Bioconductor has moved to GIT for contributed packages; the subversion logs are no longer active. The following are the git logs.
GIT Logs
This is a list of recent commits to git.bioconductor.org, the devel(development) branch of the Bioconductor GIT repository.
This list is also available as an RSS feed (devel branch), and RSS feed (release branch)
Package: Ibex
Commit: 124a6b38d19f1131567c0157bea276a4d179b7c5
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-16 15:53:21 -0700
Commit message:
Commit: 124a6b38d19f1131567c0157bea276a4d179b7c5
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-16 15:53:21 -0700
Commit message:
Ibex 0.99.34: Restore pre-0.99.33 ibex_vdj.rda
Package: BiocGenerics
Commit: e33e990405279c99ebd99580dd961c98e2de6f7c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-16 15:23:29 -0700
Commit message:
Commit: e33e990405279c99ebd99580dd961c98e2de6f7c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-16 15:23:29 -0700
Commit message:
BiocGenerics 0.55.4: Small tweak to updateObject(data.frame)
Package: scrapper
Commit: 7f61f83db0150d95ebe1f33a87e83af7140aa06f
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2025-10-16 14:57:40 -0700
Commit message:
Commit: 7f61f83db0150d95ebe1f33a87e83af7140aa06f
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2025-10-16 14:57:40 -0700
Commit message:
Updated bindings to scran_markers functions. - Added call to score_markers_best() if all.pairwise= is an integer. - Added min.rank.limit= so users can choose how much min-rank they want. - Allow users to disable group-wise means and detected if not needed.
Package: assorthead
Commit: 87148384820b2be468884d15a6506da2a7d59b99
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2025-10-16 14:58:54 -0700
Commit message:
Commit: 87148384820b2be468884d15a6506da2a7d59b99
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2025-10-16 14:58:54 -0700
Commit message:
Updated version of scran_markers and topicks.
Package: assorthead
Commit: dd9711980b6cbfe352d6cb069978b9878cf142c5
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2025-10-09 11:24:41 -0700
Commit message:
Commit: dd9711980b6cbfe352d6cb069978b9878cf142c5
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2025-10-09 11:24:41 -0700
Commit message:
Updated the version of tatami_hdf5.
Package: epiregulon
Commit: 591e442fe9f75677a5154ea401e5c3c9b7682a57
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 19:43:25 +0000
Commit message:
Commit: 591e442fe9f75677a5154ea401e5c3c9b7682a57
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 19:43:25 +0000
Commit message:
v1.99.2
Package: epiregulon
Commit: 38da628e3f5c1eeee0cde1715884f487fffe9c86
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 18:35:19 +0000
Commit message:
Commit: 38da628e3f5c1eeee0cde1715884f487fffe9c86
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 18:35:19 +0000
Commit message:
small corrections
Package: epiregulon
Commit: 2ae21c3affce10c9dee16a6500c68a548b404f76
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 15:39:13 +0000
Commit message:
Commit: 2ae21c3affce10c9dee16a6500c68a548b404f76
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 15:39:13 +0000
Commit message:
calculate FDR from all p-values at once
Package: OSTA
Commit: 29eccde04ca33615a98dff3f0bb5d68e96969620
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-16 14:34:37 -0400
Commit message:
Commit: 29eccde04ca33615a98dff3f0bb5d68e96969620
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-16 14:34:37 -0400
Commit message:
version and date
Package: OSTA
Commit: 6fec36768386a565782abfc513f2504af98f8be6
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-16 14:29:42 -0400
Commit message:
Commit: 6fec36768386a565782abfc513f2504af98f8be6
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-16 14:29:42 -0400
Commit message:
Merge pull request #235 from lmweber/python-reticulate Update Python interoperability to use Miniconda, Conda, and reticulate
Package: OSTA
Commit: 87dd86c884143585b3b38cf0e23036ec38f93d8f
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-16 00:51:56 -0400
Commit message:
Commit: 87dd86c884143585b3b38cf0e23036ec38f93d8f
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-16 00:51:56 -0400
Commit message:
install BS from Bioc
Package: OSTA
Commit: a6323b8b7f50f03630f07e8e7a15af337dbd9973
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 22:47:01 -0400
Commit message:
Commit: a6323b8b7f50f03630f07e8e7a15af337dbd9973
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 22:47:01 -0400
Commit message:
update text to clarify re-using an existing Python installation
Package: OSTA
Commit: 6a023f6729fe15a28c99f35b69a7f7b3b2be6911
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 21:28:00 -0400
Commit message:
Commit: 6a023f6729fe15a28c99f35b69a7f7b3b2be6911
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 21:28:00 -0400
Commit message:
fix outs/ directories with updated TENxVisium()
Package: OSTA
Commit: c14eb44770f2a1fa4cdb13c9604f811d503d0493
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 21:22:08 -0400
Commit message:
Commit: c14eb44770f2a1fa4cdb13c9604f811d503d0493
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 21:22:08 -0400
Commit message:
add GenomeInfoDb manually as dependency due to changes to GenomicRanges
Package: OSTA
Commit: 1c66798f88fd7c7f985db91d4afd3e1ef358eb90
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 19:22:56 -0400
Commit message:
Commit: 1c66798f88fd7c7f985db91d4afd3e1ef358eb90
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 19:22:56 -0400
Commit message:
fix outs/ directory for updated TENxVisium()
Package: OSTA
Commit: 507742bc2e27f7ab194bfe95f1d33f3d1c620955
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 17:33:36 -0400
Commit message:
Commit: 507742bc2e27f7ab194bfe95f1d33f3d1c620955
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 17:33:36 -0400
Commit message:
revert eval=FALSE now with correct BS dependencies
Package: OSTA
Commit: 34a9c21335651706e7e5299fb937e4cd70c84d01
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 16:57:54 -0400
Commit message:
Commit: 34a9c21335651706e7e5299fb937e4cd70c84d01
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 16:57:54 -0400
Commit message:
install correct devel versions of dependencies for BayesSpace
Package: OSTA
Commit: 4a03125779ec13e977ecb6be0ae34b28389956e2
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 11:47:38 -0400
Commit message:
Commit: 4a03125779ec13e977ecb6be0ae34b28389956e2
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 11:47:38 -0400
Commit message:
skip plot
Package: OSTA
Commit: 7f5c413cb49edec58660b83674d1280e4230df14
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 11:46:28 -0400
Commit message:
Commit: 7f5c413cb49edec58660b83674d1280e4230df14
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 11:46:28 -0400
Commit message:
additional gc
Package: OSTA
Commit: 5fda99baf6771b917cd30a564bbaf2bafa9260b3
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 09:45:41 -0400
Commit message:
Commit: 5fda99baf6771b917cd30a564bbaf2bafa9260b3
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 09:45:41 -0400
Commit message:
pause imcRtools
Package: OSTA
Commit: 529ffb89a52e9ac641c79ab54fb4adbe03008315
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 09:43:06 -0400
Commit message:
Commit: 529ffb89a52e9ac641c79ab54fb4adbe03008315
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-15 09:43:06 -0400
Commit message:
gc() to reduce memory usage
Package: OSTA
Commit: 4c57345c3224f97e705a7502758ae7b8c4144066
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-13 15:22:24 -0400
Commit message:
Commit: 4c57345c3224f97e705a7502758ae7b8c4144066
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-13 15:22:24 -0400
Commit message:
install BS from GitHub
Package: OSTA
Commit: 800ac13e1dee084349f332a93d9c24871a0e3d66
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-13 15:21:30 -0400
Commit message:
Commit: 800ac13e1dee084349f332a93d9c24871a0e3d66
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-13 15:21:30 -0400
Commit message:
pause SpotSweeper
Package: OSTA
Commit: e5cf82768fc22ffa8fa740f51db618e01ee98e60
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-13 14:52:56 -0400
Commit message:
Commit: e5cf82768fc22ffa8fa740f51db618e01ee98e60
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-13 14:52:56 -0400
Commit message:
comment and wording
Package: OSTA
Commit: ef073db32d73fd382aeadbed14b7996d67ad5a2b
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-13 14:10:15 -0400
Commit message:
Commit: ef073db32d73fd382aeadbed14b7996d67ad5a2b
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-13 14:10:15 -0400
Commit message:
skip basilisk
Package: OSTA
Commit: 5566b74c82e18fe6e530ed6877b7de1700f3a107
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-13 11:38:07 -0400
Commit message:
Commit: 5566b74c82e18fe6e530ed6877b7de1700f3a107
Author: Lukas Weber <lmweb012@gmail.com>
Date: 2025-10-13 11:38:07 -0400
Commit message:
reorganize python interoperability chapter to start with conda and reticulate
Package: OSTA
Commit: bf2906a5deab7bdf29234fa07e5a6b92701cd2e3
Author: Helena L. Crowell <helena@crowell.eu>
Date: 2025-10-09 10:19:07 +0200
Commit message:
Commit: bf2906a5deab7bdf29234fa07e5a6b92701cd2e3
Author: Helena L. Crowell <helena@crowell.eu>
Date: 2025-10-09 10:19:07 +0200
Commit message:
+`SpaceTrooper` in "img-quality-control"
Package: OSTA
Commit: 7dad11441c4d12a49279d2203322e09f924225a4
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-09 10:07:38 +0200
Commit message:
Commit: 7dad11441c4d12a49279d2203322e09f924225a4
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-09 10:07:38 +0200
Commit message:
rmv caching
Package: OSTA
Commit: 6fb9beb93aac57fa893633ca373c42b4df9d03b6
Author: Helena L. Crowell <helena@crowell.eu>
Date: 2025-10-09 10:01:25 +0200
Commit message:
Commit: 6fb9beb93aac57fa893633ca373c42b4df9d03b6
Author: Helena L. Crowell <helena@crowell.eu>
Date: 2025-10-09 10:01:25 +0200
Commit message:
Merge pull request #37 from HelenaLC/img-qc revise intro; reformat plot
Package: OSTA
Commit: af8890fa40114c56968a8373c6f39e531d5986fc
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-09 09:55:42 +0200
Commit message:
Commit: af8890fa40114c56968a8373c6f39e531d5986fc
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-09 09:55:42 +0200
Commit message:
revise intro; reformat plot
Package: OSTA
Commit: e8ac905f7524e2a176fe1d3fa971390502fcf2f2
Author: Helena L. Crowell <helena@crowell.eu>
Date: 2025-10-08 20:00:12 +0200
Commit message:
Commit: e8ac905f7524e2a176fe1d3fa971390502fcf2f2
Author: Helena L. Crowell <helena@crowell.eu>
Date: 2025-10-08 20:00:12 +0200
Commit message:
+`SpaceTrooper` in "img-quality-control" chp
Package: OSTA
Commit: 9f7db74451e19a2c38a825f8dbdda4b3da17728a
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 19:58:52 +0200
Commit message:
Commit: 9f7db74451e19a2c38a825f8dbdda4b3da17728a
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 19:58:52 +0200
Commit message:
+Imports:SpaceTrooper
Package: OSTA
Commit: 07a2f3753b4c4418d886134373b75e7352c6e227
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 19:58:21 +0200
Commit message:
Commit: 07a2f3753b4c4418d886134373b75e7352c6e227
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 19:58:21 +0200
Commit message:
incorporate SpaceTrooper
Package: OSTA
Commit: 73c8df8707439d9cd64028fc34a0a2633733430c
Author: Helena L. Crowell <helena@crowell.eu>
Date: 2025-10-08 17:30:24 +0200
Commit message:
Commit: 73c8df8707439d9cd64028fc34a0a2633733430c
Author: Helena L. Crowell <helena@crowell.eu>
Date: 2025-10-08 17:30:24 +0200
Commit message:
decon/Visium HD revision
Package: OSTA
Commit: d8bd694897ba2d8f2c40e6c8534634710703f4ca
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 16:43:12 +0200
Commit message:
Commit: d8bd694897ba2d8f2c40e6c8534634710703f4ca
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 16:43:12 +0200
Commit message:
simpilfy hyperlink to workshop
Package: OSTA
Commit: 21dbed6356ae3c471cb97763aa9eec5efcfadedf
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 16:40:44 +0200
Commit message:
Commit: 21dbed6356ae3c471cb97763aa9eec5efcfadedf
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 16:40:44 +0200
Commit message:
increase png rendering size
Package: OSTA
Commit: f7b2f6d88d4d443d907acdd02a28f4ca65072c82
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 16:30:40 +0200
Commit message:
Commit: f7b2f6d88d4d443d907acdd02a28f4ca65072c82
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 16:30:40 +0200
Commit message:
Merge branch 'sandbox' into vhd_hlc
Package: OSTA
Commit: ad9369e065998460c7b965eb799ae5930c343103
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 16:30:17 +0200
Commit message:
Commit: ad9369e065998460c7b965eb799ae5930c343103
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 16:30:17 +0200
Commit message:
hlc revision
Package: OSTA
Commit: cfde6fe0af061b267fea091c1ffb0387a4d37ecf
Author: Helena L. Crowell <helena@crowell.eu>
Date: 2025-10-08 14:02:33 +0200
Commit message:
Commit: cfde6fe0af061b267fea091c1ffb0387a4d37ecf
Author: Helena L. Crowell <helena@crowell.eu>
Date: 2025-10-08 14:02:33 +0200
Commit message:
aesthetic revision of `spatialFDA` updates
Package: OSTA
Commit: 09ccb83845ca725c5db76c98bc60daab291d0307
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 14:01:46 +0200
