pcaExplorer
Commit: bdd65e6424a9cb184a6ed10283ec52e40a57c117
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2018-11-14 23:53:16 +0100
Commit message:

 implemented the possibility to choose the specific topGO method, on top of the classic algo
 
Package: ChemmineR
Commit: cf48ec91392e34d9d0fc43cb067c16e4b973e710
Author: khoran <khoran@cs.ucr.edu>
Date: 2018-11-14 13:47:42 -0800
Commit message:

 fixed bug in searchSim
 
Package: PureCN
Commit: 99e18eec7b8b6fbf14add0d47832312b56a0436c
Author: lima1 <mriester@gmx.de>
Date: 2018-11-14 14:58:10 -0500
Commit message:

 Updated NEWS
 
Package: PureCN
Commit: 7c0d0230958a51fe6ff829a31d5b5f285676dbb3
Author: Markus Riester <markus.riester@novartis.com>
Date: 2018-11-14 14:40:59 -0500
Commit message:

 Minor documentation updates.
 
Package: PureCN
Commit: bf3eaa8213451afbdd4034790a31d1cf3ba06039
Author: lima1 <mriester@gmx.de>
Date: 2018-11-11 11:40:35 -0500
Commit message:

 Minor documentation updates.
 
Package: multiHiCcompare
Commit: 2ce04a20a9e6288997a9a29f361d7113813ba5f4
Author: jstansfield0 <stansfieldjc@vcu.edu>
Date: 2018-11-14 14:35:42 -0500
Commit message:

 add exportJuicebox
 
Package: multiHiCcompare
Commit: e8a0e48fb8760d2303f504354904a1b50660e5ff
Author: jstansfield0 <stansfieldjc@vcu.edu>
Date: 2018-11-13 15:57:49 -0500
Commit message:

 work on exportJuicerbox
 
Package: openCyto
Commit: 3cfc9d762efab122ad3dd995cacbfe12a74f0987
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-14 10:53:55 -0800
Commit message:

 Merge branch 'trunk' into devel
 
Package: openCyto
Commit: ea2c1bd0546185e790f080bea79b7408e17a5717
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-14 10:53:38 -0800
Commit message:

 bump
 
Package: openCyto
Commit: 67130cd9d9892e7d191fcef349f26f4b37af8269
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-14 10:47:40 -0800
Commit message:

 update path in gating-testSuite
 
Package: openCyto
Commit: 222f135dbfa3ec06c2dd1cab51f77078880579d0
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-14 10:35:48 -0800
Commit message:

 Merge branch 'trunk' of github.com:RGLab/openCyto into trunk
 
Package: openCyto
Commit: d79f31408b06d9f2c99e171d8ce2c2df7de7180e
Author: JACOB WAGNER <jpwagner@fredhutch.org>
Date: 2018-11-14 10:11:09 -0800
Commit message:

 Correct behavior of groupBy in preprocessing to match doc.
 
Package: openCyto
Commit: 3178c37335249f9661fdab74b7c2f3828d5a2a80
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-14 10:35:11 -0800
Commit message:

 Merge branch 'trunk' into devel
 
Package: openCyto
Commit: 330b688cea689e926b509676a0f39d7d13171655
Author: vobencha <vobencha@gmail.com>
Date: 2018-10-30 11:54:32 -0400
Commit message:

 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch
 
Package: openCyto
Commit: 58447b9d8806de7ba1b82f6693a6582b1b5cbdcf
Author: vobencha <vobencha@gmail.com>
Date: 2018-10-30 11:41:52 -0400
Commit message:

 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch
 
Package: openCyto
Commit: 26b062b09db7a68544cd29bd1799a06e8773435f
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-10-11 12:10:00 -0700
Commit message:

 fix the missing params in Rd. #184
 
Package: openCyto
Commit: f9940aff1f468c9b822f3bc410b15845a5354ee6
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-10-11 11:13:37 -0700
Commit message:

 suppress rd for internal functions. #184
 
Package: openCyto
Commit: 63d7141075ea0daab74d692b8a1598425b25ab78
Author: gfinak <greg.finak@gmail.com>
Date: 2018-10-10 15:18:40 -0700
Commit message:

 Add taut string gating code
 
Package: openCyto
Commit: cf95098acbca249e416e7204eacb502652fa4fe4
Author: gfinak <greg.finak@gmail.com>
Date: 2018-07-11 15:51:11 -0700
Commit message:

 Merge branch 'trunk' of github.com:RGLab/openCyto into trunk
 
Package: openCyto
Commit: a526b41cfa29d91c99dfce317d2d863329e78a97
Author: gfinak <greg.finak@gmail.com>
Date: 2018-07-11 15:51:04 -0700
Commit message:

 Add Dockerfile and Makefile for building docker container of opencyto flow tools. Update buildignore
 
Package: openCyto
Commit: b7ba8398c8205a5975ee893d1a456f4f4cb07d59
Author: Greg Finak <greg.finak@gmail.com>
Date: 2018-07-09 15:30:15 -0700
Commit message:

 Update README.md 
Package: openCyto
Commit: db138837ced56bce0f8289c5db74ae9465c1e8e4
Author: gfinak <greg.finak@gmail.com>
Date: 2018-07-09 15:19:28 -0700
Commit message:

 Add a sticker, but Rbuildignore it
 
Package: flowCore
Commit: 5d628f2f7eb3d92c42d0fe18e1b190e112fa50fc
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-14 10:30:14 -0800
Commit message:

 Merge branch 'trunk' into devel
 
Package: flowCore
Commit: 1f271b2c25a54edcc145dd503e61653386b6f5bc
Author: JACOB WAGNER <jpwagner@fredhutch.org>
Date: 2018-11-14 09:34:58 -0800
Commit message:

 write.FCS() quickfix
 
Package: flowCore
Commit: ee1b098093b47b9071f15012b9532c4479e9506b
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-13 21:28:56 -0800
Commit message:

 update test case. #136
 
Package: flowCore
Commit: 4857aa7142823a3ffc3695a49af4cca2cdc8ce66
Author: JACOB WAGNER <jpwagner@fredhutch.org>
Date: 2018-11-13 16:38:19 -0800
Commit message:

 Bump
 
Package: flowCore
Commit: 54b1e0d989ac0c907b65403ce50457258979796f
Author: JACOB WAGNER <jpwagner@fredhutch.org>
Date: 2018-11-13 16:33:01 -0800
Commit message:

 Update write.FCS to handle very large flowFrames
 
Package: SpidermiR
Commit: 8de109155bf06f2a474dda031bb75f72d759feeb
Author: claudia.cava <claudia.cava@ibfm.cnr.it>
Date: 2018-11-14 18:10:51 +0100
Commit message:

 ggg
 
Package: SpidermiR
Commit: d635e988727f1be27eb1444d087bc62d5ff3ebfd
Author: claudia.cava <claudia.cava@ibfm.cnr.it>
Date: 2018-11-14 17:40:17 +0100
Commit message:

 update_release
 
Package: ATACseqQC
Commit: ffc8494c5641851fef7785580dae81315104015b
Author: Jianhong Ou <jianhongou@Jianhongs-MBP.dhe.duke.edu>
Date: 2018-11-14 11:15:50 -0500
Commit message:

 add more documentation for bigFile parameter in readBamFile.R
 
Package: tcgaWGBSData.hg19
Commit: 7fc523af468ee2f8f10bd6ad41ace13f409f09de
Author: Divyagash <sdivyagash@yahoo.com>
Date: 2018-11-14 10:55:45 -0500
Commit message:

 Updated description
 
Package: TCGAutils
Commit: 4476bc0f4a087a44c638a5dd5f7a52629aa1a27d
Author: LiNk-NY <mramos09@gmail.com>
Date: 2018-11-14 10:12:54 -0500
Commit message:

 update vignette to API change
 
Package: OnassisJavaLibs
Commit: 48f6f0563970a9c7ef74f270f0590d6058d5fabc
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2018-11-14 16:21:57 +0100
Commit message:

 Bug fix: added new terms to sample vocabularies
 
Package: OnassisJavaLibs
Commit: 60cced9340c6b9f78e01877f25e9f5370afad5e3
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2018-11-14 16:18:41 +0100
Commit message:

 Modified DESCRIPTION, added external_data_store.txt and sample.do.obo
 
Package: OnassisJavaLibs
Commit: cf06ad7214d680f5d29d8e0611da9bb2675cfb40
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2018-11-14 16:00:28 +0100
Commit message:

 Updated sample.cs.obo and sample.do.obo with new terms
 
Package: OnassisJavaLibs
Commit: 7f49316761deb0497edbac9212a16e4a9e9c37d9
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-06-14 12:42:32 +0200
Commit message:

 New version bump, added new ontology sample
 
Package: OnassisJavaLibs
Commit: 8c138458b6d18c35f7c065fe62ba183128507825
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-06-12 13:46:37 +0200
Commit message:

 Added new sample dictionary
 
Package: OnassisJavaLibs
Commit: ba44111e58fc920c4b9c7aa1c28b01302e1514bb
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-06-09 17:40:03 +0200
Commit message:

 Added new sample ontology for diseases
 
Package: OnassisJavaLibs
Commit: 82d696362364ac4764ef8011f9c152cd13f63d88
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-06-09 14:52:29 +0200
Commit message:

 Changed version to trigger bioconductor build
 
Package: OnassisJavaLibs
Commit: 0b36fd774e8786fbb9a2175177a02ffefbae4299
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-06-01 09:53:52 +0200
Commit message:

 Updated DESCRIPTION file and Vignete
 
Package: OnassisJavaLibs
Commit: e4cb253f8f31f993104c3326752a66e927c68f93
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-31 17:09:12 +0200
Commit message:

 Update version to trigger biocondutor
 
Package: OnassisJavaLibs
Commit: eb3682f2c19c3f7f6915da77b4de668dc6d0f631
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-31 15:29:50 +0200
Commit message:

 Changed the title of a section of the vignete
 
Package: OnassisJavaLibs
Commit: f40d7665303685af7f92ee85ec9b8f14f2dd4d40
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-31 15:27:03 +0200
Commit message:

 Removed Rproj file
 
Package: OnassisJavaLibs
Commit: 9f67e417cedb8b359dece11a3b52d5f8c6cbb388
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-31 15:26:03 +0200
Commit message:

 Removed R history file
 
Package: OnassisJavaLibs
Commit: 0f4b196d031c2f36746eac9cbaaa5df416224efe
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-31 15:20:19 +0200
Commit message:

 removed .Rproj.user directory
 
Package: OnassisJavaLibs
Commit: c2b83569c53711eefcbbaa3125170b6540521862
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-31 14:59:43 +0200
Commit message:

 Removed some imports from the vignette
 
Package: OnassisJavaLibs
Commit: aed5d3a171b6a1bed7e570beb4968f400c99ec6f
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-31 12:48:52 +0200
Commit message:

 Added sample obo ontology
 
Package: OnassisJavaLibs
Commit: 0ea6042e65ce16e3f40da54abe306cbb3b65061c
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-31 12:47:28 +0200
Commit message:

 Added a short vignette explaining the contents of the package
 
Package: OnassisJavaLibs
Commit: 8f8f54b0762504a5965dbaee403c6bb9df7b473c
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-31 12:46:15 +0200
Commit message:

 Added a short vignette explaining the contents of the package
 
Package: OnassisJavaLibs
Commit: 35a344431bb75c3080997b76e8d231f02cdd61b7
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-30 14:51:44 +0200
Commit message:

 Merge branch 'master' of https://github.com/eugeniaeueu/OnassisJavaLibs
 
Package: OnassisJavaLibs
Commit: f69686d2744fd74c14d0ae63e46e090eb779e9b4
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-30 14:51:30 +0200
Commit message:

 changed version to trigger webhook
 
Package: OnassisJavaLibs
Commit: 8366f9e2c937073d531d253bd89de147fa28326a
Author: Eugenia <eugenia.galeota@gmail.com>
Date: 2017-05-30 14:50:31 +0200
Commit message:

 Create README.md 
Package: OnassisJavaLibs
Commit: 5b51daa37ad694cd8106f7179acc72e1d251471e
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-30 14:45:28 +0200
Commit message:

 OnassisJavaLibs
 
Package: OnassisJavaLibs
Commit: f3dbb59b18ff3a461830fc8a96e2ad38b66a9001
Author: egaleota <eugenia.galeota@ieo.eu>
Date: 2017-05-30 12:32:17 +0200
Commit message:

 First commit
 
Package: ORFik
Commit: 12166d3e3b43df538c0ba2912661c2bfdd6a33d0
Author: JokingHero <kornellabun@gmail.com>
Date: 2018-11-14 16:01:53 +0100
Commit message:

 fix merge conflict
 
Package: ORFik
Commit: a73318d703939177a108fd6348af5e680a427fb8
Author: Håkon Tjeldnes <hauken_heyken@hotmail.com>
Date: 2018-11-14 15:58:10 +0100
Commit message:

 make 3.9 work, changed lengths function call (#62)

 
Package: Cardinal
Commit: 64f956e9aabce084f0dde6e2d50ec181d38121c9
Author: kuwisdelu <k.bemis@northeastern.edu>
Date: 2018-11-14 09:10:43 -0500
Commit message:

 clean up merge conflict
 
Package: Cardinal
Commit: cfd3c5c4051d41a480c892e79d2a0504b5120d53
Author: kuwisdelu <k.bemis@northeastern.edu>
Date: 2018-11-14 09:03:37 -0500
Commit message:

 fix merge w/ release 3.8 patch 2.0.1
 
Package: Cardinal
Commit: c71e2fa1721249cec407547a355c748e1ca0f599
Author: kuwisdelu <k.bemis@northeastern.edu>
Date: 2018-11-14 09:00:20 -0500
Commit message:

 v2.0.1 check for old peakFilter() behavior
 
Package: qPLEXdata
Commit: 7a1c1ebf2254b47d720c21514de060ef9eeadcbf
Author: Ash Sawle <Ashley.Sawle@cruk.cam.ac.uk>
Date: 2018-11-14 12:42:54 +0000
Commit message:

 Fixed version to match upstream master
 
Package: qPLEXdata
Commit: c03477249210caabf33640dd36b801183e0cca43
Author: Ash Sawle <Ashley.Sawle@cruk.cam.ac.uk>
Date: 2018-11-14 12:41:05 +0000
Commit message:

 NEWS and DESCRIPTION for latest version
 
Package: qPLEXdata
Commit: 39e58c2b822154cc1b3589bc2e90173f14b5613b
Author: kamalfartiyal84 <kamal.fartiyal84@gmail.com>
Date: 2018-11-14 12:33:39 +0000
Commit message:

 fixed vignette rename function error 
Package: qPLEXdata
Commit: 61f6c345df1975366fe11e7b5c8332e825153b76
Author: Ash Sawle <Ashley.Sawle@cruk.cam.ac.uk>
Date: 2018-11-14 12:11:25 +0000
Commit message:

 Version 1.1.1
 
Package: qPLEXdata
Commit: 67d90d318c1640e4a388de3a09ff3d5158498ca9
Author: Ash Sawle <Ashley.Sawle@cruk.cam.ac.uk>
Date: 2018-11-14 12:09:30 +0000
Commit message:

 Add 0.99.2 changes
 
Package: qPLEXdata
Commit: 0839696799575a7184ff53ec9f9465cfe05eff62
Author: kamalfartiyal84 <kamal.fartiyal84@gmail.com>
Date: 2018-11-14 11:58:36 +0000
Commit message:

 commenting error code in vignette 
Package: qPLEXdata
Commit: 72e319ebc62386f5fbbdbad2201234b245eeb2ee
Author: kamalfartiyal84 <kamal.fartiyal84@gmail.com>
Date: 2018-07-11 12:36:03 +0100
Commit message:

 version bump 
Package: qPLEXdata
Commit: 0998e4266528a457784e6c917aacdd0a808744df
Author: kamalfartiyal84 <kamal.fartiyal84@gmail.com>
Date: 2018-07-11 12:35:21 +0100
Commit message:

 Added human_anno 
Package: HDF5Array
Commit: a675e33c661e58e521e837ef3cb96730893f73c9
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-14 04:05:53 -0800
Commit message:

 Start working on simple_h5read()
 
Package: SpidermiR
Commit: e384106ef8c3adc6ae08367b50591c9868ecc4db
Author: claudia.cava <claudia.cava@ibfm.cnr.it>
Date: 2018-11-14 13:02:47 +0100
Commit message:

 update2_november2018
 
Package: SpidermiR
Commit: b32e93276fd547d0d78d14dfbc5e896a5e0c73c3
Author: claudia.cava <claudia.cava@ibfm.cnr.it>
Date: 2018-11-14 09:54:39 +0100
Commit message:

 update devel_november_2018
 
Package: Prostar
Commit: 86800d254032066915ae919b0049247c8396fa65
Author: Samuel Wieczorek <samuel.wieczorek@cea.fr>
Date: 2018-11-14 10:41:32 +0100
Commit message:

 update sessionInfo in doc
 
Package: MSnbase
Commit: 62f348ffe8f126d212bf00c175044111b82ce908
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2018-11-14 10:34:13 +0100
Commit message:

 update news
 
Package: MSnbase
Commit: d72ceb78e4e5e5bf903469c0afdcb97d383aef9f
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2018-11-14 10:33:00 +0100
Commit message:

 fix regression bug in plot spectrum1
 
Package: MSnbase
Commit: fd1e4a74f96e17b7445133334ff2282da522f8e7
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2018-11-12 21:17:57 +0100
Commit message:

 Fix failing test and add impute(method = "none") test
 
Package: MSnbase
Commit: 12c0ba445467db4660ce7d68e4b865b8fd0f268b
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2018-11-12 18:06:08 +0100
Commit message:

 add none imputation method
 
Package: MSnbase
Commit: c5c7a9cd553b4c55945bcd0822c470534925b8a2
Author: Laurent Gatto <laurent.gatto@gmail.com>
Date: 2018-11-09 09:52:17 +0100
Commit message:

 Merge pull request #378 from lgatto/spectra_methods

Add some more Spectra methods 
Package: MSnbase
Commit: f889296c2ed219867d52e77cdff77adfe00e0a97
Author: jotsetung <johannes.rainer@gmail.com>
Date: 2018-11-07 08:45:04 +0100
Commit message:

 Add filterMsLevel,Spectra and coerce,Spectra,MSnExp

- Add filterMsLevel,Spectra method.
- Add coerce,Spectra,MSnExp method (issue #370).
- Add related unit tests and documentation.
 
Package: MSnbase
Commit: 9ea2c4a17179eed906516731004d3f3c91001db2
Author: jotsetung <johannes.rainer@gmail.com>
Date: 2018-11-07 07:33:21 +0100
Commit message:

 Add clean,Chromatograms (issue #354)
 
Package: MSnbase
Commit: 24a14f02bd409931e1712272f94c17d9c1e99dad
Author: jotsetung <johannes.rainer@gmail.com>
Date: 2018-11-06 10:48:29 +0100
Commit message:

 Merge branch 'master' into spectra_methods
 
Package: MSnbase
Commit: 367b26fd8f381292b9806350b8f3e24317be42e1
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2018-11-05 18:57:34 +0100
Commit message:

 Merge pull request #376 from lgatto/editorconfig

Add .editorconfig 
Package: MSnbase
Commit: 2bf77a992c857085ee6714b666d74ebd75275ddf
Author: jotsetung <johannes.rainer@gmail.com>
Date: 2018-11-05 09:59:24 +0100
Commit message:

 Merge branch 'master' into spectra_methods
 
Package: MSnbase
Commit: aba0db15719850feebdab09338c0e510b2630e06
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2018-11-03 22:32:03 +0100
Commit message:

 Add .editorconfig
 
Package: MSnbase
Commit: 3f0552117a177cbec81ac80831ef4aa9a41a03bd
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2018-11-03 22:33:17 +0100
Commit message:

 Install pkg before running pkgdown::build_site()
 
Package: MSnbase
Commit: 72873ed91c0404168c312eb34d256786f9d2d0a4
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2018-10-30 19:07:16 +0100
Commit message:

 remove and ignore docs directory

Now using gh-pages for the automatically pkgdown build and deployment
- see 368 for details.
 