Commit message:
Commit: 09ccb83845ca725c5db76c98bc60daab291d0307
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-08 14:01:46 +0200
Commit message:
spatialFDA HLC revision
Package: OSTA
Commit: e5393e868545b00a1d49b70eb2ff72b7a9b53d34
Author: Estella Yixing Dong <estelladong729@gmail.com>
Date: 2025-10-08 10:03:12 +0200
Commit message:
Commit: e5393e868545b00a1d49b70eb2ff72b7a9b53d34
Author: Estella Yixing Dong <estelladong729@gmail.com>
Date: 2025-10-08 10:03:12 +0200
Commit message:
Merge pull request #12 from estellad/vhdcell remove tidyverse from load libraries
Package: OSTA
Commit: e02b9d3ceb8fc1a658b52df4420a483ede4580fc
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-08 10:01:10 +0200
Commit message:
Commit: e02b9d3ceb8fc1a658b52df4420a483ede4580fc
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-08 10:01:10 +0200
Commit message:
remove tidyverse from load libraries
Package: OSTA
Commit: 355f34cd1cc2adba1111eeaca1aabbdde20e346b
Author: Estella Yixing Dong <estelladong729@gmail.com>
Date: 2025-10-08 08:59:45 +0200
Commit message:
Commit: 355f34cd1cc2adba1111eeaca1aabbdde20e346b
Author: Estella Yixing Dong <estelladong729@gmail.com>
Date: 2025-10-08 08:59:45 +0200
Commit message:
Merge pull request #11 from estellad/vhdcell add tidyverse to DESCRIPTION, needed in VHD chapter
Package: OSTA
Commit: 55c954f59252d1b6c77c1fff2844ee3c3a8c81d2
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-08 08:59:02 +0200
Commit message:
Commit: 55c954f59252d1b6c77c1fff2844ee3c3a8c81d2
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-08 08:59:02 +0200
Commit message:
add tidyverse to DESCRIPTION, needed in VHD chapter
Package: OSTA
Commit: 365ba307ad8de7fd63c2884c6e264d3f0e96228c
Author: Estella Yixing Dong <estelladong729@gmail.com>
Date: 2025-10-07 17:52:09 +0200
Commit message:
Commit: 365ba307ad8de7fd63c2884c6e264d3f0e96228c
Author: Estella Yixing Dong <estelladong729@gmail.com>
Date: 2025-10-07 17:52:09 +0200
Commit message:
Merge pull request #10 from estellad/vhdcell Vhdcell
Package: OSTA
Commit: 33c20d075cf9d5e92852a9ea3e2c90cf8d6abf20
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-07 17:50:00 +0200
Commit message:
Commit: 33c20d075cf9d5e92852a9ea3e2c90cf8d6abf20
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-07 17:50:00 +0200
Commit message:
update plot title'
Package: OSTA
Commit: 58c1e56d42097ca46b116c0d04532e6c4b723c24
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-07 17:48:27 +0200
Commit message:
Commit: 58c1e56d42097ca46b116c0d04532e6c4b723c24
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-07 17:48:27 +0200
Commit message:
update VHD workflow and add link to workshop
Package: OSTA
Commit: 73cef1e81378e083ec5cc498cf48dddf7ea99a13
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-07 11:53:20 +0200
Commit message:
Commit: 73cef1e81378e083ec5cc498cf48dddf7ea99a13
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-07 11:53:20 +0200
Commit message:
Merge branch 'sandbox' into vhdcell updates from last night
Package: OSTA
Commit: e8a7b423b0bbdddf6ac82513eb33c0d2533c0f0f
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-07 11:52:37 +0200
Commit message:
Commit: e8a7b423b0bbdddf6ac82513eb33c0d2533c0f0f
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-07 11:52:37 +0200
Commit message:
resolve conflicts
Package: OSTA
Commit: f286822c59f388be220700e875aca31878ec9e5a
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-07 11:40:39 +0200
Commit message:
Commit: f286822c59f388be220700e875aca31878ec9e5a
Author: estellad <estelladong729@gmail.com>
Date: 2025-10-07 11:40:39 +0200
Commit message:
changes so far
Package: OSTA
Commit: 43cac8af41238863027a4786a417dbcfadf67a4b
Author: mjemons <martin.emons@gmail.com>
Date: 2025-10-06 11:17:25 +0200
Commit message:
Commit: 43cac8af41238863027a4786a417dbcfadf67a4b
Author: mjemons <martin.emons@gmail.com>
Date: 2025-10-06 11:17:25 +0200
Commit message:
adressing HLC review
Package: OSTA
Commit: 85e4ec8cb754516ccca075de486cf3f76da516ba
Author: mjemons <martin.emons@gmail.com>
Date: 2025-10-03 15:35:49 +0200
Commit message:
Commit: 85e4ec8cb754516ccca075de486cf3f76da516ba
Author: mjemons <martin.emons@gmail.com>
Date: 2025-10-03 15:35:49 +0200
Commit message:
new version of spatialFDA
Package: OSTA
Commit: 2a9df5b2452ee755129718f57eb33e87208ec838
Author: estellad <estelladong729@gmail.com>
Date: 2025-07-20 18:33:27 +0200
Commit message:
Commit: 2a9df5b2452ee755129718f57eb33e87208ec838
Author: estellad <estelladong729@gmail.com>
Date: 2025-07-20 18:33:27 +0200
Commit message:
initiate PR for VHD cell
Package: SpiecEasi
Commit: a8c24b7c65114332bee0049b545112f961511681
Author: Zachary Kurtz <zdkurtz@gmail.com>
Date: 2025-10-16 13:41:51 -0400
Commit message:
Commit: a8c24b7c65114332bee0049b545112f961511681
Author: Zachary Kurtz <zdkurtz@gmail.com>
Date: 2025-10-16 13:41:51 -0400
Commit message:
Bump version: 1.99.1 → 1.99.2
Package: AnnotationForge
Commit: d5a6cb0c621a5ccfddac6a8e8c3e368c00fc5cdc
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-10-16 10:30:44 -0400
Commit message:
Commit: d5a6cb0c621a5ccfddac6a8e8c3e368c00fc5cdc
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-10-16 10:30:44 -0400
Commit message:
Update viableID for release
Package: MetaboAnnotation
Commit: 4df51a54c95b1cb5a9e43fa8fcdeffeb4aaa4928
Author: Johannes Rainer <5506112+jorainer@users.noreply.github.com>
Date: 2025-10-16 14:26:18 +0200
Commit message:
Commit: 4df51a54c95b1cb5a9e43fa8fcdeffeb4aaa4928
Author: Johannes Rainer <5506112+jorainer@users.noreply.github.com>
Date: 2025-10-16 14:26:18 +0200
Commit message:
Merge pull request #127 from rformassspectrometry/jomain docs: extend documentation for use of external similarity functions
Package: MetaboAnnotation
Commit: e54809a02debc21032e717155c6ee900a9f228b7
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-10-16 14:05:45 +0200
Commit message:
Commit: e54809a02debc21032e717155c6ee900a9f228b7
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-10-16 14:05:45 +0200
Commit message:
docs: fix vignette
Package: MetaboAnnotation
Commit: 34c65dcb730e1214e4ab881f13f327d44b45c5a2
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-10-16 13:58:02 +0200
Commit message:
Commit: 34c65dcb730e1214e4ab881f13f327d44b45c5a2
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-10-16 13:58:02 +0200
Commit message:
docs: extend documentation for use of external similarity functions - related to issue #126: expand the documentation of `CompareSpectraParam()` and add examples to the vignette describing how e.g. *msentropy* spectra similarity calculations can be used instead of the default.
Package: VariantAnnotation
Commit: af7ae49722281222e133cda7262aba4bfd6ade3f
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-10-16 09:31:22 -0400
Commit message:
Commit: af7ae49722281222e133cda7262aba4bfd6ade3f
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-10-16 09:31:22 -0400
Commit message:
improving unit tests for 3.22
Package: Ibex
Commit: 45b94558e9ac03a08d3ae9faedee52762bef23eb
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-16 08:15:53 -0500
Commit message:
Commit: 45b94558e9ac03a08d3ae9faedee52762bef23eb
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-16 08:15:53 -0500
Commit message:
Merge branch 'main' into devel Fixing Herve deletion of data?
Package: Ibex
Commit: 189dde33623b385e0bb42c55a8c5715e2a38a3c1
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-16 08:15:33 -0500
Commit message:
Commit: 189dde33623b385e0bb42c55a8c5715e2a38a3c1
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-16 08:15:33 -0500
Commit message:
Update DESCRIPTION
Package: Ibex
Commit: f1e558327e22b6d218d0dca049816703a9365fba
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-13 09:11:53 -0500
Commit message:
Commit: f1e558327e22b6d218d0dca049816703a9365fba
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-13 09:11:53 -0500
Commit message:
Update README.md
Package: Ibex
Commit: 778ab54efcb9df903834a9f60e3ef2e15bed1ae4
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-13 09:11:33 -0500
Commit message:
Commit: 778ab54efcb9df903834a9f60e3ef2e15bed1ae4
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-13 09:11:33 -0500
Commit message:
Update README.md
Package: omicsGMF
Commit: 95d60268ff62e3f0029e33c6bc6ecffddc6ae5a4
Author: Alexandre Segers <alexandre.segers@ugent.be>
Date: 2025-10-16 15:07:41 +0200
Commit message:
Commit: 95d60268ff62e3f0029e33c6bc6ecffddc6ae5a4
Author: Alexandre Segers <alexandre.segers@ugent.be>
Date: 2025-10-16 15:07:41 +0200
Commit message:
update vignette and testthat with smaller mock data
Package: Ibex
Commit: c225504fa63a61ecb6a950807c67c00bf64e4b13
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-16 07:58:43 -0500
Commit message:
Commit: c225504fa63a61ecb6a950807c67c00bf64e4b13
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-16 07:58:43 -0500
Commit message:
Update DESCRIPTION
Package: Ibex
Commit: 4701bfa1c040364bfb649efa32610a6bf008652c
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-16 07:57:27 -0500
Commit message:
Commit: 4701bfa1c040364bfb649efa32610a6bf008652c
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-16 07:57:27 -0500
Commit message:
Merge branch 'devel' of git.bioconductor.org:packages/Ibex into devel
Package: Ibex
Commit: e7730df19a3873598c8f66bd2674ca17dabc8f50
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-01 08:03:08 -0500
Commit message:
Commit: e7730df19a3873598c8f66bd2674ca17dabc8f50
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-01 08:03:08 -0500
Commit message:
Merge branch 'main' into devel refining description
Package: Ibex
Commit: fa4c4461ff7658b4a47e80f25a2d9b50992ae0f7
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-01 08:02:14 -0500
Commit message:
Commit: fa4c4461ff7658b4a47e80f25a2d9b50992ae0f7
Author: theHumanBorch <ncborch@gmail.com>
Date: 2025-10-01 08:02:14 -0500
Commit message:
v1.0.0
Package: MsBackendSql
Commit: 7b77a0c2d57e3bdc9cd5808cd70c0826d990330e
Author: Johannes Rainer <5506112+jorainer@users.noreply.github.com>
Date: 2025-10-16 13:59:26 +0200
Commit message:
Commit: 7b77a0c2d57e3bdc9cd5808cd70c0826d990330e
Author: Johannes Rainer <5506112+jorainer@users.noreply.github.com>
Date: 2025-10-16 13:59:26 +0200
Commit message:
Merge pull request #30 from rformassspectrometry/jomain Jomain
Package: MsBackendSql
Commit: 65743e58ac378d62d55fc4cf7887381ce4ded87b
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-10-16 10:18:18 +0200
Commit message:
Commit: 65743e58ac378d62d55fc4cf7887381ce4ded87b
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-10-16 10:18:18 +0200
Commit message:
refactor: small performance improvements for longForm
Package: MsBackendSql
Commit: cec005c18e731619b33f445db7e6b301e24717a9
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-10-14 06:24:52 +0200
Commit message:
Commit: cec005c18e731619b33f445db7e6b301e24717a9
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-10-14 06:24:52 +0200
Commit message:
refactor: small performance improvements for longForm
Package: epiregulon
Commit: bfee05dc0256715d2681815a4b3fb1515160d19f
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 11:53:30 +0000
Commit message:
Commit: bfee05dc0256715d2681815a4b3fb1515160d19f
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 11:53:30 +0000
Commit message:
v1.99.1
Package: epiregulon
Commit: d185d291ad993f96013836a6040acd143019f1e7
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 10:21:05 +0000
Commit message:
Commit: d185d291ad993f96013836a6040acd143019f1e7
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 10:21:05 +0000
Commit message:
handle clusters being a list
Package: epiregulon
Commit: 68ed86a8f0ab0131e7c15549e4c889a1b294d57e
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 10:20:27 +0000
Commit message:
Commit: 68ed86a8f0ab0131e7c15549e4c889a1b294d57e
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 10:20:27 +0000
Commit message:
handle clusters NULL
Package: epiregulon
Commit: c9030479e5fee47eb472cdd69fe1264caffae4fe
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 10:18:27 +0000
Commit message:
Commit: c9030479e5fee47eb472cdd69fe1264caffae4fe
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 10:18:27 +0000
Commit message:
fixing GitHub issue #44
Package: OrganismDbi
Commit: fb8673c5fd3e38dc457970bbef4b2b070b6a8b0b
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-10-16 07:44:02 -0400
Commit message:
Commit: fb8673c5fd3e38dc457970bbef4b2b070b6a8b0b
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-10-16 07:44:02 -0400
Commit message:
increased a length threshold for exon extraction test
Package: TFEA.ChIP
Commit: 9fb694f92ff74dedb264f66f7d7984b0f9d6ccd1
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-10-16 12:48:44 +0200
Commit message:
Commit: 9fb694f92ff74dedb264f66f7d7984b0f9d6ccd1
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-10-16 12:48:44 +0200
Commit message:
fixed version number
Package: TFEA.ChIP
Commit: 91245df689ef6ffa5b586e750745f0e62d5344a3
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-10-14 15:16:14 +0200
Commit message:
Commit: 91245df689ef6ffa5b586e750745f0e62d5344a3
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-10-14 15:16:14 +0200
Commit message:
fixed preprocessing part2
Package: TFEA.ChIP
Commit: cb7ece631b61b4aaf2900706c8bc6a16ea1561dc
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-10-14 12:49:08 +0200
Commit message:
Commit: cb7ece631b61b4aaf2900706c8bc6a16ea1561dc
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-10-14 12:49:08 +0200
Commit message:
fixed preprocessing
Package: epiregulon.extra
Commit: fd774546c8d4d825ade1037a44693ccb04ffee9c
Author: Tomasz Włodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 10:11:40 +0000
Commit message:
Commit: fd774546c8d4d825ade1037a44693ccb04ffee9c
Author: Tomasz Włodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 10:11:40 +0000
Commit message:
v1.5.1
Package: epiregulon.extra
Commit: f67de745e39d567444301ddac96e8ff47cee6b91
Author: Tomasz Włodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 10:11:21 +0000
Commit message:
Commit: f67de745e39d567444301ddac96e8ff47cee6b91
Author: Tomasz Włodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-16 10:11:21 +0000
Commit message:
removal of plot test and regulon update
Package: topdownr
Commit: 3cf1c5dbdce4669bae581824f7200b7d80a87797
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2025-10-16 11:52:36 +0200
Commit message:
Commit: 3cf1c5dbdce4669bae581824f7200b7d80a87797
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2025-10-16 11:52:36 +0200
Commit message:
docs: fix download shield
Package: topdownrdata
Commit: ee1276a5f0dbde5adf178578fd5e494f85aee239
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2025-10-16 11:50:26 +0200
Commit message:
Commit: ee1276a5f0dbde5adf178578fd5e494f85aee239
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2025-10-16 11:50:26 +0200
Commit message:
chore: move to codeberg.org
Package: topdownr
Commit: 5f498e96bd4b3c9b31be4bf35e1cea3faa181a00
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2025-10-16 11:46:40 +0200
Commit message:
Commit: 5f498e96bd4b3c9b31be4bf35e1cea3faa181a00
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2025-10-16 11:46:40 +0200
Commit message:
chore: move to codeberg.org
Package: anndataR
Commit: a95ccf9a976ecc08f56ae50b5b918fba35f6ff10
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-10-16 10:51:29 +0200
Commit message:
Commit: a95ccf9a976ecc08f56ae50b5b918fba35f6ff10
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-10-16 10:51:29 +0200
Commit message:
Address Bioconductor check issues (#371) * Combine opts_chunks$set() on usage_python vignette * Replace dontrun with donttest in man pages * Fix format in AbstractAnnData-s3methods example * Fix typo in example format * Remove example from internal as_HDF5AnnData docs * Update NEWS * Bump devel version
Package: stPipe
Commit: c0b834c7e1106937ced402efe4d770119ae0cdae
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-10-16 18:23:29 +1100
Commit message:
Commit: c0b834c7e1106937ced402efe4d770119ae0cdae
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-10-16 18:23:29 +1100
Commit message:
Remove exclude-lib in Makevars, update version.
Package: stPipe
Commit: bc4088b7a54f90e6b73ae38bdb1efea086272b0a
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-10-16 18:22:34 +1100
Commit message:
Commit: bc4088b7a54f90e6b73ae38bdb1efea086272b0a
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-10-16 18:22:34 +1100
Commit message:
Remove exclude-lib in Makevars
Package: MSstats
Commit: f3ab58f73f50f2416791b1e2f1b49d27afff2185
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2025-10-16 09:07:39 +0200
Commit message:
Commit: f3ab58f73f50f2416791b1e2f1b49d27afff2185
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2025-10-16 09:07:39 +0200
Commit message:
version bump
Package: MSstats
Commit: ef3c81a3a11c562470d62240132c60da094f77fc
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-10-15 13:04:53 -0400
Commit message:
Commit: ef3c81a3a11c562470d62240132c60da094f77fc
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-10-15 13:04:53 -0400
Commit message:
Update NEWS.rd for version 4.18.0 release Added new features and updates for version 4.18.0, including MSstats+ functionalities and updates to dataProcess and groupComparison functions.
Package: MSstats
Commit: 64058e37420316dfa62ce6db7fd752d1d4cd7326
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-09-30 09:48:54 -0400
Commit message:
Commit: 64058e37420316dfa62ce6db7fd752d1d4cd7326
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-09-30 09:48:54 -0400
Commit message:
fix(dataProcessPlots, groupComparisonPlots): Migrate away from deprecated functions for ggplot (#175)
Package: MSstats
Commit: d71faa385bdc15d14460761ec8fa175ad394abcc
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-09-19 09:36:19 -0400
Commit message:
Commit: d71faa385bdc15d14460761ec8fa175ad394abcc
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-09-19 09:36:19 -0400
Commit message:
Change license from MIT to Artistic License 2.0
Package: MSstats
Commit: f502591493eb693d5887ac5ea2364d0bb79d18a9
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-09-18 10:07:45 -0400
Commit message:
Commit: f502591493eb693d5887ac5ea2364d0bb79d18a9
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-09-18 10:07:45 -0400
Commit message:
Add MIT License to the project
Package: MSstats
Commit: fea8488ec232c32a166420edbf24f309645016fc
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-09-10 15:27:16 -0400
Commit message:
Commit: fea8488ec232c32a166420edbf24f309645016fc
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-09-10 15:27:16 -0400
Commit message:
Merge pull request #174 from Vitek-Lab/feature-model_weights Feature model weights
Package: MSstats
Commit: 5b972e7529330cbd0394168c2b22a8a5c2d55426
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-09-10 15:26:26 -0400
Commit message:
Commit: 5b972e7529330cbd0394168c2b22a8a5c2d55426
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-09-10 15:26:26 -0400
Commit message:
minor text edits to msstatsplus vignette
Package: MSstats
Commit: beecaaec8db429b8b00e396b3c3c437633e85d0d
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-09-09 12:59:57 -0400
Commit message:
Commit: beecaaec8db429b8b00e396b3c3c437633e85d0d
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-09-09 12:59:57 -0400
Commit message:
merge with changes in devel
Package: MSstats
Commit: dcdfd780a1c40430f83831ba0ba0042ff35ae116
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-09-09 15:39:32 +0200
Commit message:
Commit: dcdfd780a1c40430f83831ba0ba0042ff35ae116
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-09-09 15:39:32 +0200
Commit message:
Merge pull request #173 from Vitek-Lab/tony-feature-model_weights test(anomaly_scores): Add unit tests for dataProcess and groupComparison for anomaly score feature
Package: MSstats
Commit: 8479d2876832845237b542c7c3963a0811bbd254
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-09-09 15:38:03 +0200
Commit message:
Commit: 8479d2876832845237b542c7c3963a0811bbd254
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2025-09-09 15:38:03 +0200
Commit message:
Merge pull request #169 from Vitek-Lab/feature-DataProcess_defaults changed default to topN with 100 features
Package: MSstats
Commit: c1403628766ed6787880e3baaa6a94ee8f1fc540
Author: Tony Wu <wu.anthon@northeastern.edu>
Date: 2025-09-08 11:58:30 -0400
Commit message:
Commit: c1403628766ed6787880e3baaa6a94ee8f1fc540
Author: Tony Wu <wu.anthon@northeastern.edu>
Date: 2025-09-08 11:58:30 -0400
Commit message:
Add more granular unit tests for data summarization subfunctions
Package: MSstats
Commit: c71c16c4aafedb8fef3f2b8fd57b3567cb53cc54
Author: Tony Wu <wu.anthon@northeastern.edu>
Date: 2025-09-05 15:57:32 -0400
Commit message:
Commit: c71c16c4aafedb8fef3f2b8fd57b3567cb53cc54
Author: Tony Wu <wu.anthon@northeastern.edu>
Date: 2025-09-05 15:57:32 -0400
Commit message:
add defaults for aft_iterations parameter to prevent Shiny from breaking
Package: MSstats
Commit: 3a184ca590eed5bbd4fb27dd4391c200227697f3
Author: Tony Wu <wu.anthon@northeastern.edu>
Date: 2025-08-26 16:58:44 -0400
Commit message:
Commit: 3a184ca590eed5bbd4fb27dd4391c200227697f3
Author: Tony Wu <wu.anthon@northeastern.edu>
Date: 2025-08-26 16:58:44 -0400
Commit message:
test(anomaly_scores): Add unit tests for dataProcess and groupComparison for anomaly score feature
Package: MSstats
Commit: b42eaffcfe330bca9c39d3f91eb8a15a8fc76a67
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-08-26 15:07:05 -0400
Commit message:
Commit: b42eaffcfe330bca9c39d3f91eb8a15a8fc76a67
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-08-26 15:07:05 -0400
Commit message:
style(countMissingPercentage): Fix styling of arrows to equal signs (#172)
Package: MSstats
Commit: 8c137efe4630c459b4f9b5d9472f4ad41b736e4a
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-08-26 14:26:01 -0400
Commit message:
Commit: 8c137efe4630c459b4f9b5d9472f4ad41b736e4a
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-08-26 14:26:01 -0400
Commit message:
fix(groupcomparison): Fix .countMissingPercentage for custom contrast matrices (#171)
Package: MSstats
Commit: e019a9a3c5cff10935ca546f649773fd69190628
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-08-05 08:59:53 -0400
Commit message:
Commit: e019a9a3c5cff10935ca546f649773fd69190628
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-08-05 08:59:53 -0400
Commit message:
MSstatsBig example
Package: MSstats
Commit: 7ffce0f98beaeb7886b335c431b703c9d32d917c
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-28 09:47:39 -0400
Commit message:
Commit: 7ffce0f98beaeb7886b335c431b703c9d32d917c
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-28 09:47:39 -0400
Commit message:
changed default to topN with 100 features
Package: MSstats
Commit: f7a957b66c45d021e7946ae61385382edcfb2cb7
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-25 11:40:53 -0400
Commit message:
Commit: f7a957b66c45d021e7946ae61385382edcfb2cb7
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-25 11:40:53 -0400
Commit message:
documentation bugs
Package: MSstats
Commit: be2a8d6c2b821e0d3fc2ce0b88f0f82e828edc32
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-25 11:40:16 -0400
Commit message:
Commit: be2a8d6c2b821e0d3fc2ce0b88f0f82e828edc32
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-25 11:40:16 -0400
Commit message:
added manual converter example
Package: MSstats
Commit: aa3f5b0170d69bacf9e1fe76ea525f2fbc77704a
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-16 12:23:53 -0400
Commit message:
Commit: aa3f5b0170d69bacf9e1fe76ea525f2fbc77704a
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-16 12:23:53 -0400
Commit message:
MSstats+ vignette
Package: MSstats
Commit: 5aff1097827989a376a2825bdda2e8f48e98714e
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-15 09:12:35 -0400
Commit message:
Commit: 5aff1097827989a376a2825bdda2e8f48e98714e
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-15 09:12:35 -0400
Commit message:
bug fix
Package: MSstats
Commit: 323a9bc6e00bd8a726115eb1d9dc3cf7ca0509f6
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-09 10:55:27 -0400
Commit message:
Commit: 323a9bc6e00bd8a726115eb1d9dc3cf7ca0509f6
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-09 10:55:27 -0400
Commit message:
lm model
Package: MSstats
Commit: 2978d1824eb86ebc96c03b235fe098d479d12ec6
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-09 10:54:35 -0400
Commit message:
Commit: 2978d1824eb86ebc96c03b235fe098d479d12ec6
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-07-09 10:54:35 -0400
Commit message:
minor bug fixes
Package: MSstats
Commit: 8ee6fd58c671228b4395e0c7ad5bbddb71c689aa
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-05-13 08:42:19 -0400
Commit message:
Commit: 8ee6fd58c671228b4395e0c7ad5bbddb71c689aa
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-05-13 08:42:19 -0400
Commit message:
testing remove pca
Package: MSstats
Commit: e14d87196ecff73e5450b9a93a748bd37857d4ad
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-05-12 22:21:39 -0400
Commit message:
Commit: e14d87196ecff73e5450b9a93a748bd37857d4ad
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-05-12 22:21:39 -0400
Commit message:
bug fix
Package: MSstats
Commit: 1b3c60f0008cb599a0e6caa5b3f04a563504f793
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-05-09 10:34:00 -0400
Commit message:
Commit: 1b3c60f0008cb599a0e6caa5b3f04a563504f793
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-05-09 10:34:00 -0400
Commit message:
Merge branch 'feature-model_weights' of https://github.com/Vitek-Lab/MSstats into feature-model_weights
Package: MSstats
Commit: 4655736c4fa982a22d70bb55fe8481566ab79911
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-05-09 10:33:28 -0400
Commit message:
Commit: 4655736c4fa982a22d70bb55fe8481566ab79911
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-05-09 10:33:28 -0400
Commit message:
anomaly score to column validator
Package: MSstats
Commit: 56dd6208ff391d843133970fd5c40fee851a8b6f
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-05-09 10:23:39 -0400
Commit message:
Commit: 56dd6208ff391d843133970fd5c40fee851a8b6f
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-05-09 10:23:39 -0400
Commit message:
imputation convergence bug
Package: MSstats
Commit: bb7ca0158826fc995fde59ce67e8decb2e52cdd5
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-04-29 17:47:25 -0400
Commit message:
Commit: bb7ca0158826fc995fde59ce67e8decb2e52cdd5
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-04-29 17:47:25 -0400
Commit message:
fixed anomaly bug
Package: MSstats
Commit: 1574fd93fbdb4b38e224b564e55fa1389d7da479
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-04-15 12:23:30 -0400
Commit message:
Commit: 1574fd93fbdb4b38e224b564e55fa1389d7da479
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-04-15 12:23:30 -0400
Commit message:
anomaly scores into summaraization and model
Package: MSstats
Commit: 89c031ed2dacde6ff07d334c7146e5a035397f78
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-04-13 14:42:36 -0400
Commit message:
Commit: 89c031ed2dacde6ff07d334c7146e5a035397f78
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-04-13 14:42:36 -0400
Commit message:
anomaly weighted summarization
Package: MSstats
Commit: c0a8ac64cb3f1c5584e75a1137c091a02dd163e5
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-04-13 10:59:43 -0400
Commit message:
Commit: c0a8ac64cb3f1c5584e75a1137c091a02dd163e5
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-04-13 10:59:43 -0400
Commit message:
adding anomaly scores to dataProcess
Package: MSstats
Commit: 35747e92db3277d245ee744503c2a6ecb81c5f9b
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-04-04 08:53:35 -0400
Commit message:
Commit: 35747e92db3277d245ee744503c2a6ecb81c5f9b
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2025-04-04 08:53:35 -0400
Commit message:
added weights to groupComparison
Package: MAST
Commit: dc79813cf3cb0ff9116a90a5b1ce799c2ac47454
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2025-10-16 00:05:31 -0700
Commit message:
Commit: dc79813cf3cb0ff9116a90a5b1ce799c2ac47454
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2025-10-16 00:05:31 -0700
Commit message:
bump version and update Authors@R
Package: miRspongeR
Commit: 5928b35f6b3517cc35c6e8b39abee57b18c1570e
Author: zhangjunpeng411 <zhangjunpeng_411@yahoo.com>
Date: 2025-10-16 12:30:26 +0800
Commit message:
Commit: 5928b35f6b3517cc35c6e8b39abee57b18c1570e
Author: zhangjunpeng411 <zhangjunpeng_411@yahoo.com>
Date: 2025-10-16 12:30:26 +0800
Commit message:
UPDATE
Package: miRspongeR
Commit: edd558bdb2f818e10a74107f2882e3527c8d4597
Author: zhangjunpeng411 <zhangjunpeng_411@yahoo.com>
Date: 2025-06-19 11:30:12 +0800
Commit message:
Commit: edd558bdb2f818e10a74107f2882e3527c8d4597
Author: zhangjunpeng411 <zhangjunpeng_411@yahoo.com>
Date: 2025-06-19 11:30:12 +0800
Commit message:
Update
Package: gVenn
Commit: 50318aa884d853b54a716c51d1e09581fb4fbdb7
Author: Christophe Tav <christophe.tav@gmail.com>
Date: 2025-10-15 23:57:54 -0400
Commit message:
Commit: 50318aa884d853b54a716c51d1e09581fb4fbdb7
Author: Christophe Tav <christophe.tav@gmail.com>
Date: 2025-10-15 23:57:54 -0400
Commit message:
feat: add color customization to plotUpSet()
Package: CBN2Path
Commit: ebd971d0b14fe6a4d923f7c38d8efc0f6d953f7c
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 22:41:46 -0500
Commit message:
Commit: ebd971d0b14fe6a4d923f7c38d8efc0f6d953f7c
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 22:41:46 -0500
Commit message:
bump
Package: CBN2Path
Commit: 0f39a8c7a9cb0174db2ef684b038071741e2f733
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 22:41:00 -0500
Commit message:
Commit: 0f39a8c7a9cb0174db2ef684b038071741e2f733
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 22:41:00 -0500
Commit message:
faster example cases
Package: CBN2Path
Commit: 6e01abdbd3653f4d18c37eb7080702d6bc1fea2d
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 21:00:56 -0500
Commit message:
Commit: 6e01abdbd3653f4d18c37eb7080702d6bc1fea2d
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 21:00:56 -0500
Commit message:
fix issue with doc
Package: CBN2Path
Commit: 71b4f21fc0d97cd7b538aad8068e1e39b4120168
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 20:56:22 -0500
Commit message:
Commit: 71b4f21fc0d97cd7b538aad8068e1e39b4120168
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 20:56:22 -0500
Commit message:
just bump
Package: CBN2Path
Commit: a80d286bd181514ac50b94f11c4e1c3fe339429c
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 20:46:47 -0500
Commit message:
Commit: a80d286bd181514ac50b94f11c4e1c3fe339429c
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 20:46:47 -0500
Commit message:
trying to fix issues
Package: CBN2Path
Commit: b47efd3ee1bb00b9a1e305513454f10febff4856
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 20:36:26 -0500
Commit message:
Commit: b47efd3ee1bb00b9a1e305513454f10febff4856
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 20:36:26 -0500
Commit message:
still trying to reduce example times and small fix to imports
Package: CAGEr
Commit: 679bef9fe755f3ac305674b5c97f4d17bda02ff9
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-14 18:35:27 +0900
Commit message:
Commit: 679bef9fe755f3ac305674b5c97f4d17bda02ff9
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-14 18:35:27 +0900
Commit message:
Merge pull request #136 from charles-plessy/prepare_2.16.0 Prepare the 2.16.0 release.
Package: CAGEr
Commit: 569c9c7efcb81234b0d7c517f1b1b52f1d8248c5
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-14 09:28:53 +0900
Commit message:
Commit: 569c9c7efcb81234b0d7c517f1b1b52f1d8248c5
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-14 09:28:53 +0900
Commit message:
Better document where the alpha value is saved.
Package: CAGEr
Commit: af9fca14ca0a94b28f5877f926a3f939b41b83d8
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-14 09:28:18 +0900
Commit message:
Commit: af9fca14ca0a94b28f5877f926a3f939b41b83d8
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-14 09:28:18 +0900
Commit message:
Add Katalin to the contributors
Package: CAGEr
Commit: 9e48cd0b83cc73757b9f22ee8c91ac784aeb3e67
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-14 09:24:30 +0900
Commit message:
Commit: 9e48cd0b83cc73757b9f22ee8c91ac784aeb3e67
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-14 09:24:30 +0900
Commit message:
Thighten the dependency on ggplot2 This is because we use the `@` S7 accessor.
Package: CAGEr
Commit: 7f1d69ceb1ed404312e715b9e262a148fe798272
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-10 13:45:42 +0900
Commit message:
Commit: 7f1d69ceb1ed404312e715b9e262a148fe798272
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-10 13:45:42 +0900
Commit message:
Prepare the 2.16.0 release.
Package: CAGEr
Commit: 8ed25656b5690e963bdd3809194ac191a595fee4
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-10 11:54:34 +0900
Commit message:
Commit: 8ed25656b5690e963bdd3809194ac191a595fee4
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-10 11:54:34 +0900
Commit message:
Roxygen
Package: CAGEr
Commit: d3552c2f14fe0baede6a9deec0ce66a9aac07454
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-10 11:54:09 +0900
Commit message:
Commit: d3552c2f14fe0baede6a9deec0ce66a9aac07454
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-10 11:54:09 +0900
Commit message:
Put Matrix::rowSums in the NAMESPACE
Package: CAGEr
Commit: 23f4e8385d2995130164a9d2056c4dd5291a88fe
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-10 11:51:32 +0900
Commit message:
Commit: 23f4e8385d2995130164a9d2056c4dd5291a88fe
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-10 11:51:32 +0900
Commit message:
Merge pull request #128 from ferenckata/export_tss CAGEfightR enhancer calling extension
Package: CAGEr
Commit: 1d112549d7fff4f30f014781f93fe1af0f74f907
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 15:33:11 +0200
Commit message:
Commit: 1d112549d7fff4f30f014781f93fe1af0f74f907
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 15:33:11 +0200
Commit message:
or just be explicit
Package: CAGEr
Commit: 95592116fc1f809d9c143a79a17f742905d04aef
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 15:32:22 +0200
Commit message:
Commit: 95592116fc1f809d9c143a79a17f742905d04aef
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 15:32:22 +0200
Commit message:
be very explicit
Package: CAGEr
Commit: 73a135cb76e340523be7ef6d81ce7f64a23d5c6f
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 15:31:35 +0200
Commit message:
Commit: 73a135cb76e340523be7ef6d81ce7f64a23d5c6f
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 15:31:35 +0200
Commit message:
fix bug, add new issue
Package: CAGEr
Commit: 6a719c176cfd7def15cdff593cda4d1ef203d93d
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 10:48:38 +0200
Commit message:
Commit: 6a719c176cfd7def15cdff593cda4d1ef203d93d
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 10:48:38 +0200
Commit message:
debugging
Package: CAGEr
Commit: fb7ded494d97f0a0332f9e687c51e8c2c43d47be
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 09:18:35 +0200
Commit message:
Commit: fb7ded494d97f0a0332f9e687c51e8c2c43d47be
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 09:18:35 +0200
Commit message:
debugging on runner
Package: CAGEr
Commit: 4108ca526150babd05079a368d09ec73d5850c2d
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 08:42:01 +0200
Commit message:
Commit: 4108ca526150babd05079a368d09ec73d5850c2d
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-09 08:42:01 +0200
Commit message:
fix rowSums as suggested
Package: CAGEr
Commit: bfcfa8b296122f87db90d3a469f90e961d4490df
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-07 09:30:15 +0200
Commit message:
Commit: bfcfa8b296122f87db90d3a469f90e961d4490df
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-07 09:30:15 +0200
Commit message:
adding name
Package: CAGEr
Commit: 07470129112ba094f223033ebabbfcc361cc059f
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-07 09:27:23 +0200
Commit message:
Commit: 07470129112ba094f223033ebabbfcc361cc059f
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-07 09:27:23 +0200
Commit message:
addressing comment about both tpm and count assay, tested alrigth now
Package: CAGEr
Commit: 001cce72c0deaaf571956c90e4ebcf7545e70632
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 16:04:46 +0200
Commit message:
Commit: 001cce72c0deaaf571956c90e4ebcf7545e70632
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 16:04:46 +0200
Commit message:
butofcourse, renaming leads to renaming
Package: CAGEr
Commit: 847e090808d2a36fc05fa6bd4a9d316f51233ce7
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 15:58:19 +0200
Commit message:
Commit: 847e090808d2a36fc05fa6bd4a9d316f51233ce7
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 15:58:19 +0200
Commit message:
fix confusion with assay/assays
Package: CAGEr
Commit: d5b1cb962abbbe37fd56672da5387f5ecdda00ed
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 15:21:46 +0200
Commit message:
Commit: d5b1cb962abbbe37fd56672da5387f5ecdda00ed
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 15:21:46 +0200
Commit message:
fixing according to error message
Package: CAGEr
Commit: 30bc6a876e7842944d4f946dd5b569b8deb27dd2
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 15:13:29 +0200
Commit message:
Commit: 30bc6a876e7842944d4f946dd5b569b8deb27dd2
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 15:13:29 +0200
Commit message:
add score again
Package: CAGEr
Commit: efb07684c92a92b91d325339fd9d54979667c778
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 15:12:22 +0200
Commit message:
Commit: efb07684c92a92b91d325339fd9d54979667c778
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 15:12:22 +0200
Commit message:
remove unnecessary export, keep code for cagefightr interface in its function with tpm normalized assay
Package: CAGEr
Commit: 1548d40ef31dd7260769f11ca1c4b5d0b8b14847
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 10:34:43 +0200
Commit message:
Commit: 1548d40ef31dd7260769f11ca1c4b5d0b8b14847
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 10:34:43 +0200
Commit message:
update docs
Package: CAGEr
Commit: c2f85d8f865698885e15310d68e601e33434b1a5
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 10:30:35 +0200
Commit message:
Commit: c2f85d8f865698885e15310d68e601e33434b1a5
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 10:30:35 +0200
Commit message:
fix namespace
Package: CAGEr
Commit: b471bbab971ec6c60c40f1db2fc4ed4891833ad3
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 10:09:19 +0200
Commit message:
Commit: b471bbab971ec6c60c40f1db2fc4ed4891833ad3
Author: ferenckata <katagyik@gmail.com>
Date: 2025-10-06 10:09:19 +0200
Commit message:
addressing #128 #132 and #133
Package: CAGEr
Commit: 561dc3b1463b9884103b4834e523f9251fb62677
Author: Katalin Ferenc <35810660+ferenckata@users.noreply.github.com>
Date: 2025-10-03 14:34:15 +0200
Commit message:
Commit: 561dc3b1463b9884103b4834e523f9251fb62677
Author: Katalin Ferenc <35810660+ferenckata@users.noreply.github.com>
Date: 2025-10-03 14:34:15 +0200
Commit message:
Merge branch 'charles-plessy:devel' into export_tss
Package: CAGEr
Commit: 8d315a8d3a36a6cdabccd3c80142e111c5e1fc9f
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 16:28:55 +0900
Commit message:
Commit: 8d315a8d3a36a6cdabccd3c80142e111c5e1fc9f
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 16:28:55 +0900
Commit message:
Merge pull request #135 from charles-plessy/correlationMethodsBrushup Brushup of CorrelationMethods.R
Package: CAGEr
Commit: d45d35b86de89f2ed2c593c8847f75c35a062d96
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 10:38:42 +0900
Commit message:
Commit: d45d35b86de89f2ed2c593c8847f75c35a062d96
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 10:38:42 +0900
Commit message:
Fix namespace.