Package: MSnbase
Commit: eeec7e0013e30e532d06210d0b843207d9f1060b
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2018-10-30 19:00:21 +0100
Commit message:

 new devel version
 
Package: MSnbase
Commit: f9857d8115d5f113bca132ed3517b544e72c7352
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2018-10-30 18:58:30 +0100
Commit message:

 Merge branch 'devel'
 
Package: MSnbase
Commit: 71aa9620800a48052a27ef4c630c901581a66dd7
Author: jotsetung <johannes.rainer@gmail.com>
Date: 2018-10-26 16:45:34 +0200
Commit message:

 Add as,MSnExp,Spectra and as,Spectra,list #370
 
Package: MSnbase
Commit: 331f08ea70d8b0a02ec2a3b57885dda8b921187e
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2018-10-26 14:43:38 +0200
Commit message:

 update pkgdown
 
Package: ComplexHeatmap
Commit: 97e2d1194b0c09dc33add106aa2ffa85537efb60
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-14 09:50:35 +0100
Commit message:

 changes in vignette
 
Package: ComplexHeatmap
Commit: f8d72106b4374e82fe6426cda0c24b6a806fb9eb
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-14 09:27:08 +0100
Commit message:

 forgot to add drop = FALSE in matrix subsetting
 
Package: ComplexHeatmap
Commit: 0e4c9978b3305b3125019fe7eac1020cf0df6596
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-13 11:20:17 +0100
Commit message:

 text annotation with correct width
 
Package: ComplexHeatmap
Commit: a4788e64785e9120c7d53f1583df37c8623c141d
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-12 13:56:10 +0100
Commit message:

 remove unique()
 
Package: DAPAR
Commit: cd1b99c8c491a0928a2aab5469f16db4c86dad79
Author: Samuel Wieczorek <samuel.wieczorek@cea.fr>
Date: 2018-11-14 08:34:45 +0100
Commit message:

 New master version
 
Package: DAPAR
Commit: b712b10613eb2f1c7f186587781077f8945424a1
Author: Samuel Wieczorek <samuel.wieczorek@cea.fr>
Date: 2018-11-05 08:53:53 +0100
Commit message:

 Merge branch 'chantier'
 
Package: DAPAR
Commit: 6499981fc68eadc216db36bf3d6110e2c8b74f24
Author: Samuel Wieczorek <samuel.wieczorek@cea.fr>
Date: 2018-11-01 04:53:28 +0100
Commit message:

 test
 
Package: Prostar
Commit: bd1a50c5defda0dae8b856a39dba40a73c30bb6f
Author: Samuel Wieczorek <samuel.wieczorek@cea.fr>
Date: 2018-11-14 08:19:02 +0100
Commit message:

 New master
 
Package: Prostar
Commit: 8cdaec1b2daf221ef560c4bc2756c6640996dfb7
Author: Samuel Wieczorek <samuel.wieczorek@cea.fr>
Date: 2018-11-14 08:18:01 +0100
Commit message:

 New master
 
Package: Prostar
Commit: af9c629d87e4d8b7d5a74a1138225f02cdf8251f
Author: Samuel Wieczorek <samuel.wieczorek@cea.fr>
Date: 2018-11-14 08:07:09 +0100
Commit message:

 update in filtering
 
Package: S4Vectors
Commit: 48e11dd2c8d474c63e09a69ee7d2d2ec35d7307a
Author: Hervé Pagès <hpages@fredhutch.org>
Date: 2018-11-13 16:58:09 -0800
Commit message:

 Small improvement to "coerce2" method for DataFrame objects
 
Package: TCGAutils
Commit: e68bc97cb3219654682ad6b09d4e0eb4a11d0302
Author: LiNk-NY <mramos09@gmail.com>
Date: 2018-11-13 18:37:45 -0500
Commit message:

 fix ID translation function
 
Package: TCGAutils
Commit: 8b5ff4499839c22a9aeb83bd1c2d409c07f0787f
Author: LiNk-NY <mramos09@gmail.com>
Date: 2018-11-13 18:35:51 -0500
Commit message:

 use formal expand args
 
Package: TCGAutils
Commit: 4419f59fb42a42f93001af69f65f4113164bbf58
Author: LiNk-NY <mramos09@gmail.com>
Date: 2018-11-13 16:33:32 -0500
Commit message:

 use switch function for conditional expanding

- account for cases and samples sep.
- add more tests
 
Package: TCGAutils
Commit: 627d831cbf9b24e9f0b87b9b651876088a20a18b
Author: LiNk-NY <mramos09@gmail.com>
Date: 2018-11-13 11:29:02 -0500
Commit message:

 wip: ID translation with unit tests
 
Package: TCGAutils
Commit: d64f8c1d2ecea0ff97977b497f656db71b76f61e
Author: LiNk-NY <mramos09@gmail.com>
Date: 2018-11-09 18:38:05 -0500
Commit message:

 more tests!
 
Package: TCGAutils
Commit: 0d673cb1cb520702766bdc6bfe6b93930bc71463
Author: LiNk-NY <mramos09@gmail.com>
Date: 2018-11-08 17:40:13 -0500
Commit message:

 add unit tests for translation
 
Package: TCGAutils
Commit: 1c054470515e179856e6a9f6ecc654cff44eaf8a
Author: LiNk-NY <mramos09@gmail.com>
Date: 2018-11-08 17:39:53 -0500
Commit message:

 fix issue with expander overwrite and use match to select rows
 
Package: TCGAutils
Commit: 33f7a969c1c84141d1f3d762188512f8191bb864
Author: LiNk-NY <mramos09@gmail.com>
Date: 2018-11-08 17:38:15 -0500
Commit message:

 rename resultFrame to rframe
 
Package: TCGAutils
Commit: 171a0fb6d7023be4701937f16950ba527371bdf9
Author: LiNk-NY <mramos09@gmail.com>
Date: 2018-11-07 22:07:17 -0500
Commit message:

 support full TCGA barcode to UUID translation
 
Package: TCGAutils
Commit: 20b51752905b555eb93940944ffd421c6c572d1b
Author: LiNk-NY <mramos09@gmail.com>
Date: 2018-11-07 16:26:54 -0500
Commit message:

 wip: barcode auto recognition and translation
 
Package: flowWorkspace
Commit: 8e671f1eb83387b51509a5fa9ab1082f8408ef8f
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-13 13:22:22 -0800
Commit message:

 merge trunk
 
Package: flowWorkspace
Commit: aa901b7fa4cf42924fa16baec59497e453ce131a
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-05 11:35:15 -0800
Commit message:

 bump
 
Package: flowWorkspace
Commit: 5e4ebdf92273a35921d7671d110e0d5e7252e4d1
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-05 11:30:23 -0800
Commit message:

 update doc
 
Package: flowWorkspace
Commit: cc92840a6e59fd78c7e61984e83c46eec8d9a7f6
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-05 10:53:48 -0800
Commit message:

 add swap_cols argument to .addGatingHierarchies
 
Package: flowWorkspace
Commit: 436d2fbe9afe60438a9f63ea02ea72c278ed67e9
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-01 16:16:14 -0700
Commit message:

 handle external trans in addGatingHierarchies
 
Package: flowWorkspace
Commit: c1c6bcd143b8167c26f1d31665f66caec8998e6e
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-01 13:34:48 -0700
Commit message:

 hanle external comp properly
 
Package: flowWorkspace
Commit: c927c568aed00d5890d312733591e62da28ad903
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-01 13:30:08 -0700
Commit message:

 bump
 
Package: flowWorkspace
Commit: 605dd08d91aa4aae91dda755a6a4efd9f0435875
Author: vobencha <vobencha@gmail.com>
Date: 2018-10-30 11:54:29 -0400
Commit message:

 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch
 
Package: flowWorkspace
Commit: 5040d3f20bab81a2ed5bfe0c3837496b162e277c
Author: vobencha <vobencha@gmail.com>
Date: 2018-10-30 11:41:47 -0400
Commit message:

 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch
 
Package: flowWorkspace
Commit: 8a4b90066c2ef5cfba59298fefeabd3f6af1a24e
Author: mikejiang <wjiang2@fhcrc.org>
Date: 2018-11-01 13:27:45 -0700
Commit message:

 pass external compensation to GatingSet method for template cp
 
Package: tximport
Commit: 35597d4dff00ade0ec78796fe2f303f7a9771346
Author: mikelove <michaelisaiahlove@gmail.com>
Date: 2018-11-13 15:11:50 -0500
Commit message:

 Merge branch 'master' of git.bioconductor.org:packages/tximport
 
Package: tximport
Commit: 5922cab8781bb87de35357e9f0fe090ec969b5ea
Author: mikelove <michaelisaiahlove@gmail.com>
Date: 2018-11-13 15:11:48 -0500
Commit message:

 alevin work
 
Package: CoGAPS
Commit: 7be9ceaec7d1675d1f39108173339bafbdb1ba7e
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-13 14:47:40 -0500
Commit message:

 updated docs
 
Package: CoGAPS
Commit: 1bba217beea170d642de99253471c280abfeba30
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-13 14:46:27 -0500
Commit message:

 print working properly inside BiocParallel
 
Package: CEMiTool
Commit: 6a3cfe9c19fcbf4ce288e36612a5eccd5715b5b9
Author: pedrostrusso <pedrostrusso@gmail.com>
Date: 2018-11-13 17:28:19 -0200
Commit message:

 Fixing filter bug, updating docs, removing qq functions
 
Package: CEMiTool
Commit: c2b0a75b210fd5c45b157505e15cef2447beaac0
Author: pedrostrusso <pedrostrusso@gmail.com>
Date: 2018-11-13 13:23:13 -0200
Commit message:

 Fixing conflict
 
Package: CEMiTool
Commit: c5c1a9b6bbe0b35aedd5959958fe609df697b4e1
Author: pedrostrusso <pedrostrusso@gmail.com>
Date: 2018-11-13 13:21:04 -0200
Commit message:

 Updating examples
 
Package: CEMiTool
Commit: 7e69c169bd87b2dd36d527e60f9f75145c741c63
Author: pedrostrusso <pedrostrusso@gmail.com>
Date: 2018-11-06 14:35:40 -0200
Commit message:

 updating get_hubs function
 
Package: CEMiTool
Commit: 5ab4f9d60d0c6e889fce7804c5059ecb39822ac0
Author: pedrostrusso <pedrostrusso@gmail.com>
Date: 2018-11-05 13:25:59 -0200
Commit message:

 Updating release DESCRIPTION version
 
Package: CEMiTool
Commit: 5bffd67e665c158baed4d0c5495144c6d611004c
Author: pedrostrusso <pedrostrusso@gmail.com>
Date: 2018-11-05 12:04:43 -0200
Commit message:

 Updating RELEASE version
 
Package: CEMiTool
Commit: 9b6e046fba2badc350111c9534504ec05b257c91
Author: pedrostrusso <pedrostrusso@gmail.com>
Date: 2018-10-30 10:49:29 -0300
Commit message:

 Version bump for new release
 
Package: HIBAG
Commit: b38a8a39a9126faddd8a1f87e40c1176b788e581
Author: Xiuwen Zheng <zhengxwen@gmail.com>
Date: 2018-11-13 10:38:47 -0600
Commit message:

 change author's email address
 
Package: rGREAT
Commit: 67ebe94c22adefa062b8b855ae994e0c3c73103b
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-13 16:48:44 +0100
Commit message:

 merge
 
Package: rGREAT
Commit: a46305c27dce4795e2b3381586001267f3c082fb
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-13 16:47:39 +0100
Commit message:

 par(mfrow) is corrected
 
Package: rGREAT
Commit: 3a13668036c8810ff1e2b09bd8349f5a56260c80
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-18 13:54:49 +0200
Commit message:

 merge
 
Package: rGREAT
Commit: 6a157f2bf51aab797dac30985b9ab7c53f59ff8b
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-18 13:53:05 +0200
Commit message:

 parse error message from GREAT
 
Package: M3C
Commit: 298eacb0c50c6c1b6b23e52f52b1e71c8849e145
Author: crj32 <chris.r.john86@gmail.com>
Date: 2018-11-13 15:05:15 +0000
Commit message:

 minor alterations
 
Package: tximportData
Commit: f28b017bb0126f98a69248d95445e0670c71dec7
Author: mikelove <michaelisaiahlove@gmail.com>
Date: 2018-11-13 10:02:58 -0500
Commit message:

 bump version
 
Package: PGPC
Commit: 8db467588b82526b98c092c83479570b2316cbb8
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2018-11-13 09:54:54 -0500
Commit message:

 Package deprecation

  - added status tag in description
 
Package: PepsNMR
Commit: c9a0cbdb32359cf1bea5b512cf4fd2ff77fa12c2
Author: ManonMartin <manon.martin@uclouvain.be>
Date: 2018-11-13 14:58:38 +0100
Commit message:

 correct version numbering
 
Package: PepsNMR
Commit: c5870c280c391ce257fa9de52761ff0d0cdd271a
Author: vobencha <vobencha@gmail.com>
Date: 2018-10-30 11:54:40 -0400
Commit message:

 updated version numbering
 
Package: PepsNMR
Commit: bd398ce150cda6be820667976d4635d9a7384db6
Author: ManonMartin <manon.martin@uclouvain.be>
Date: 2018-11-13 14:35:16 +0100
Commit message:

 updated version
 
Package: PepsNMR
Commit: f52da8c96dbfa198ffc040eba75ed4e070009f65
Author: ManonMartin <manon.martin@uclouvain.be>
Date: 2018-11-13 13:05:04 +0100
Commit message:

 Modified the package citation
 
Package: ACE
Commit: fc7d88ffadf7eb065f4f98a3cec466a0b4b02a9c
Author: jpoell <j.poell@vumc.nl>
Date: 2018-11-13 14:09:21 +0100
Commit message:

 forcesegmentsontemplate added
 
Package: bayNorm
Commit: d2d30e4d9fe283633ae9103657c9c088ef1692d7
Author: WENHAO TANG <wt215@ic.ac.uk>
Date: 2018-11-13 12:16:20 +0000
Commit message:

 Let local master to be devel branch: 1.1.3
 
Package: bayNorm
Commit: aaed4bbca570d38c87313671638339ac0ea87fb7
Author: WENHAO TANG <wt215@ic.ac.uk>
Date: 2018-11-13 10:50:55 +0000
Commit message:

 1.0.5 fix for non UMI data
 
Package: bayNorm
Commit: ab036b6f3e0e52df3de2954bc8ddccc36b667ce8
Author: WENHAO TANG <wt215@ic.ac.uk>
Date: 2018-11-12 17:43:56 +0000
Commit message:

 1.0.4 resubmit
 
Package: bayNorm
Commit: fa8a11266b406883e36cf811a4001365e3de466d
Author: WENHAO TANG <wt215@ic.ac.uk>
Date: 2018-11-12 17:41:11 +0000
Commit message:

 Merge remote-tracking branch 'origin/RELEASE_3_8'

Currently local master:1.1.2, local RELEASE_3_8: 1.0.4
I want to set local master to be 1.0.4.
 
Package: bayNorm
Commit: 15c02fdf6a397baf65ad52871b558c25e422f64f
Author: WENHAO TANG <wt215@ic.ac.uk>
Date: 2018-11-12 17:14:25 +0000
Commit message:

 Merge remote-tracking branch 'origin/master' into RELEASE_3_8

Update RELEASE_3_8 with 1.0.4, to be consistent with master branch.
 
Package: bayNorm
Commit: aa8842f91f736dfcc6ec1d59e2c490d5d9117c2a
Author: WENHAO TANG <wt215@ic.ac.uk>
Date: 2018-11-11 18:06:24 +0000
Commit message:

 Merge branch 'master' into RELEASE_3_8

They are all identical (master and RELEASE_3_8), hence I merged them.
 
Package: bayNorm
Commit: e1facac87994a08c622c767646d7839837785ce5
Author: WENHAO TANG <wt215@ic.ac.uk>
Date: 2018-11-11 17:53:28 +0000
Commit message:

 1.0.2: Correct description file
 
Package: bayNorm
Commit: ead59d29ff65eb9eca7b1aa4dc49c12db1f60190
Author: WENHAO TANG <wt215@ic.ac.uk>
Date: 2018-11-11 06:21:06 +0800
Commit message:

 1.0.2
 
Package: scran
Commit: 90047ded872aa6cc386ac8a990878cfe4e5279e3
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-13 11:22:38 +0000
Commit message:

 Bumped version, date, updated NEWS.
 
Package: scran
Commit: f7cf2ab357b7f9f9135cb22e755ffe07663e598a
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-13 11:21:45 +0000
Commit message:

 Modified default choice of ref.clust in computeSumFactors.
 
Package: simpleSingleCell
Commit: 804276e22065b5af740c3c822ba7a7c70b459aa8
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-13 11:55:53 +0000
Commit message:

 Minor changes to cluster IDs for new quickCluster.
 
Package: metaMS
Commit: 59601c76498ff6e5dc565ca04016646695eab408
Author: Ron Wehrens <ron.wehrens@gmail.com>
Date: 2018-11-13 12:25:11 +0100
Commit message:

 title case in DESCRIPTION
 
Package: metaMS
Commit: 95f2762393ce4d8af3c7970f75318e28a127aaa9
Author: Ron Wehrens <ron.wehrens@gmail.com>
Date: 2018-11-13 11:11:07 +0100
Commit message:

 added travis option
 
Package: ensembldb
Commit: 734bd0c87d10e59c5ba1b312ddbe95056e4fe140
Author: jotsetung <johannes.rainer@gmail.com>
Date: 2018-11-13 10:30:36 +0100
Commit message:

 Add coordinate mapping use-case vignette
 
Package: Prostar
Commit: 301bd15bf2613ea84bab45fcc24701f0305dcea1
Author: Samuel Wieczorek <samuel.wieczorek@cea.fr>
Date: 2018-11-13 10:27:44 +0100
Commit message:

 slideshow
 
Package: alsace
Commit: 3273f7651cc1b825ae01c84ee417f44ee5655a28
Author: Ron Wehrens <ron.wehrens@gmail.com>
Date: 2018-11-13 09:55:00 +0100
Commit message:

 removed separator line from DESCRIPTION
 
Package: alsace
Commit: 32ae8cd884d8deb469fa2dd3fd26d594873d1bea
Author: Ron Wehrens <ron.wehrens@gmail.com>
Date: 2018-11-13 09:44:20 +0100
Commit message:

 added travis yml
 
Package: metaMS
Commit: c756d9b65c814e8ee898304c465125a6603bb828
Author: Ron Wehrens <ron.wehrens@gmail.com>
Date: 2018-11-13 09:41:47 +0100
Commit message:

 added travis
 
Package: metaMS
Commit: 5dbb7f37701b584fc51d462c6829e85e82375af6
Author: Ron Wehrens <ron.wehrens@gmail.com>
Date: 2018-11-13 09:36:42 +0100
Commit message:

 added travis
 
Package: alsace
Commit: eeb01d4e9cd841761c702f016c1163fe78606e7f
Author: Ron Wehrens <ron.wehrens@gmail.com>
Date: 2018-11-13 09:33:49 +0100
Commit message:

 added travis
 
Package: S4Vectors
Commit: 606a89b0cf7e3638b0b8f635a49726f90307f65f
Author: Michael Lawrence <lawremi@gmail.com>
Date: 2018-11-12 08:09:08 -0800
Commit message:

 Merge pull request #25 from DarioS/master

Added as.Pairs function 
Package: S4Vectors
Commit: 8698fd3378332443d24e35a92e08127fd2efa2dc
Author: Dario Strbenac <dstr7320@uni.sydney.edu.au>
Date: 2018-11-12 12:28:22 +1100
Commit message:

 Use of setAs for coercion.
 
Package: S4Vectors
Commit: ff6a484c804fc2c95f3a1b8a891933f3b46e9bc4
Author: Dario Strbenac <dstr7320@uni.sydney.edu.au>
Date: 2018-11-12 12:26:20 +1100
Commit message:

 Use of setAs for coercion.
 
Package: S4Vectors
Commit: 4beac1ebc5bfec1dc74266746a4a2401e520efca
Author: DarioS <dario.strbenac@sydney.edu.au>
Date: 2018-11-11 16:09:14 +1100
Commit message:

 Added as.Pairs function.
 
Package: metagenomeFeatures
Commit: 3d71842d9940bfe1e9643f206b7a5e3ef4ed9db6
Author: Nate Olson <nolson@nist.gov>
Date: 2018-11-12 20:47:26 -0500
Commit message:

 fixed bioc merge conflict

Merge branch 'master' of git.bioconductor.org:packages/metagenomeFeatures

# Conflicts:
#	DESCRIPTION
 
Package: metagenomeFeatures
Commit: 927de67a9328c3d2315be0da4d6c38b04062556b
Author: Nate Olson <nolson@nist.gov>
Date: 2018-11-12 20:22:56 -0500
Commit message:

 edits
 
Package: metagenomeFeatures
Commit: ce421924aa8933440c7a1c64da92762d7ceb070a
Author: Nate Olson <nolson@nist.gov>
Date: 2018-11-12 20:22:07 -0500
Commit message:

 cleaning up namespace and documentation
 
Package: metagenomeFeatures
Commit: 46afb4a35bd1d6a925e3d4d4033b3143665b581e
Author: Nate Olson <nolson@nist.gov>
Date: 2018-11-12 16:17:51 -0500
Commit message:

 bumping version #
 
Package: metagenomeFeatures
Commit: 2e9c84ac4b004e67b9d210b160d564c86a34acae
Author: Nate Olson <nolson@nist.gov>
Date: 2018-11-12 16:17:31 -0500
Commit message:

 fixing namespace issues
 
Package: metagenomeFeatures
Commit: 54ea6ca4a8f5703337c59324799750ddcfa59506
Author: Nate Olson <nolson@nist.gov>
Date: 2018-11-12 11:35:20 -0500
Commit message:

 Nidhi's edits
 
Package: metagenomeFeatures
Commit: 8322e5da320fef00b415711b053105f04dc3f28c
Author: Nate Olson <nolson@nist.gov>
Date: 2018-11-10 09:36:16 -0500
Commit message:

 text revisions
 
Package: metagenomeFeatures
Commit: 74eae14c8bfedca58a23a03e5bee2f9bad2fcf21
Author: Nate Olson <nolson@nist.gov>
Date: 2018-11-09 19:16:30 -0500
Commit message:

 renamed files
 
Package: metagenomeFeatures
Commit: fe6ce4e8c489ff3474276e3b58db4e58ec328dee
Author: Nate Olson <nolson@nist.gov>
Date: 2018-11-08 16:35:19 -0500
Commit message:

 revised text
 
Package: metagenomeFeatures
Commit: eca79b25076f886b9fe6c61b2fbe193c0a25c6ec
Author: Nate Olson <nolson@nist.gov>
Date: 2018-11-07 05:25:10 -0500
Commit message:

 combined database version
 
Package: metagenomeFeatures
Commit: 1d68e59496f2d420b8e3349386d57d26ce0c5331
Author: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Date: 2018-10-18 11:14:35 -0400
Commit message:

 remove library call in block
 
Package: metagenomeFeatures
Commit: 3c416d5eb03699dec5d55a2c78c1fbbff39e5514
Author: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Date: 2018-10-18 11:11:53 -0400
Commit message:

 fix vignette missing block
 
Package: metagenomeFeatures
Commit: 5917badeca9cc3433b08d332cbc4d4e6cf228c31
Author: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Date: 2018-10-18 10:53:01 -0400
Commit message:

 update vignette dependencies
 
Package: metagenomeFeatures
Commit: 00ceb13649722cb10acca2ebdf08653936710415
Author: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Date: 2018-10-18 10:32:00 -0400
Commit message:

 Merge branch 'master' of http://github.com/hcbravolab/metagenomeFeatures
 
Package: metagenomeFeatures
Commit: 52efce516399d996596a46832ffcc82e9050cf26
Author: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Date: 2018-10-18 10:29:44 -0400
Commit message:

 update imports, documentation
 
Package: metagenomeFeatures
Commit: 18a274a06d35e49472d87d49f6e76f118a335c5d
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-11 06:02:10 -0400
Commit message:

 fixed warning roxygen warning message
 
Package: metagenomeFeatures
Commit: a3add00a40c04b72790feda1f038efd1ae2b1af9
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-11 05:57:55 -0400
Commit message:

 fixed ids issue
 
Package: metagenomeFeatures
Commit: 9329311f2d441c28fa2649a7ed3ffda092523c48
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-10 05:32:44 -0400
Commit message:

 fixing merge conficts

Merge branch 'vignette-revision'

# Conflicts:
#	vignettes/Exploring_a_MgDb.Rmd
#	vignettes/database-explore.Rmd
#	vignettes/retrieve-feature-data.Rmd
 
Package: metagenomeFeatures
Commit: 9a74f1adfee7f43a068cf535b5f7d90482b10b12
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-09 06:11:21 -0400
Commit message:

 revised text
 
Package: metagenomeFeatures
Commit: 298d515d4ed28abd3f9f93344a7157b9e7695fb1
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-09 05:32:21 -0400
Commit message:

 fixed typo
 
Package: metagenomeFeatures
Commit: 011ab7e73b71167e1ef622e3412793d574cddb60
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-09 05:31:40 -0400
Commit message:

 revised text
 
Package: metagenomeFeatures
Commit: 11af6b823ac4a30e7654f7566d12394b331b0cb1
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-07 05:57:07 -0400
Commit message:

 revise text
 
Package: metagenomeFeatures
Commit: 7c00de6c21e7358a1848f220359e213729aa2475
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-06 05:45:48 -0400
Commit message:

 text revisions
 
Package: metagenomeFeatures
Commit: 82d10bee8097f8b38299e31b6c9c8ca413647746
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-05 05:58:12 -0400
Commit message:

 rebuilt documentation
 
Package: metagenomeFeatures
Commit: 82abbe5fccdedaa35c41ba0ece287be403f55675
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-05 05:57:50 -0400
Commit message:

 revised text
 
Package: metagenomeFeatures
Commit: 18c8fb6996d65b2aa1f2a853e3478017abfc9505
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-04 05:58:52 -0400
Commit message:

 Merge branch 'vignette-revision' of https://github.com/HCBravoLab/metagenomeFeatures into vignette-revision
 
Package: metagenomeFeatures
Commit: 4f6d412de91226bf13aecc631564155f29e030a8
Author: Nate Olson <nolson@nist.gov>
Date: 2018-10-04 05:58:40 -0400
Commit message:

 revised text and added sample data
 
Package: metagenomeFeatures
Commit: 177c6144044c86cebc7bfd246df6d2b5747c36f5
Author: Nate Olson <nolson@nist.gov>
Date: 2018-09-27 08:54:53 -0400
Commit message:

 fixed typo of variable name

Also made select params consistent 
Package: metagenomeFeatures
Commit: 8855206a16ae27e6a12070faefde1695f868a124
Author: Nate Olson <nolson@nist.gov>
Date: 2018-09-27 06:03:32 -0400
Commit message:

 debugging using phyloseq
 
Package: metagenomeFeatures
Commit: 3aaa84f4fb8cdb8394ab8a909fe32a2553097f95
Author: Nate Olson <nolson@nist.gov>
Date: 2018-09-26 05:59:50 -0400
Commit message:

 revised text incorporating phyloseq
 
Package: metagenomeFeatures
Commit: 019ff6e13574aee91f4bd031097c8c529f0619a6
Author: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Date: 2018-09-25 14:26:03 -0400
Commit message:

 generate & update docs
 
Package: metagenomeFeatures
Commit: 6a8863dce7c9ba1a4ce726f5480931539521d56b
Author: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Date: 2018-09-25 14:24:52 -0400
Commit message:

 update source documentation & vignette
 
Package: metagenomeFeatures
Commit: 7292a54d1512c9a6d4c8076e41d14b91a949ddd7
Author: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Date: 2018-09-25 14:22:48 -0400
Commit message:

 convert qiita data to rda & move to data folder
 
Package: metagenomeFeatures
Commit: e57fb4c431959d197b3dd9de8995775ac5fea988
Author: Nate Olson <nolson@nist.gov>
Date: 2018-09-25 06:10:19 -0400
Commit message:

 revised and added mgFeatures
 
Package: metagenomeFeatures
Commit: 2e634b9dc0138279b2a55f416f6b9ba2ea3d5b50
Author: Nate Olson <nolson@nist.gov>
Date: 2018-09-24 06:15:54 -0400
Commit message:

 outlined revisions
 
Package: metagenomeFeatures
Commit: 5167f08f45bd7e3380c2160b3203e73ea9f3258b
Author: Nate Olson <nolson@nist.gov>
Date: 2018-09-24 06:08:41 -0400
Commit message:

 Merge pull request #48 from HCBravoLab/biocCheck

Bioc check 
Package: metagenomeFeatures
Commit: fe54b0c845272f77fba62a5a8786de47a4cce8f4
Author: Nate Olson <nolson@nist.gov>
Date: 2018-09-21 21:27:30 -0400
Commit message:

 database-explore format and revision
 
Package: metagenomeFeatures
Commit: b5d988df725e8a7cbc7ca19c8e1cbbad6c23a4f8
Author: Nate Olson <nolson@nist.gov>
Date: 2018-09-21 19:22:25 -0400
Commit message:

 rebuild documentation
 
Package: metagenomeFeatures
Commit: 7580e79d08a23fb144ae112d416099f560866b68
Author: Nate Olson <nolson@nist.gov>
Date: 2018-09-21 19:10:41 -0400
Commit message:

 edits for submission
 
Package: metagenomeFeatures
Commit: 077814fe571e4f4793d53a87076b8d56d0754ec8
Author: Nate Olson <nolson@nist.gov>
Date: 2018-04-13 11:09:22 -0400
Commit message:

 removing purrr import
 
Package: CoGAPS
Commit: 569a5e8511f6e962d51cd403038919730c6ed229
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-12 15:21:17 -0500
Commit message:

 use precomputed result in examples
 
Package: CoGAPS
Commit: 0d6c1c5765911c6ffd9ef91522430ec83eaf2405
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-12 15:07:59 -0500
Commit message:

 updated result and compressed data
 
Package: CoGAPS
Commit: 794230902de0f1a695f8cc2696e4d21a7ab5fd56
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-12 14:57:23 -0500
Commit message:

 use boost pooled allocator instead of custom one
 
Package: CoGAPS
Commit: 3bd346139b4fcc49564c84aa3bb16df915ea7170
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-12 13:03:34 -0500
Commit message:

 updated docs & version
 
Package: CoGAPS
Commit: 0f808051a0b9b2d76ff9d3d5a5a79ff6aa1ccc4a
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-12 13:03:20 -0500
Commit message:

 stopped tracking indices
 
Package: CoGAPS
Commit: fcff158a06438e149d13d0577e8f711e314606d6
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-12 12:39:01 -0500
Commit message:

 removed benchmarking code'
 