Package: CAGEr
Commit: 911d2d0a1643d321e289196576a3bbe87b9d7b2b
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 10:20:07 +0900
Commit message:
Commit: 911d2d0a1643d321e289196576a3bbe87b9d7b2b
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 10:20:07 +0900
Commit message:
Fix Error in if (samples == "all") { : the condition has length > 1
Package: CAGEr
Commit: 7fde537448761d7b57377315fce0fcfe69ea25bb
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 10:11:35 +0900
Commit message:
Commit: 7fde537448761d7b57377315fce0fcfe69ea25bb
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 10:11:35 +0900
Commit message:
Remove for loop and fix spelling Thanks to Copilot.
Package: CAGEr
Commit: c96f45933575dfe877cf324f7b8b9ab5c06af976
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 10:06:24 +0900
Commit message:
Commit: c96f45933575dfe877cf324f7b8b9ab5c06af976
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 10:06:24 +0900
Commit message:
Consolidate corVector in .correlationMatrix
Package: CAGEr
Commit: 2df62c58f8eaafa8a878874e2315e1c1d0c9f1a2
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 09:33:50 +0900
Commit message:
Commit: 2df62c58f8eaafa8a878874e2315e1c1d0c9f1a2
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-10-01 09:33:50 +0900
Commit message:
Consolidate calculateCorrelations into .correlationMatrix
Package: CAGEr
Commit: 642b01cb45aec8a8df2e96816a03da67e52f7dba
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-30 17:29:44 +0900
Commit message:
Commit: 642b01cb45aec8a8df2e96816a03da67e52f7dba
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-30 17:29:44 +0900
Commit message:
Streamline the setMethod statements. It required to move some code so that accessory functions are found.
Package: CAGEr
Commit: 6281fb4f33ce0b43ee5fda21a298f71f59c44174
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-30 13:27:11 +0900
Commit message:
Commit: 6281fb4f33ce0b43ee5fda21a298f71f59c44174
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-30 13:27:11 +0900
Commit message:
Consolidate documentation the correlationMatrix and plotCorrelation functions have a lot of arguments in common. Although the consolidation clutters the man page with redundant definitions, I prefer to factorise the parameter definitions
Package: CAGEr
Commit: c0d805691032e463e2966295593dce2bd1f83714
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-29 16:49:56 +0900
Commit message:
Commit: c0d805691032e463e2966295593dce2bd1f83714
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-29 16:49:56 +0900
Commit message:
Merge pull request #129 from ferenckata/correlation_heatmap Function to calculate correlation matrix
Package: CAGEr
Commit: 80f7e79675a8cf142d9fdadbf17e72fefb9298ca
Author: Katalin Ferenc <35810660+ferenckata@users.noreply.github.com>
Date: 2025-09-25 16:24:14 +0200
Commit message:
Commit: 80f7e79675a8cf142d9fdadbf17e72fefb9298ca
Author: Katalin Ferenc <35810660+ferenckata@users.noreply.github.com>
Date: 2025-09-25 16:24:14 +0200
Commit message:
Merge branch 'devel' into export_tss
Package: CAGEr
Commit: c64361c668adbf4201cdb037b062d9c7dad530eb
Author: Katalin Ferenc <35810660+ferenckata@users.noreply.github.com>
Date: 2025-09-25 16:23:36 +0200
Commit message:
Commit: c64361c668adbf4201cdb037b062d9c7dad530eb
Author: Katalin Ferenc <35810660+ferenckata@users.noreply.github.com>
Date: 2025-09-25 16:23:36 +0200
Commit message:
Merge branch 'devel' into correlation_heatmap
Package: CAGEr
Commit: dbcc4acbbf66b430961c6e0772b2f1ed03f0a0d1
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-22 10:46:42 +0900
Commit message:
Commit: dbcc4acbbf66b430961c6e0772b2f1ed03f0a0d1
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-22 10:46:42 +0900
Commit message:
Merge branch 'devel' of github.com:charles-plessy/CAGEr into devel
Package: CAGEr
Commit: 57bee5409aacbe8bb76a8f3e664eac814947328f
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-22 10:27:22 +0900
Commit message:
Commit: 57bee5409aacbe8bb76a8f3e664eac814947328f
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-22 10:27:22 +0900
Commit message:
Merge pull request #130 from ferenckata/automatic_alpha_passing Store power law parameters in the plot's metadata
Package: CAGEr
Commit: bf1a3e49fa8b40b1cc8e716e8482aeae37a5dc45
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-22 10:21:37 +0900
Commit message:
Commit: bf1a3e49fa8b40b1cc8e716e8482aeae37a5dc45
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-22 10:21:37 +0900
Commit message:
Minor documentation fixes.
Package: CAGEr
Commit: 9a35af0cb753761c036bdc32abd958f8fdaf2cec
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-22 09:38:17 +0900
Commit message:
Commit: 9a35af0cb753761c036bdc32abd958f8fdaf2cec
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-22 09:38:17 +0900
Commit message:
devtools::document()
Package: CAGEr
Commit: ed8fcc1a38b2ac6d1ae8dee927c54e025b489405
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-22 09:31:48 +0900
Commit message:
Commit: ed8fcc1a38b2ac6d1ae8dee927c54e025b489405
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-22 09:31:48 +0900
Commit message:
Documentation fixes and improvements.
Package: CAGEr
Commit: 159977bfe24c75c9bf9451173ee0b21c90fdb92c
Author: Katalin Ferenc <35810660+ferenckata@users.noreply.github.com>
Date: 2025-09-19 11:24:42 +0200
Commit message:
Commit: 159977bfe24c75c9bf9451173ee0b21c90fdb92c
Author: Katalin Ferenc <35810660+ferenckata@users.noreply.github.com>
Date: 2025-09-19 11:24:42 +0200
Commit message:
Merge branch 'devel' into export_tss
Package: CAGEr
Commit: b28a7cc0d921dc1a110c928b0f4a61d8fd571a97
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 11:23:11 +0200
Commit message:
Commit: b28a7cc0d921dc1a110c928b0f4a61d8fd571a97
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 11:23:11 +0200
Commit message:
update docs
Package: CAGEr
Commit: 7be88831b21223f772a2ea3726a0a65da10a8208
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 10:33:25 +0200
Commit message:
Commit: 7be88831b21223f772a2ea3726a0a65da10a8208
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 10:33:25 +0200
Commit message:
fix sample name selection
Package: CAGEr
Commit: fc98ee71449b86f1b489c7e97e7376be0408f873
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-19 17:09:18 +0900
Commit message:
Commit: fc98ee71449b86f1b489c7e97e7376be0408f873
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-19 17:09:18 +0900
Commit message:
Merge branch 'devel' of github.com:charles-plessy/CAGEr into devel
Package: CAGEr
Commit: 028e795742c4098e96576d16f1467c4cbb6ad76b
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-19 17:07:45 +0900
Commit message:
Commit: 028e795742c4098e96576d16f1467c4cbb6ad76b
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-19 17:07:45 +0900
Commit message:
Merge pull request #134 from ferenckata/import_bigwigs fixing score import
Package: CAGEr
Commit: 35522402154eb51a650787d043081c4975c5dca7
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 09:31:22 +0200
Commit message:
Commit: 35522402154eb51a650787d043081c4975c5dca7
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 09:31:22 +0200
Commit message:
ran devtools document
Package: CAGEr
Commit: 9bc0cd62f2e2d77872a7706cd851889ff061a264
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 09:28:32 +0200
Commit message:
Commit: 9bc0cd62f2e2d77872a7706cd851889ff061a264
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 09:28:32 +0200
Commit message:
Merge branch 'automatic_alpha_passing' of github.com:ferenckata/CAGEr into automatic_alpha_passing
Package: CAGEr
Commit: 76e25273ac9b455a17a9f8af168ac352372dfb4e
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 09:28:23 +0200
Commit message:
Commit: 76e25273ac9b455a17a9f8af168ac352372dfb4e
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 09:28:23 +0200
Commit message:
remove unneessary newline, tested and it does what it should
Package: CAGEr
Commit: 0843fd9638101e93b9b4b68e4e223f88395c7c3d
Author: Katalin Ferenc <35810660+ferenckata@users.noreply.github.com>
Date: 2025-09-19 09:21:14 +0200
Commit message:
Commit: 0843fd9638101e93b9b4b68e4e223f88395c7c3d
Author: Katalin Ferenc <35810660+ferenckata@users.noreply.github.com>
Date: 2025-09-19 09:21:14 +0200
Commit message:
Merge branch 'charles-plessy:devel' into automatic_alpha_passing
Package: CAGEr
Commit: d8ad14fde0ef3c743c936b1d9e5603057298cffa
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 09:03:47 +0200
Commit message:
Commit: d8ad14fde0ef3c743c936b1d9e5603057298cffa
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-19 09:03:47 +0200
Commit message:
fixing score import
Package: CAGEr
Commit: eb22d9d8f22075d7cc87bada7cd4f8dd743b89b6
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-19 14:52:44 +0900
Commit message:
Commit: eb22d9d8f22075d7cc87bada7cd4f8dd743b89b6
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-19 14:52:44 +0900
Commit message:
devtools::document()
Package: CAGEr
Commit: af0807d2f911c28048bf11b949de5b29791108cf
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 13:34:21 +0200
Commit message:
Commit: af0807d2f911c28048bf11b949de5b29791108cf
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 13:34:21 +0200
Commit message:
this might work
Package: CAGEr
Commit: a32458d1a4661bace0c50ee1d73eb4bfd9ec351a
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 13:23:08 +0200
Commit message:
Commit: a32458d1a4661bace0c50ee1d73eb4bfd9ec351a
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 13:23:08 +0200
Commit message:
adding new param in ggplot object
Package: CAGEr
Commit: 0a7d5047bfc985b3212327f31e67e3f50ace7e0f
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-18 19:44:40 +0900
Commit message:
Commit: 0a7d5047bfc985b3212327f31e67e3f50ace7e0f
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-09-18 19:44:40 +0900
Commit message:
Merge pull request #131 from ferenckata/import_bigwigs bigwig import integration
Package: CAGEr
Commit: 9e72b57a872123f46c90ea69b52bdd49d49b7bd7
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 10:45:45 +0200
Commit message:
Commit: 9e72b57a872123f46c90ea69b52bdd49d49b7bd7
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 10:45:45 +0200
Commit message:
trying to fix doc error
Package: CAGEr
Commit: 1a72098e87d4ee6a4db38219b680eb4c3d53a210
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 10:36:10 +0200
Commit message:
Commit: 1a72098e87d4ee6a4db38219b680eb4c3d53a210
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 10:36:10 +0200
Commit message:
df was passed not object, so the ref slope was not correcty assigned. maybe better now. to be tested
Package: CAGEr
Commit: 1c2d42d8248a761505afe077ca4ed2e41e8b93ef
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 09:41:13 +0200
Commit message:
Commit: 1c2d42d8248a761505afe077ca4ed2e41e8b93ef
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 09:41:13 +0200
Commit message:
typo
Package: CAGEr
Commit: 33511b4f6a583963e0f3deed2874e360a6b20b57
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 09:37:37 +0200
Commit message:
Commit: 33511b4f6a583963e0f3deed2874e360a6b20b57
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 09:37:37 +0200
Commit message:
fix docstring
Package: CAGEr
Commit: ce9c6e08eab3b9a9d456f0f711dc7f88649f15d0
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 09:22:18 +0200
Commit message:
Commit: ce9c6e08eab3b9a9d456f0f711dc7f88649f15d0
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 09:22:18 +0200
Commit message:
fixing roxygen about input, removing comment - sorting done at getctss
Package: CAGEr
Commit: 6ce1e2ede0ab419fc779dc4d55319fc6cdfb1527
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 09:18:17 +0200
Commit message:
Commit: 6ce1e2ede0ab419fc779dc4d55319fc6cdfb1527
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-18 09:18:17 +0200
Commit message:
modifying according to comments, nto sure about sorting
Package: CAGEr
Commit: 73a1b07f7160ef0365419e1953eb665f766edae6
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 17:01:57 +0200
Commit message:
Commit: 73a1b07f7160ef0365419e1953eb665f766edae6
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 17:01:57 +0200
Commit message:
fix namespace
Package: CAGEr
Commit: 4781f86ddbab8ee08d94a19b7830f9324868e67b
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:55:05 +0200
Commit message:
Commit: 4781f86ddbab8ee08d94a19b7830f9324868e67b
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:55:05 +0200
Commit message:
fix order, fix family of method
Package: CAGEr
Commit: d15454e96a76392f02d2d3c8de651aeff922b89d
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:47:31 +0200
Commit message:
Commit: d15454e96a76392f02d2d3c8de651aeff922b89d
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:47:31 +0200
Commit message:
fix input params again
Package: CAGEr
Commit: 6ccc8d15136ead742b21897e86588d61021cab65
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:32:30 +0200
Commit message:
Commit: 6ccc8d15136ead742b21897e86588d61021cab65
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:32:30 +0200
Commit message:
fix r syntax
Package: CAGEr
Commit: f4dacbf784927540e9184208d8544b82bbd0c63b
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:31:40 +0200
Commit message:
Commit: f4dacbf784927540e9184208d8544b82bbd0c63b
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:31:40 +0200
Commit message:
fix order
Package: CAGEr
Commit: 7c2739ba2ea279b6676e79278c6d4b5dc58ea33a
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:29:20 +0200
Commit message:
Commit: 7c2739ba2ea279b6676e79278c6d4b5dc58ea33a
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:29:20 +0200
Commit message:
remove not applicable argument
Package: CAGEr
Commit: 9e7d4605a61b8eea9d3f89ae5b3eab1d2f4173ca
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:26:18 +0200
Commit message:
Commit: 9e7d4605a61b8eea9d3f89ae5b3eab1d2f4173ca
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:26:18 +0200
Commit message:
testing addition of new metadata
Package: CAGEr
Commit: dcb59c71e5f634089a5518889f46510612acd34f
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:16:28 +0200
Commit message:
Commit: dcb59c71e5f634089a5518889f46510612acd34f
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:16:28 +0200
Commit message:
fix incorrect function anem due to copypaste
Package: CAGEr
Commit: 60a40cb91bbef44ede315804a63d5c79f6937ebd
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:12:50 +0200
Commit message:
Commit: 60a40cb91bbef44ede315804a63d5c79f6937ebd
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:12:50 +0200
Commit message:
fix docs
Package: CAGEr
Commit: e06e39d32512f5d3e5e5c5ffefd6c899d3fb705b
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:06:47 +0200
Commit message:
Commit: e06e39d32512f5d3e5e5c5ffefd6c899d3fb705b
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 16:06:47 +0200
Commit message:
renamed function, fit to S4
Package: CAGEr
Commit: 9ceeec47aafd66818be1b9a6b496d9b9ea15b962
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 15:42:21 +0200
Commit message:
Commit: 9ceeec47aafd66818be1b9a6b496d9b9ea15b962
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-17 15:42:21 +0200
Commit message:
address comments: get str1 file expect str2, move examples
Package: CAGEr
Commit: 4e6bcb63bb5fd1bcb96d587feb77b1e88894682b
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-05 16:37:29 +0200
Commit message:
Commit: 4e6bcb63bb5fd1bcb96d587feb77b1e88894682b
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-05 16:37:29 +0200
Commit message:
updated with new changes
Package: CAGEr
Commit: 1d71310678914383cc24d32ed35991b28dae5349
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-05 16:26:40 +0200
Commit message:
Commit: 1d71310678914383cc24d32ed35991b28dae5349
Author: ferenckata <katagyik@gmail.com>
Date: 2025-09-05 16:26:40 +0200
Commit message:
remove unnecessary (duplicated code), issue remaining that bigwigs are two files instead of one for each sample
Package: CAGEr
Commit: 3ec586772bd9b82824aec0ae426f22609364eefe
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-08-29 16:25:52 +0900
Commit message:
Commit: 3ec586772bd9b82824aec0ae426f22609364eefe
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-08-29 16:25:52 +0900
Commit message:
Merge branch 'devel' into correlation_heatmap
Package: CAGEr
Commit: 53eff19c67037acb8ab9c0002071c3151e719628
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-08-26 08:25:12 +0900
Commit message:
Commit: 53eff19c67037acb8ab9c0002071c3151e719628
Author: Charles Plessy <charles.plessy@oist.jp>
Date: 2025-08-26 08:25:12 +0900
Commit message:
biocthis::use_bioc_github_action(biocdocker = 'devel', covr = F, pkgdown = F, testthat = F, RUnit = F)
Package: CAGEr
Commit: 7ef2c8ca8705edb2350c32c0ed32dacf0cdfba4c
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-22 10:32:40 +0200
Commit message:
Commit: 7ef2c8ca8705edb2350c32c0ed32dacf0cdfba4c
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-22 10:32:40 +0200
Commit message:
addressing PR comments
Package: CAGEr
Commit: 414a32050010bf26b3f7008a8b9f2f87b30efe74
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-19 15:46:19 +0200
Commit message:
Commit: 414a32050010bf26b3f7008a8b9f2f87b30efe74
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-19 15:46:19 +0200
Commit message:
attempt to pass CI
Package: CAGEr
Commit: b78ed44c6da6428825be948d8ebad39cf2b49254
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-19 15:25:17 +0200
Commit message:
Commit: b78ed44c6da6428825be948d8ebad39cf2b49254
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-19 15:25:17 +0200
Commit message:
fix newline
Package: CAGEr
Commit: cbf8d4524cb33973308a3016347db0dccf170787
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-19 15:25:01 +0200
Commit message:
Commit: cbf8d4524cb33973308a3016347db0dccf170787
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-19 15:25:01 +0200
Commit message:
reintroduce whitespaces
Package: CAGEr
Commit: 35f3fa6f907d3ec6a26115774e31d4352a68ddec
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-19 15:24:29 +0200
Commit message:
Commit: 35f3fa6f907d3ec6a26115774e31d4352a68ddec
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-19 15:24:29 +0200
Commit message:
remove whitespace
Package: CAGEr
Commit: 14731dc5ff9596427c97fcfb877696c1e8823168
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-19 15:23:55 +0200
Commit message:
Commit: 14731dc5ff9596427c97fcfb877696c1e8823168
Author: ferenckata <katagyik@gmail.com>
Date: 2025-08-19 15:23:55 +0200
Commit message:
remove whitespace
Package: CAGEr
Commit: 7d211ed6cd6898ffbff2ebcb29e4c4b711995748
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 23:12:32 +0200
Commit message:
Commit: 7d211ed6cd6898ffbff2ebcb29e4c4b711995748
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 23:12:32 +0200
Commit message:
remove obsolete string fixes
Package: CAGEr
Commit: 81761129aa00dfc3af068d9e497003ac2fe5c303
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 23:05:38 +0200
Commit message:
Commit: 81761129aa00dfc3af068d9e497003ac2fe5c303
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 23:05:38 +0200
Commit message:
attempt at bigwig import integration
Package: CAGEr
Commit: 1d3dc2dcc1abcf2d37c22b6f84509dff259ad3b0
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 22:47:18 +0200
Commit message:
Commit: 1d3dc2dcc1abcf2d37c22b6f84509dff259ad3b0
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 22:47:18 +0200
Commit message:
tentative place where this could be solved
Package: CAGEr
Commit: feb6928b54e7a0a85bdd555b050e0487caaecaf0
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 22:27:46 +0200
Commit message:
Commit: feb6928b54e7a0a85bdd555b050e0487caaecaf0
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 22:27:46 +0200
Commit message:
a simple function to calculate correlation matrix and let the user plot it
Package: CAGEr
Commit: 3e10108f37b894421be2825a570b04b977b16866
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 22:07:42 +0200
Commit message:
Commit: 3e10108f37b894421be2825a570b04b977b16866
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 22:07:42 +0200
Commit message:
fix export and some indentations
Package: CAGEr
Commit: dce5815ab2a2e627ef0a681c12a2dee6bc4f1b25
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 22:04:49 +0200
Commit message:
Commit: dce5815ab2a2e627ef0a681c12a2dee6bc4f1b25
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-15 22:04:49 +0200
Commit message:
add full enhancer calling function, try to fit into s4
Package: CAGEr
Commit: 97a20c38990cb22d93b054bc6d171e9acc5179d3
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-14 10:03:13 +0200
Commit message:
Commit: 97a20c38990cb22d93b054bc6d171e9acc5179d3
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-14 10:03:13 +0200
Commit message:
fix typo
Package: CAGEr
Commit: b9d6608e7e50818555e135921dc309b8457da12d
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-14 09:40:45 +0200
Commit message:
Commit: b9d6608e7e50818555e135921dc309b8457da12d
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-14 09:40:45 +0200
Commit message:
fix typo
Package: CAGEr
Commit: 00619072284a75cd57bb770cd11849e3a9bacdf8
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-14 09:21:53 +0200
Commit message:
Commit: 00619072284a75cd57bb770cd11849e3a9bacdf8
Author: Katalin Terezia Ferenc <katalitf@uio.no>
Date: 2025-08-14 09:21:53 +0200
Commit message:
all the modifications in cageflow are integrated here, choices to be discussed
Package: ggtree
Commit: 1ca4f0e593355851fb0604ab567912e62c71245a
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-16 09:30:49 +0800
Commit message:
Commit: 1ca4f0e593355851fb0604ab567912e62c71245a
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-16 09:30:49 +0800
Commit message:
bump version
Package: ggtree
Commit: 57f05f72a275fcb29134f2a016247bd5f9f0c86c
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-16 09:05:56 +0800
Commit message:
Commit: 57f05f72a275fcb29134f2a016247bd5f9f0c86c
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-16 09:05:56 +0800
Commit message:
Merge pull request #672 from xiangpin/geom_range_update Geom range update
Package: ggtree
Commit: ee7739715d696b294f4176a4155428c5c323ebe3
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-16 09:04:57 +0800
Commit message:
Commit: ee7739715d696b294f4176a4155428c5c323ebe3
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-16 09:04:57 +0800
Commit message:
Merge pull request #668 from xiangpin/gheatmap_update update gheatmap to be compatible with ggplot2-4.0.0
Package: ggtree
Commit: 89bbce5544ef0249345f2f6ff02afa4bea34ead9
Author: xiangpin <xshuangbin@163.com>
Date: 2025-10-09 10:52:07 +0800
Commit message:
Commit: 89bbce5544ef0249345f2f6ff02afa4bea34ead9
Author: xiangpin <xshuangbin@163.com>
Date: 2025-10-09 10:52:07 +0800
Commit message:
update the example of geom_hilight and geom_range
Package: ggtree
Commit: b6dffa963520a700f824b9137f53079c86c89f4f
Author: xiangpin <xshuangbin@163.com>
Date: 2025-09-29 19:36:11 +0800
Commit message:
Commit: b6dffa963520a700f824b9137f53079c86c89f4f
Author: xiangpin <xshuangbin@163.com>
Date: 2025-09-29 19:36:11 +0800
Commit message:
update gheatmap to be compatible with ggplot2-4.0.0
Package: ggtree
Commit: 3798e55abff7aaa5dda3787c8668359f48e72330
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-09-18 11:30:07 +0800
Commit message:
Commit: 3798e55abff7aaa5dda3787c8668359f48e72330
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-09-18 11:30:07 +0800
Commit message:
update readme
Package: ggtree
Commit: fd393c8eb7383f73e6a0742545fac1350c21cf63
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-09-18 11:27:39 +0800
Commit message:
Commit: fd393c8eb7383f73e6a0742545fac1350c21cf63
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-09-18 11:27:39 +0800
Commit message:
update readme
Package: CBN2Path
Commit: f8657897eded26c2f4767f6f515bc59d99825600
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 20:10:54 -0500
Commit message:
Commit: f8657897eded26c2f4767f6f515bc59d99825600
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 20:10:54 -0500
Commit message:
bump
Package: CBN2Path
Commit: d075d28ff857b9f4a76488f999c5f4d3dc99a48e
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 20:10:12 -0500
Commit message:
Commit: d075d28ff857b9f4a76488f999c5f4d3dc99a48e
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 20:10:12 -0500