Package: CoGAPS
Commit: 0e29a3bdc9447b145d30bc23abf29f44a0f301dd
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-12 12:34:22 -0500
Commit message:

 sparse cogaps optimized
 
Package: CoGAPS
Commit: e10998d9126a7f8d62edad8a0605e1a7325546a8
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 19:56:05 -0500
Commit message:

 fixed dot operator
 
Package: CoGAPS
Commit: c3c8a70d529c6fcdd8c34376419b45a021b25a02
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 19:09:16 -0500
Commit message:

 fixed s
 
Package: CoGAPS
Commit: 7ec72bb6dcfe66dda03a8a896f6f349539411949
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 18:41:09 -0500
Commit message:

 initialization of s doesn't need to square Z1
 
Package: CoGAPS
Commit: 77f624de714aad2151e857d8579566a5533402d2
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 18:31:37 -0500
Commit message:

 added check for same row in AlphaParameters
 
Package: CoGAPS
Commit: 2612d90ca4b570efcc292438734b71a284c941ab
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 18:18:32 -0500
Commit message:

 Merge branch 'master' into sparse_cogaps
 
Package: CoGAPS
Commit: 356a512fe1b553797cf10cb403de1c63b8d1b42a
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 18:17:49 -0500
Commit message:

 Merge branch 'sparse_cogaps' of github.com:FertigLab/CoGAPS into sparse_cogaps
 
Package: CoGAPS
Commit: 86b558c07e30633d245f5e790bfafb1d194931c4
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 18:17:33 -0500
Commit message:

 added helper function to build retina subset
 
Package: CoGAPS
Commit: 88fe7f99a3c51b0c1adda4cd414056f572e98814
Author: Tiger Gao <tigergao@jrtechsol.com>
Date: 2018-11-07 18:15:36 -0500
Commit message:

 Updated s2 algorithms in SparseGibbsSampler
 
Package: CoGAPS
Commit: 0870066907d93154e662cf5535b9d28bfe4fe2d3
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 17:39:08 -0500
Commit message:

 Merge branch 'develop' of github.com:FertigLab/CoGAPS into develop
 
Package: CoGAPS
Commit: cef93053d7e92854453cc05e02268cc4323e1b40
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 17:38:49 -0500
Commit message:

 fixed up tests
 
Package: CoGAPS
Commit: 17d2668f6186922e375e4c05e11ef1e087ababe6
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 17:06:01 -0500
Commit message:

 merge
 
Package: CoGAPS
Commit: b399c691776b4f6c7384279f1881097d4305103e
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 17:04:33 -0500
Commit message:

 generalize matrix operations with templates
 
Package: CoGAPS
Commit: c6ebc12751020e6e1ec52fa95fde6d3c4f28614b
Author: Tiger Gao <tigergao@jrtechsol.com>
Date: 2018-11-07 17:04:25 -0500
Commit message:

 Merge branch 'sparse_cogaps' of https://github.com/FertigLab/CoGAPS into sparse_cogaps
 
Package: CoGAPS
Commit: a5ea05e5802cf18ee2e2951f86e376a61a2bf6c9
Author: Tiger Gao <tigergao@jrtechsol.com>
Date: 2018-11-07 17:04:17 -0500
Commit message:

 Initial changes to S2 AlphaParameter functions in SparseGibbsSampler.cpp
 
Package: CoGAPS
Commit: 6875d6a86ec04b5769449ad3bdfb8c2840b03743
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 15:58:43 -0500
Commit message:

 added data
 
Package: CoGAPS
Commit: a87ad07f40a43b19ba6ddc095694724dee7d5c59
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 12:55:51 -0500
Commit message:

 cleaned up dot product functions with templates
 
Package: CoGAPS
Commit: 6252ebe0842ad0c7a4db8701268663a9a0af5802
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-07 12:42:13 -0500
Commit message:

 added shifted dot product
 
Package: CoGAPS
Commit: 551c9d40c13da77c424c32fb674b8c43c8fa13d5
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-06 16:38:59 -0500
Commit message:

 fix includes for CLI
 
Package: CoGAPS
Commit: 9cc4f4232ac6ec39fa239447ff7664a9d297cbf8
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-11-06 08:53:13 -0500
Commit message:

 Merge branch 'develop' into sparse_cogaps
 
Package: CoGAPS
Commit: 11d7cccd0e65e433a68d53b1dbfe1a3397766e77
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-10-30 19:35:51 -0400
Commit message:

 Merge branch 'develop' into sparse_cogaps
 
Package: CoGAPS
Commit: acee5f7001cdfae9f951b96faa0a6baa9c693f29
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-10-30 19:19:47 -0400
Commit message:

 Merge branch 'develop' into sparse_cogaps
 
Package: CoGAPS
Commit: d11df4ff33154e488f741e4c41126d295834799a
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-10-30 15:56:41 -0400
Commit message:

 use fast version
 
Package: CoGAPS
Commit: cccfacbcb4109f60b29f01cd90f860c82cf6b7e1
Author: Tom Sherman <tomsherman159@gmail.com>
Date: 2018-10-30 15:43:42 -0400
Commit message:

 working versions of three different iteration schemes
 
Package: SeqArray
Commit: 7ed6f23b4521e3f2525c82f6533a20d901ee0469
Author: Xiuwen Zheng <zhengxwen@gmail.com>
Date: 2018-11-12 14:05:25 -0600
Commit message:

 export a haploid VCF file
 
Package: matter
Commit: a60b3f3acd03d5264f3f44ac184e6e1db2f227b1
Author: kuwisdelu <k.bemis@northeastern.edu>
Date: 2018-11-12 14:38:02 -0500
Commit message:

 renamed internal bytes class to nbytes due to Rcpp
 
Package: matter
Commit: 5f98c6d1f33ee17ea71b89094215fbb1230eeea8
Author: kuwisdelu <k.bemis@northeastern.edu>
Date: 2018-11-12 14:04:51 -0500
Commit message:

 fixed lengths() bug in namespace
 
Package: bayNorm
Commit: bb25e5d57f6548fabdf1ff7cabd09e6595c1269b
Author: WENHAO TANG <wt215@ic.ac.uk>
Date: 2018-11-12 17:22:01 +0000
Commit message:

 1.1.2
 
Package: bayNorm
Commit: 995f3a6ba6a55269f8814dbd41994f69722ed417
Author: Wenhao <WT215@ic.ac.uk>
Date: 2018-11-12 16:50:36 +0000
Commit message:

 1.0.4
 
Package: bayNorm
Commit: 60abdde92159e89c58cbc5dbc891c7ae7e27ca26
Author: Wenhao <WT215@ic.ac.uk>
Date: 2018-11-12 16:18:50 +0000
Commit message:

 1.0.3
 
Package: bayNorm
Commit: 55942b4bd8954fe2921dcc98e73a4889ae88b0e8
Author: WENHAO TANG <wt215@ic.ac.uk>
Date: 2018-11-11 06:21:06 +0800
Commit message:

 1.0.2
 
Package: bayNorm
Commit: fc680ceae6cf0a00c6cf206168edc7a4de59db2a
Author: WENHAO TANG <wt215@ic.ac.uk>
Date: 2018-11-11 06:05:54 +0800
Commit message:

 1.0.1
 
Package: MTseeker
Commit: 44d9481efa1d5a42b406dcd09407260d43d69445
Author: ttriche <tim.triche@gmail.com>
Date: 2018-11-12 12:12:16 -0500
Commit message:

 remove suggests
 
Package: Prostar
Commit: f52b0837e66082ffbbbb9a640cf416fa16167f6a
Author: Samuel Wieczorek <samuel.wieczorek@cea.fr>
Date: 2018-11-12 15:56:46 +0100
Commit message:

 update in srv_ConvertData
 
Package: simpleSingleCell
Commit: 8b51edd5df925bb7d61a9aa8a379b1b69e4cd7b1
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 09:58:02 +0000
Commit message:

 Bumped version number, date.
 
Package: simpleSingleCell
Commit: df233d9377fb10e0223b3b50d8496572e420f773
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 09:53:07 +0000
Commit message:

 Switched back to computeSumFactors for the xtra workflows.
 
Package: simpleSingleCell
Commit: 9ef616a3530dec26588d062991402ecc866832a6
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 09:52:47 +0000
Commit message:

 Switched back to computeSumFactors for the doublet workflow.
 
Package: simpleSingleCell
Commit: d2b144a19d14b0bef3fbee366e9c948a08c5d30a
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 09:44:15 +0000
Commit message:

 Switched MNN workflow back to using computeSumFactors.
 
Package: simpleSingleCell
Commit: 9659d60805e0bd40be8208e43b4bb700d28bc534
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-11 22:17:36 +0000
Commit message:

 Switched back to computeSumFactors for the PBMC workflow.
 
Package: simpleSingleCell
Commit: b5a91dee9edc1452899b54259aad463d3104665f
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-11 21:49:21 +0000
Commit message:

 Switched back to computeSumFactors for UMI workflow.
 
Package: simpleSingleCell
Commit: a2483598f7b9a6856f476854be3fedcaec329de3
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-11 21:32:05 +0000
Commit message:

 Switched back to computeSumFactors for 416B workflow.
 
Package: scran
Commit: 8468949cc904677ed9d34e69a4b3f9326249f873
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 12:55:26 +0000
Commit message:

 Updated NEWS.
 
Package: scran
Commit: e021b2c13fecbee62c7ad28596276066a9a80f01
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 11:07:06 +0000
Commit message:

 Removed rand.seed usage in denoisePCA tests.
 
Package: scran
Commit: 7e8f43670e7dfb08488e503c19517f66859ef8eb
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 11:06:52 +0000
Commit message:

 Purged simpleSumFactors tests.
 
Package: scran
Commit: 6280863bf4b02bcc8dac40d7a3fd5b4c35bfcd00
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 10:56:30 +0000
Commit message:

 Centralized min.mean intersection comments, minor docfixes.
 
Package: scran
Commit: 8ed694f0f11d3520add4d28b814b62be22fa877d
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 10:45:43 +0000
Commit message:

 Rebuilt NAMESPACE, updated DESCRIPTION.
 
Package: scran
Commit: 0f52d38e72814b039008074a0618c0ef98a98b57
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 10:44:56 +0000
Commit message:

 Streamlined subsetting in quickCluster.
 
Package: scran
Commit: ce9eb8a20d29835d155d904f82a9892d628c458e
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 10:42:27 +0000
Commit message:

 Expanded quickCluster tests for new behaviour and options.
 
Package: scran
Commit: ea0b945763b34f44680e41c3d7d32000b5fc1410
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 09:51:20 +0000
Commit message:

 Updated quickCluster documentation.
 