Commit message:
shortened example runtime
Package: CBN2Path
Commit: a4917effd6b4e6917de5373129ffb1d4741434a5
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 19:51:59 -0500
Commit message:
Commit: a4917effd6b4e6917de5373129ffb1d4741434a5
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 19:51:59 -0500
Commit message:
reorg inst/scripts and rebuild
Package: CBN2Path
Commit: 5d3d52b68b130ea3e070a03ae8262fe791f7c180
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 19:36:49 -0500
Commit message:
Commit: 5d3d52b68b130ea3e070a03ae8262fe791f7c180
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 19:36:49 -0500
Commit message:
fix test
Package: CBN2Path
Commit: 4bf0070a385ec56efb20b5856978fe1b2a60a6e2
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 19:32:37 -0500
Commit message:
Commit: 4bf0070a385ec56efb20b5856978fe1b2a60a6e2
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 19:32:37 -0500
Commit message:
bump
Package: CBN2Path
Commit: f28609dbfaba784553bb478d2d89507988b0eee8
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 19:32:04 -0500
Commit message:
Commit: f28609dbfaba784553bb478d2d89507988b0eee8
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 19:32:04 -0500
Commit message:
fix some final errors
Package: CBN2Path
Commit: 4e373cfabea12abc52b6ee7e9e393148157cda55
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 19:19:02 -0500
Commit message:
Commit: 4e373cfabea12abc52b6ee7e9e393148157cda55
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 19:19:02 -0500
Commit message:
fix tests
Package: CBN2Path
Commit: 55c90cce791a564d689b049f4edc10054225ec40
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 18:54:24 -0500
Commit message:
Commit: 55c90cce791a564d689b049f4edc10054225ec40
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 18:54:24 -0500
Commit message:
fix fprintf issue
Package: CBN2Path
Commit: 13a605717750b6215894decef97ac0748fa6a848
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 18:53:18 -0500
Commit message:
Commit: 13a605717750b6215894decef97ac0748fa6a848
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 18:53:18 -0500
Commit message:
change fprintf
Package: CBN2Path
Commit: d78b6428918f8c0eeb5bf00111da3a04a7a143e1
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 18:43:18 -0500
Commit message:
Commit: d78b6428918f8c0eeb5bf00111da3a04a7a143e1
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 18:43:18 -0500
Commit message:
version bump
Package: CBN2Path
Commit: 17d15c85cb728443c5071cac429bb192c69d6a5e
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-15 17:52:29 -0400
Commit message:
Commit: 17d15c85cb728443c5071cac429bb192c69d6a5e
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-15 17:52:29 -0400
Commit message:
CBN2Path is ready
Package: CBN2Path
Commit: 6ad444ca1697e9fd137499cfd3250c7e4f69b371
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-15 14:40:17 -0400
Commit message:
Commit: 6ad444ca1697e9fd137499cfd3250c7e4f69b371
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-15 14:40:17 -0400
Commit message:
data_provenance.R is finalized
Package: CBN2Path
Commit: 93f963e8debaffa3cae068f7121368f69f341e4e
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-15 14:21:37 -0400
Commit message:
Commit: 93f963e8debaffa3cae068f7121368f69f341e4e
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-15 14:21:37 -0400
Commit message:
Vignette Finalized
Package: CBN2Path
Commit: 2bff76b8136f06f8f58dc8ad039b313ae4e0cc8e
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-15 14:20:04 -0400
Commit message:
Commit: 2bff76b8136f06f8f58dc8ad039b313ae4e0cc8e
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-15 14:20:04 -0400
Commit message:
Vignette Finalized
Package: CBN2Path
Commit: 290598bf24657368dcef9ff725bf24ab894048aa
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 04:00:33 -0500
Commit message:
Commit: 290598bf24657368dcef9ff725bf24ab894048aa
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-15 04:00:33 -0500
Commit message:
fixed issue with nodes (now generalized and accomodates for incomplete posets)
Package: CBN2Path
Commit: 2977dfab24d42cbd9204263d754c8c4da759e9b7
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-15 00:01:12 -0400
Commit message:
Commit: 2977dfab24d42cbd9204263d754c8c4da759e9b7
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-15 00:01:12 -0400
Commit message:
Data Provenance Finalized
Package: CBN2Path
Commit: d32cc0fc68b0f991fbd2466ba2d2d08fc9cadcce
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-14 23:12:50 -0400
Commit message:
Commit: d32cc0fc68b0f991fbd2466ba2d2d08fc9cadcce
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-14 23:12:50 -0400
Commit message:
Vignette edited
Package: CBN2Path
Commit: 23acaf5b86b3959cb62042e095a514ab66513f10
Author: rockwillck <william@williamck.com>
Date: 2025-10-13 15:12:26 -0400
Commit message:
Commit: 23acaf5b86b3959cb62042e095a514ab66513f10
Author: rockwillck <william@williamck.com>
Date: 2025-10-13 15:12:26 -0400
Commit message:
Delete #config.log#
Package: CBN2Path
Commit: 6b431acdbb97509546d5094e19c5c4d9d1a8dffa
Author: rockwillck <william@williamck.com>
Date: 2025-10-13 15:12:03 -0400
Commit message:
Commit: 6b431acdbb97509546d5094e19c5c4d9d1a8dffa
Author: rockwillck <william@williamck.com>
Date: 2025-10-13 15:12:03 -0400
Commit message:
Delete .#alaki
Package: CBN2Path
Commit: 0fb28d339f95654aef9cbb33141afa0930568ec7
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-12 23:39:05 -0500
Commit message:
Commit: 0fb28d339f95654aef9cbb33141afa0930568ec7
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-12 23:39:05 -0500
Commit message:
accomodate multiple summaries
Package: CBN2Path
Commit: 86b33b8387669ef2ac65d68c5826a009603b9b8b
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-12 22:07:45 -0500
Commit message:
Commit: 86b33b8387669ef2ac65d68c5826a009603b9b8b
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-12 22:07:45 -0500
Commit message:
docs for neg epsilon
Package: CBN2Path
Commit: 074e140235b2af4d1d2e3e296becc903838a7373
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-12 22:07:19 -0500
Commit message:
Commit: 074e140235b2af4d1d2e3e296becc903838a7373
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-12 22:07:19 -0500
Commit message:
change to include neg epsilon
Package: CBN2Path
Commit: 410cdfeaa02676a49bee02ca0177e07d0c29c16a
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-12 22:10:26 -0400
Commit message:
Commit: 410cdfeaa02676a49bee02ca0177e07d0c29c16a
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-12 22:10:26 -0400
Commit message:
Vignette edited
Package: CBN2Path
Commit: 30924b835603d349e8bdee93e7e9d810ac76ed5c
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-12 17:39:44 -0400
Commit message:
Commit: 30924b835603d349e8bdee93e7e9d810ac76ed5c
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-12 17:39:44 -0400
Commit message:
Further edits
Package: CBN2Path
Commit: 5c0d849009b32d49e7ebd4587aba1a85554b2a8c
Author: rockwillck <william@williamck.com>
Date: 2025-10-12 16:00:20 -0400
Commit message:
Commit: 5c0d849009b32d49e7ebd4587aba1a85554b2a8c
Author: rockwillck <william@williamck.com>
Date: 2025-10-12 16:00:20 -0400
Commit message:
Remove unnecessary cbind operation in tcga
Package: CBN2Path
Commit: 6ae0cdf5abb2c1c7e3778df052edd3496ac70ede
Author: rockwillck <william@williamck.com>
Date: 2025-10-12 16:00:07 -0400
Commit message:
Commit: 6ae0cdf5abb2c1c7e3778df052edd3496ac70ede
Author: rockwillck <william@williamck.com>
Date: 2025-10-12 16:00:07 -0400
Commit message:
Add 1 column to .pat auto in Spock
Package: CBN2Path
Commit: 59f8026ad558390e2d19e4a98112b4b2df0f3fa5
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-12 11:44:08 -0400
Commit message:
Commit: 59f8026ad558390e2d19e4a98112b4b2df0f3fa5
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-12 11:44:08 -0400
Commit message:
BiocParallel Edited
Package: CBN2Path
Commit: 81c5106a98a0be0cee744ce9592c2b8c270eca07
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-11 21:23:05 -0400
Commit message:
Commit: 81c5106a98a0be0cee744ce9592c2b8c270eca07
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-11 21:23:05 -0400
Commit message:
Finalized generateTCGAMatrix function
Package: CBN2Path
Commit: 77e938a4273b15657fa9501b96fd385f6b9147f3
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-11 19:34:26 -0400
Commit message:
Commit: 77e938a4273b15657fa9501b96fd385f6b9147f3
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-11 19:34:26 -0400
Commit message:
Fixed generateTCGAMatrix function
Package: CBN2Path
Commit: bb946e1b6d9acf1043a4a0b3a912653de3f90e4b
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-11 16:23:17 -0400
Commit message:
Commit: bb946e1b6d9acf1043a4a0b3a912653de3f90e4b
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-11 16:23:17 -0400
Commit message:
Merge github.com:rockwillck/CBN2Path into HEAD
Package: CBN2Path
Commit: 9d861ff2e7056311fda9a9d174f7da1cfe859ecb
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-11 16:23:08 -0400
Commit message:
Commit: 9d861ff2e7056311fda9a9d174f7da1cfe859ecb
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-10-11 16:23:08 -0400
Commit message:
minor edits
Package: CBN2Path
Commit: ec6952a087277265b26b510074d1a51b8ab713a1
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-03 21:45:29 -0500
Commit message:
Commit: ec6952a087277265b26b510074d1a51b8ab713a1
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-03 21:45:29 -0500
Commit message:
fixed bioconductor dependencies
Package: CBN2Path
Commit: 8a9ed0c87cb400ed66801586dcc596673f15d624
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-03 20:07:20 -0500
Commit message:
Commit: 8a9ed0c87cb400ed66801586dcc596673f15d624
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-03 20:07:20 -0500
Commit message:
small change in unrun code block in vignette
Package: CBN2Path
Commit: 1ffe17d0633b44003e85106a7307c1e88bc21650
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-03 20:06:04 -0500
Commit message:
Commit: 1ffe17d0633b44003e85106a7307c1e88bc21650
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-10-03 20:06:04 -0500
Commit message:
variable camelCase refactoring and parallelization using BiocParallel
Package: CBN2Path
Commit: 3995496e54ff8f4b03334bee008131ef195f0197
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-09-29 06:09:33 -0500
Commit message:
Commit: 3995496e54ff8f4b03334bee008131ef195f0197
Author: William Choi-Kim <will.choi.kim@gmail.com>
Date: 2025-09-29 06:09:33 -0500
Commit message:
add TCGA function
Package: CBN2Path
Commit: 99fa05d5d8d1cad0413f50b019dba89af56c6f4a
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-08-31 18:05:19 -0400
Commit message:
Commit: 99fa05d5d8d1cad0413f50b019dba89af56c6f4a
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-08-31 18:05:19 -0400
Commit message:
Citation to the F1000Research paper
Package: CBN2Path
Commit: bfef36c02e2444b47ef55b09cc35281868792420
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-08-31 18:00:40 -0400
Commit message:
Commit: bfef36c02e2444b47ef55b09cc35281868792420
Author: RzgarHosseini <razgar@mail.com>
Date: 2025-08-31 18:00:40 -0400
Commit message:
Citation to the F1000Research paper
Package: CBN2Path
Commit: 7c697be40df1984c9c617eba631b6bc97777b38e
Author: rockwillck <william@williamck.com>
Date: 2025-08-10 22:47:24 -0400
Commit message:
Commit: 7c697be40df1984c9c617eba631b6bc97777b38e
Author: rockwillck <william@williamck.com>
Date: 2025-08-10 22:47:24 -0400
Commit message:
Create CITATION.cff
Package: epiregulon
Commit: 352e4f498720700c31dbfec2bf443042a8a37543
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 21:05:00 +0000
Commit message:
Commit: 352e4f498720700c31dbfec2bf443042a8a37543
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 21:05:00 +0000
Commit message:
v1.99.0
Package: epiregulon
Commit: 46bc2314fed3d61396138fde1231ebbd33b96f4f
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 21:04:21 +0000
Commit message:
Commit: 46bc2314fed3d61396138fde1231ebbd33b96f4f
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 21:04:21 +0000
Commit message:
Revert "v2.0.0" This reverts commit c9cf98b3f81a39b1caefed7b260432b652a35b8d.