Package: scran
Commit: 5533e79f0e79c93450c37e74dcbd64e670f5e8c7
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-12 09:50:21 +0000
Commit message:

 Further changes to defaults, altered behaviour of 'd'.
 
Package: scran
Commit: 7ad09e74d4ca4e40f0d2642b98135c1d35dcb338
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-11 18:31:33 +0000
Commit message:

 Purged all mentions of simpleSumFactors.
 
Package: scran
Commit: 648964278c77f567d6e101455a87cb307f153e0b
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-11 18:29:54 +0000
Commit message:

 Added non-rank-based clustering to quickCluster.
Allow changing of graph clustering algorithm.
Altered defaults for quickCluster.
 
Package: scran
Commit: f1ddfe99a057bf06b3085cc3eed2431504ab71a4
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-11 18:22:07 +0000
Commit message:

 Removed deprecated rand.seed in denoisePCA.
 
Package: scran
Commit: 97170a168fb2fe123271e970258692195a97980b
Author: Aaron Lun <aaron.lun@cruk.cam.ac.uk>
Date: 2018-11-07 18:38:41 +0000
Commit message:

 Commented on speed advantages of splines.
 
Package: TCGAbiolinks
Commit: 79626930df46b57d8dd74c8e3da6e1bf0a4a856a
Author: Tiago Chedraoui Silva <tiagochst@gmail.com>
Date: 2018-11-12 09:25:13 -0200
Commit message:

 Adding WGBS example
 
Package: RnaSeqSampleSize
Commit: ccbc5431996b61c1043a4dc418d111e81baa995a
Author: ShilinZhao <zhaoshilin@gmail.com>
Date: 2018-11-12 02:18:04 -0600
Commit message:

 Fix a bug in power estiamtion (cumsumBorder.cpp), which make results
incorrect when k not equal to one. 
Package: KinSwingR
Commit: 712c2e3bb8759fb8213c892309b05f867f3b3804
Author: Ashley J. Waardenberg <a.waardenberg@gmail.com>
Date: 2018-11-12 17:38:54 +1000
Commit message:

 bump version number
 
Package: KinSwingR
Commit: 691e78c8df465db1a4c999d26171391e2f7964ea
Author: Ashley J. Waardenberg <a.waardenberg@gmail.com>
Date: 2018-11-12 15:39:31 +1000
Commit message:

 Merge remote-tracking branch 'upstream/RELEASE_3_8'

# Conflicts:
#	DESCRIPTION
#	NEWS
#	R/generate_pwms.r
#	R/swing.r
 
Package: KinSwingR
Commit: aeef2568cfd2237cd16db9dbe3afa48835b19028
Author: Ashley J. Waardenberg <a.waardenberg@gmail.com>
Date: 2018-11-12 15:19:41 +1000
Commit message:

 vesrion bump
bug fix in network output function for swing
 
Package: KinSwingR
Commit: 1bf8f5a66831ef7a1220722ed94a379a7f5dd11e
Author: Ashley J. Waardenberg <a.waardenberg@gmail.com>
Date: 2018-11-09 15:25:14 +1000
Commit message:

 update to vignette
 
Package: KinSwingR
Commit: 31e532e4e3f3c5ccc0359a8b218d1e9fb223754a
Author: Ashley J. Waardenberg <a.waardenberg@gmail.com>
Date: 2018-11-09 15:24:48 +1000
Commit message:

 version bump
 
Package: KinSwingR
Commit: 40de34ddc7a3e9816fbf1680f7d8b88695baa11b
Author: Ashley J. Waardenberg <a.waardenberg@gmail.com>
Date: 2018-11-05 10:20:51 +1000
Commit message:

 make viewPWM visible
 
Package: KinSwingR
Commit: 87cb4c70eadbdaa63eab8bba0463ae9bcb251c78
Author: Ashley J. Waardenberg <a.waardenberg@gmail.com>
Date: 2018-11-05 10:20:51 +1000
Commit message:

 version bump release
 
Package: KinSwingR
Commit: 442808d187270ea0906616d1022ea61da64de388
Author: Ashley J. Waardenberg <a.waardenberg@gmail.com>
Date: 2018-11-05 10:38:14 +1000
Commit message:

 big fix
 
Package: GenomeInfoDb
Commit: 6172bc38b850ac248dbbf53e769eac3f6f1ec6f0
Author: Martin Morgan <martin.morgan@roswellpark.org>
Date: 2018-11-11 21:04:20 -0500
Commit message:

 version bump
 
Package: GenomeInfoDb
Commit: 662b19f555b814a4e2240b1328930717cd3f1349
Author: Martin Morgan <martin.morgan@roswellpark.org>
Date: 2018-11-11 21:04:00 -0500
Commit message:

 unit test clean-up
 
Package: GenomeInfoDb
Commit: f9dbcb87244e36ab75a52ffb3dc5d91b90bda8a3
Author: Martin Morgan <martin.morgan@roswellpark.org>
Date: 2018-11-11 21:03:13 -0500
Commit message:

 don't read README or .csv file when looking for species seqinfo

- closes issue #3
 
Package: ComplexHeatmap
Commit: 58fecd75969de96a8a288fd490536c424f70105c
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-11 16:37:53 +0100
Commit message:

 merge
 
Package: ComplexHeatmap
Commit: bbe02434a0e687e063eb53b79a8498aaed310699
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-09 16:15:22 +0100
Commit message:

 add content in vignette
 
Package: ComplexHeatmap
Commit: 63fdc8dc49fa46b57c438fafd1c01b326eaead70
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-09 12:32:15 +0100
Commit message:

 padd outline to grid.boxplot()
 
Package: ComplexHeatmap
Commit: 94175e6eba7cfed9f859e9236036234e08a28f26
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-09 12:24:17 +0100
Commit message:

 padd outline to grid.boxplot()
 
Package: ComplexHeatmap
Commit: cef0c973fed1ed87520cd04721696deb840cccae
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-08 20:08:09 +0100
Commit message:

 add sanity check
 
Package: ComplexHeatmap
Commit: b645de486524d6df859a995afd1dc8e55b3832ec
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-08 11:29:39 +0100
Commit message:

 remove browser()
 
Package: ComplexHeatmap
Commit: 94f8e0292797ee5edc7ace9647adbab23aa4bdb8
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-07 21:27:05 +0100
Commit message:

 set adjust_annotation_extension to NULL
 
Package: ComplexHeatmap
Commit: 0f5c070d50b823fae6abea9d846032c141c333a1
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-07 12:54:18 +0100
Commit message:

 Update zzz.R 
Package: ComplexHeatmap
Commit: 353d13273cc8e97a0da3422d95ea089841f5bad5
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-05 13:37:50 +0100
Commit message:

 update
 
Package: ComplexHeatmap
Commit: d84469dc4efb4533c6399a7ddc4558ef516cf9c8
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-05 11:03:39 +0100
Commit message:

 update
 
Package: ComplexHeatmap
Commit: 04a1dc3881fc0d9eec2960a2a50ed304f4f91baf
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-05 00:08:10 +0100
Commit message:

 add dev.null() to get rid of white page
 
Package: ComplexHeatmap
Commit: ad1cbe49e1d208a419e32b2749a1a79bf495c1ae
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-02 16:43:14 +0100
Commit message:

 try to steal code from RGraphicsDevice package
 
Package: ComplexHeatmap
Commit: 3251d652770c8f7b23dfd1fbd81e9671fa565aaa
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-02 12:12:02 +0100
Commit message:

 check arguments from old versions
 
Package: ComplexHeatmap
Commit: 41afe8bf1cf58418bf735db3448e0a34b1a906ed
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-02 12:11:30 +0100
Commit message:

 check arguments from old versions
 
Package: ComplexHeatmap
Commit: bfaaa9ddf6188d3b7bfaf1672b8b66776a3ac55e
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-02 08:57:06 +0100
Commit message:

 update
 
Package: ComplexHeatmap
Commit: d9a1645d34896feb886b0f80981ae6daac1276bd
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-31 16:23:59 +0100
Commit message:

 update
 
Package: ComplexHeatmap
Commit: 03d6a8673d6ef2429d33df541d13e3578a7eb54b
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-30 23:32:01 +0100
Commit message:

 vignettes added
 
Package: ComplexHeatmap
Commit: 7df890b4bcae48ea2a2188abfb147493b95331e2
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-30 16:14:00 +0100
Commit message:

 update
 
Package: ComplexHeatmap
Commit: b5d9976d785abd8a0fdc5af634f4e42dd190717f
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-30 13:52:23 +0100
Commit message:

 remove old vignettes
 
Package: ComplexHeatmap
Commit: 80a701243e63716c041ae271232949a9ff999714
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-30 13:46:49 +0100
Commit message:

 update readme
 
Package: ComplexHeatmap
Commit: 0bb5000f975608b4874b00bbf38f7738dd77a4ce
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-30 09:58:14 +0100
Commit message:

 update
 
Package: ComplexHeatmap
Commit: d13bd7071e30b9337747c2d4c15c34546fb637eb
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-29 16:16:09 +0100
Commit message:

 update
 
Package: ComplexHeatmap
Commit: 991774bb84274ca39f8672966edcc60865921617
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-28 19:31:16 +0100
Commit message:

 update code for adjusting oncoprint
 
Package: ComplexHeatmap
Commit: 2f422b0264f186ae457f11d3d45a10c742e8c84c
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-27 22:25:57 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: d20bef855048b67c80fa7ca6f582dfb9c3dc6181
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-26 13:45:00 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: ed2ff731030095340c5d3a0b7e2916b2b84d5b2e
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-25 21:44:10 +0200
Commit message:

 adjust color order on barplot
 
Package: ComplexHeatmap
Commit: fcefb3223b71ff1acfb3e472eef9b15e8d0bff19
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-25 21:37:48 +0200
Commit message:

 adjust color order on barplot
 
Package: ComplexHeatmap
Commit: 987ea44a9f49e0de89ccd9a147f21974cf07a7b2
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-25 16:47:24 +0200
Commit message:

 adjust annotation size
 
Package: ComplexHeatmap
Commit: f0a25823904cc0da7e32277270cd02c6a57b49d5
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-25 14:13:17 +0200
Commit message:

 fixed device issue under rstudio
 
Package: ComplexHeatmap
Commit: fa6b39a8c1857af4e174d040e96c2170496e0470
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-25 07:59:00 +0200
Commit message:

 change default value of row_dend_reorder
 
Package: ComplexHeatmap
Commit: c3a4a08eb561ba9f98fa326e715145ff9250265f
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-24 19:25:23 +0200
Commit message:

 update travis.yml
 
Package: ComplexHeatmap
Commit: 6f036283457d97d5f0c4f45b868a88bbb0869525
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-24 15:37:30 +0200
Commit message:

 add a line at dendrogram
 
Package: ComplexHeatmap
Commit: 3c40a7c14bc73017ab55d2fa3a1ee9fbb846b891
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-23 21:59:12 +0200
Commit message:

 documentation checked
 
Package: ComplexHeatmap
Commit: 33a5a58f5b065fb80852eacddbf4c42a480f28de
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-22 14:26:03 +0200
Commit message:

 pass width to AnnotationFunction
 
Package: ComplexHeatmap
Commit: 64d651fe5b6d1e2addda3909c83a89b5a0596b2e
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-22 07:57:29 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: 864bd88979bc32a75c227775f70f6ef675dc51a4
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-19 21:08:59 +0200
Commit message:

 fix some bugs
 
Package: ComplexHeatmap
Commit: 2823ebdf9497fe8d65cf9e07718845d6971f1cc9
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-19 13:53:49 +0200
Commit message:

 merge
 
Package: ComplexHeatmap
Commit: c3ef40cd846fbc2443bb1ff648ba196b5845126e
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-19 13:53:11 +0200
Commit message:

 fix gp bug
 
Package: ComplexHeatmap
Commit: 8ef41188cfb86dfee0d9e08f94f5a2a6a8140c58
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-18 13:39:39 +0200
Commit message:

 fixed several bugs
 
Package: ComplexHeatmap
Commit: 7db3856b21f7bb8c17475dfc9ada6eb2561e8350
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-17 15:51:39 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: d9834c5677943f4532ebba6ea54840616d97e99f
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-17 08:09:36 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: 65fecf1c9b84f9ad84f4eeaaad95e93cd89c0656
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-16 07:54:05 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: 9024192150ded3d473da2e77457427ca8059a93b
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-15 15:50:26 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: 80cba0eed82a89697b23f4acf4b78c6fbff31f1c
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-12 22:21:24 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: b8dacfccf1b889727e6159cd17d76df338a03288
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-12 21:19:48 +0200
Commit message:

 R CMD check passed
 
Package: ComplexHeatmap
Commit: 1a56796e92a1660ed0b5c76404f3b0252ffcb763
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-12 17:28:37 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: a93897a0a4fdc0c5dbce7a2ad15d95ebcf4c74a6
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-11 16:44:34 +0200
Commit message:

 udpate
 
Package: ComplexHeatmap
Commit: 028e61a263cc2b48bcd5989e92a5f9c81b59dfd3
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-10 20:52:27 +0200
Commit message:

 add gird.boxplot
 
Package: ComplexHeatmap
Commit: cc35650ae8103e1f9f62de2a6784d6605572416d
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-10 16:22:23 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: bb20f132696f200569e784930ce60af3621f599c
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-09 22:28:04 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: 450fb5434799017246c3715a042c24ca8a1b187f
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-09 12:30:53 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: 6320aa6800a8ff9debb0c80428d5c91660bb3fe6
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-08 17:30:35 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: c4a66bf9adc18c87d304bc555eaa714622c37197
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-08 08:01:54 +0200
Commit message:

 merge
 
Package: ComplexHeatmap
Commit: 664e83bbef45f49f3dedd4c9c5e674177a205e05
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-05 20:59:16 +0200
Commit message:

 Merge branch 'master' of https://github.com/jokergoo/ComplexHeatmap
 
Package: ComplexHeatmap
Commit: d1dbdc082c9bb6d4dd4ab9be75a318c55cec39cc
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-05 20:59:12 +0200
Commit message:

 merge
 
Package: ComplexHeatmap
Commit: da78b5d85cc5b524b0ae870d864488968fc19943
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-05 20:56:46 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: 95035dcf8c5e60991ca00e9a76ee72a3c3532205
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-05 20:47:16 +0200
Commit message:

 Merge branch 'master' of https://github.com/jokergoo/ComplexHeatmap
 
Package: ComplexHeatmap
Commit: a3f535b0767d4b5806f6b1877355cdb2c3a0c49d
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-05 20:47:14 +0200
Commit message:

 merge
 
Package: ComplexHeatmap
Commit: 6849ddae55c1e4d40a0c2b465166810be0a0d2c1
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-05 14:02:50 +0200
Commit message:

 imporved according to the package reference
 
Package: ComplexHeatmap
Commit: 6af1fae58c1c9600ba98ad7f993593c4f7b1d332
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-10-04 09:41:34 +0200
Commit message:

 update
 
Package: ComplexHeatmap
Commit: 933e808c07b42efd15445409d0072817c88cd1de
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-02 16:36:00 +0200
Commit message:

 small bug fix
 
Package: ComplexHeatmap
Commit: 8c965e285ea92054415eb2e0a68b4ea0cc87e4ad
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-10-01 17:06:45 +0200
Commit message:

 support qq and glue
 
Package: ComplexHeatmap
Commit: e84ad9b47a3ae75029e315d5cdab31fdab595924
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-09-29 13:30:32 +0200
Commit message:

 support qq, glue and tibble
 
Package: ComplexHeatmap
Commit: 5436f156636d06fb3e27d3594e61339fad7fd6f0
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-09-26 08:58:51 +0200
Commit message:

 fixed a typo
 
Package: ComplexHeatmap
Commit: 6f11a2712cd6e7132e935ef263fd77079f75dedc
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-09-25 09:59:43 +0200
Commit message:

 oncoPrint is vectorized
 
Package: ComplexHeatmap
Commit: 1bba04a0e04cf4cbf0af22bfed420f6cd72024a7
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-09-22 12:01:44 +0200
Commit message:

 beta release
 
Package: ComplexHeatmap
Commit: 249fdfa0e579c2c1b9bc56142e743705e1bed65d
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-09-21 00:09:48 +0200
Commit message:

 vignette check passed
 
Package: ComplexHeatmap
Commit: ad35494a5e7647cd922852e0a25e331ae33551c3
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-09-20 14:48:08 +0200
Commit message:

 R CMD check passed
 
Package: ComplexHeatmap
Commit: 30d2c5b28f12b534bad07438c2aa712e3256e6f4
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-09-18 12:40:29 +0200
Commit message:

 a backup push
 
Package: ComplexHeatmap
Commit: 1ee53830d9dbeb5a3861589c6a21bb712f1412df
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-09-11 12:52:42 +0200
Commit message:

 almost works
 
Package: ComplexHeatmap
Commit: dbde21c2f14db0d2dfadc3c9cc5d88452ff55065
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-09-10 13:36:12 +0200
Commit message:

 adding heamtaps by columns generally works now
 
Package: ComplexHeatmap
Commit: e27480b9de0afdd1ba3cedbd2b7a4d7e1454183b
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-09-10 12:14:12 +0200
Commit message:

 backup
 
Package: ComplexHeatmap
Commit: 10fbf31ce076da8b148d3422da4289bbcfd3ff91
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-09-04 22:01:49 +0200
Commit message:

 add documentations
 
Package: ComplexHeatmap
Commit: 15d529ec304eadcb7c6b149a866a76a96c2f6d52
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-08-23 22:29:55 +0200
Commit message:

 backup
 
Package: ComplexHeatmap
Commit: 402ff791d63518d932814d67a1bebdcd376c2d01
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-08-23 22:29:32 +0200
Commit message:

 backup
 
Package: ComplexHeatmap
Commit: d7a3c7afc61d865e658160e5a153c0ae12e7dfb3
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-08-12 22:47:19 +0200
Commit message:

 some changes
 
Package: ComplexHeatmap
Commit: 261bfec2b552c20918b5deabd79b02b08c588164
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-08-02 14:43:21 +0200
Commit message:

 improved HeatmapAnnotation class
 
Package: ComplexHeatmap
Commit: c572e4d861c9c013245698dfdf73a9ae3891497e
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-07-26 23:25:49 +0200
Commit message:

 removed files
 
Package: ComplexHeatmap
Commit: 783c77fdb29b50282aaa2ca17a04d29a251dba8f
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-07-26 23:25:19 +0200
Commit message:

 add AnnotationFunction class
 
Package: EnrichedHeatmap
Commit: 4cf86cc204b4b7767769ebeaeb45fc1b36e16ce4
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-11 16:36:20 +0100
Commit message:

 update
 
Package: EnrichedHeatmap
Commit: e1e92e2fd7a0d59e95b0541771f6be47ce55a47c
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-11 11:37:48 +0100
Commit message:

 vignette revised
 
Package: EnrichedHeatmap
Commit: d9c8215f8b7a729cc75cf42e72bfa1b847bceea5
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-10 10:43:12 +0100
Commit message:

 Merge branch 'master' of https://github.com/jokergoo/EnrichedHeatmap
 
Package: EnrichedHeatmap
Commit: 0a41b797d7c8cb23acf25f6b54650be1bd1e0d15
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-10 10:43:09 +0100
Commit message:

 merge
 
Package: EnrichedHeatmap
Commit: 8e23742294d86af9d8f0deaa54ec540467202118
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-10 10:42:17 +0100
Commit message:

 update
 
Package: EnrichedHeatmap
Commit: 19c1c7a7066e50294f755491c4033a4592375860
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-10 10:04:44 +0100
Commit message:

 Merge branch 'master' of https://github.com/jokergoo/EnrichedHeatmap
 
Package: EnrichedHeatmap
Commit: 3065fd43eaec5b096e259463448a5dcc5827d2e2
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-10 10:04:39 +0100
Commit message:

 update
 
Package: EnrichedHeatmap
Commit: 24a61e2408859fbb2f8565e875fd54c617afa711
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-10 10:03:39 +0100
Commit message:

 generate vignette
 
Package: EnrichedHeatmap
Commit: 979e349677f87822f3ce49eafc06fcd675dcf601
Author: jokergoo <jokergoo@gmail.com>
Date: 2018-11-09 16:16:01 +0100
Commit message:

 update vignette
 
Package: EnrichedHeatmap
Commit: f2987df9471ffdf6a3b947728eb17bec5f227368
Author: Zuguang Gu <jokergoo@gmail.com>
Date: 2018-11-09 09:44:25 +0100
Commit message:

 update
 

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