Package: epiregulon
Commit: c9cf98b3f81a39b1caefed7b260432b652a35b8d
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 20:51:01 +0000
Commit message:
Commit: c9cf98b3f81a39b1caefed7b260432b652a35b8d
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 20:51:01 +0000
Commit message:
v2.0.0
Package: epiregulon
Commit: 41d23cb539035c385248ae63c5c43d61e67d2593
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 20:35:51 +0000
Commit message:
Commit: 41d23cb539035c385248ae63c5c43d61e67d2593
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 20:35:51 +0000
Commit message:
change of the output column names
Package: epiregulon
Commit: eaef695cca2a0c01567e946f6c0054f230ad1180
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 20:32:24 +0000
Commit message:
Commit: eaef695cca2a0c01567e946f6c0054f230ad1180
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 20:32:24 +0000
Commit message:
corrections after check
Package: epiregulon
Commit: 2eec17614afc2e385dca6ddc0caa1e2d70d3c22d
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 18:52:14 +0000
Commit message:
Commit: 2eec17614afc2e385dca6ddc0caa1e2d70d3c22d
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 18:52:14 +0000
Commit message:
improve class assertion
Package: epiregulon
Commit: 3e8f03f25ff11627db30a8bc41dad02a21432068
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 18:51:32 +0000
Commit message:
Commit: 3e8f03f25ff11627db30a8bc41dad02a21432068
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 18:51:32 +0000
Commit message:
update
Package: epiregulon
Commit: 31a227417dc2c547b3e23efcbd84d394c188f793
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 18:49:56 +0000
Commit message:
Commit: 31a227417dc2c547b3e23efcbd84d394c188f793
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 18:49:56 +0000
Commit message:
code cleaning
Package: epiregulon
Commit: 4c1b93214c213f674ece7fe313666057750125fd
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 17:49:06 +0000
Commit message:
Commit: 4c1b93214c213f674ece7fe313666057750125fd
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 17:49:06 +0000
Commit message:
small improvements
Package: epiregulon
Commit: b5a93efdd828de3b29ecf8f200982a912121081f
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 08:08:53 -0700
Commit message:
Commit: b5a93efdd828de3b29ecf8f200982a912121081f
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 08:08:53 -0700
Commit message:
batch size for parallel computing
Package: epiregulon
Commit: 0f82c80afcf8064f8ecc3081ac62379911ecc51b
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 08:07:52 -0700
Commit message:
Commit: 0f82c80afcf8064f8ecc3081ac62379911ecc51b
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 08:07:52 -0700
Commit message:
wrap lines
Package: epiregulon
Commit: 01899d773bd8451e6b4266cf90b0d14759ff3cf4
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 11:47:21 +0000
Commit message:
Commit: 01899d773bd8451e6b4266cf90b0d14759ff3cf4
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 11:47:21 +0000
Commit message:
require at least 5 metacells
Package: epiregulon
Commit: fb506b50cccfba999e14a3ef3bf55867e61668c9
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 10:14:57 +0000
Commit message:
Commit: fb506b50cccfba999e14a3ef3bf55867e61668c9
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 10:14:57 +0000
Commit message:
handle factor clusters and warn about too few metacells in cluster
Package: epiregulon
Commit: b8460661ae26f63b24657bf5a732bb83ed80f1ca
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 06:41:23 +0000
Commit message:
Commit: b8460661ae26f63b24657bf5a732bb83ed80f1ca
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-15 06:41:23 +0000
Commit message:
small improvements and bug fixes
Package: epiregulon
Commit: 5631f6280fbcfb976b5464710b056ba2efaa2f33
Author: Tomasz Wlodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 17:36:31 +0200
Commit message:
Commit: 5631f6280fbcfb976b5464710b056ba2efaa2f33
Author: Tomasz Wlodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 17:36:31 +0200
Commit message:
adding clusters
Package: epiregulon
Commit: 76503ce4a72beffbf45a3befc5c4b62b0955f633
Author: Tomasz Wlodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 17:34:33 +0200
Commit message:
Commit: 76503ce4a72beffbf45a3befc5c4b62b0955f633
Author: Tomasz Wlodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 17:34:33 +0200
Commit message:
Merge branch 'revert-bd76fcb8' into 'devel_2.0' Revert "Adding clusters" See merge request scwg/gene-transcriptional-network/activity-inference/Epiregulon!22
Package: epiregulon
Commit: d048bf017193e618839ea221cd608505e65cc38f
Author: Tomasz Wlodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 17:33:20 +0200
Commit message:
Commit: d048bf017193e618839ea221cd608505e65cc38f
Author: Tomasz Wlodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 17:33:20 +0200
Commit message:
Revert "Adding clusters" This reverts commit bd76fcb82b3abe0c0a6a633db18d85631ac83834
Package: epiregulon
Commit: bd76fcb82b3abe0c0a6a633db18d85631ac83834
Author: Tomasz Wlodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 17:06:50 +0200
Commit message:
Commit: bd76fcb82b3abe0c0a6a633db18d85631ac83834
Author: Tomasz Wlodarczyk <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 17:06:50 +0200
Commit message:
Adding clusters
Package: epiregulon
Commit: 861c10c0913e8bb46fdd12248a96e6a8d8b252fd
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 10:11:58 +0000
Commit message:
Commit: 861c10c0913e8bb46fdd12248a96e6a8d8b252fd
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 10:11:58 +0000
Commit message:
cor_cutoff deprecation
Package: epiregulon
Commit: 28edf5c967305cafcd7f941a7b9685e5f4dc8316
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 10:09:13 +0000
Commit message:
Commit: 28edf5c967305cafcd7f941a7b9685e5f4dc8316
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-13 10:09:13 +0000
Commit message:
do not filter connections during metacell number optimization
Package: epiregulon
Commit: aa02857ade1e1d212130a1c3edd73f7646767bf3
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-11 01:52:53 -0700
Commit message:
Commit: aa02857ade1e1d212130a1c3edd73f7646767bf3
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-11 01:52:53 -0700
Commit message:
show method added
Package: epiregulon
Commit: 647f9ebf824a3e7d6b670d713e5d287a1101d76b
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 13:34:19 -0700
Commit message:
Commit: 647f9ebf824a3e7d6b670d713e5d287a1101d76b
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 13:34:19 -0700
Commit message:
correct tests
Package: epiregulon
Commit: 7dac0109bca0a6b875f1bb0439052b3150c682e5
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 13:17:52 -0700
Commit message:
Commit: 7dac0109bca0a6b875f1bb0439052b3150c682e5
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 13:17:52 -0700
Commit message:
correct import
Package: epiregulon
Commit: 303214383ae40964b9af5f6331f9968eb632abe6
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 10:10:09 -0700
Commit message:
Commit: 303214383ae40964b9af5f6331f9968eb632abe6
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 10:10:09 -0700
Commit message:
set default cellNum
Package: epiregulon
Commit: b47b256f549a6779c19b68f5a6f9354b4df8e550
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 07:40:06 -0700
Commit message:
Commit: b47b256f549a6779c19b68f5a6f9354b4df8e550
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 07:40:06 -0700
Commit message:
news update
Package: epiregulon
Commit: 78be2684951f9b04b3e9849e1a785c9652f8add4
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 07:37:33 -0700
Commit message:
Commit: 78be2684951f9b04b3e9849e1a785c9652f8add4
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 07:37:33 -0700
Commit message:
documentation update
Package: epiregulon
Commit: f15798fbf01f5ddd44eac8ef9cc41f8689476c4d
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 07:36:19 -0700
Commit message:
Commit: f15798fbf01f5ddd44eac8ef9cc41f8689476c4d
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 07:36:19 -0700
Commit message:
deprecation warnings
Package: epiregulon
Commit: a60e4fa2c4f1ee48d8fe690d77ece4e212617dce
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 07:32:37 -0700
Commit message:
Commit: a60e4fa2c4f1ee48d8fe690d77ece4e212617dce
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 07:32:37 -0700
Commit message:
deterministic clustering
Package: epiregulon
Commit: 002a8092b79d35269aab15a3ec192b5129fa4cc9
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 07:31:28 -0700
Commit message:
Commit: 002a8092b79d35269aab15a3ec192b5129fa4cc9
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 07:31:28 -0700
Commit message:
bug fixes
Package: epiregulon
Commit: e6a8d29aa601d355c23ed75bd36b55989f0592c8
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 03:53:45 -0700
Commit message:
Commit: e6a8d29aa601d355c23ed75bd36b55989f0592c8
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 03:53:45 -0700
Commit message:
conversion to spare matrix
Package: epiregulon
Commit: f883f0c878bf4d09810d117a28129cfb19f32cf0
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 03:48:46 -0700
Commit message:
Commit: f883f0c878bf4d09810d117a28129cfb19f32cf0
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 03:48:46 -0700
Commit message:
citation update
Package: epiregulon
Commit: 271b89f687da6ee0197580ea337010d8e09cd6af
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 03:45:36 -0700
Commit message:
Commit: 271b89f687da6ee0197580ea337010d8e09cd6af
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 03:45:36 -0700
Commit message:
Merge branch 'CellNumSol' into devel_2.0
Package: epiregulon
Commit: 5b46515ad3c3c947b7fc698494eb6da8b9d27f69
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 03:44:48 -0700
Commit message:
Commit: 5b46515ad3c3c947b7fc698494eb6da8b9d27f69
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 03:44:48 -0700
Commit message:
more comments
Package: epiregulon
Commit: af20743ddde3ec25563f557425841f626d3cdcdd
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:56:05 -0700
Commit message:
Commit: af20743ddde3ec25563f557425841f626d3cdcdd
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:56:05 -0700
Commit message:
message when optimization issue is detected
Package: epiregulon
Commit: 6c3659596de841dbc168dfbce3edd2d503ede5aa
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:48:20 -0700
Commit message:
Commit: 6c3659596de841dbc168dfbce3edd2d503ede5aa
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:48:20 -0700
Commit message:
check lowest mean p-value if quadratic regression fails
Package: epiregulon
Commit: 404dc826683198ffbd9971f18cf0127a0289c7ce
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:41:59 -0700
Commit message:
Commit: 404dc826683198ffbd9971f18cf0127a0289c7ce
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:41:59 -0700
Commit message:
documentation update
Package: epiregulon
Commit: 309ba12812eb738333a79e2b3eeab45e54883cd8
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:38:57 -0700
Commit message:
Commit: 309ba12812eb738333a79e2b3eeab45e54883cd8
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:38:57 -0700
Commit message:
filter links based on the p-value
Package: epiregulon
Commit: 7e7cf33774b565582a82727f9be7672d578c1971
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:24:34 -0700
Commit message:
Commit: 7e7cf33774b565582a82727f9be7672d578c1971
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:24:34 -0700
Commit message:
Revert "resample cells to increase metacell size" This reverts commit 5b0910a574f2c3488407b889e479724b6a0e7bc9.
Package: epiregulon
Commit: 16724559843dcb57a694d6ec7ec7d7135ebb4e6a
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:10:16 -0700
Commit message:
Commit: 16724559843dcb57a694d6ec7ec7d7135ebb4e6a
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-10 02:10:16 -0700
Commit message:
Revert "control for the number of cell resamplings" This reverts commit 85ca998ec11310624e7e5961ff3ce6535a68d4c2.
Package: epiregulon
Commit: a99a7323d55be1e3e49e5de1b2f97a945eed8cf4
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-06 23:50:24 -0700
Commit message:
Commit: a99a7323d55be1e3e49e5de1b2f97a945eed8cf4
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-06 23:50:24 -0700
Commit message:
modification of optimization defaults
Package: epiregulon
Commit: 2926a07ae299c8125611143f7df090e8dc2f8a4c
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-06 23:09:15 -0700
Commit message:
Commit: 2926a07ae299c8125611143f7df090e8dc2f8a4c
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-06 23:09:15 -0700
Commit message:
CellNumSol class definition
Package: epiregulon
Commit: 28b7ba53284a08b2718fb6df346ea7c4211f5c56
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-06 23:07:47 -0700
Commit message:
Commit: 28b7ba53284a08b2718fb6df346ea7c4211f5c56
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-06 23:07:47 -0700
Commit message:
guessing the solution form the cell number
Package: epiregulon
Commit: c5a289329cd65b018cf8cc1916589175e6ba3215
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-06 22:30:10 -0700
Commit message:
Commit: c5a289329cd65b018cf8cc1916589175e6ba3215
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-06 22:30:10 -0700
Commit message:
bug fix, default correlation threshold, and show method
Package: epiregulon
Commit: b6c74512e96d2ca52ed298624f4a96ddf2d7fd89
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-05 11:17:52 -0700
Commit message:
Commit: b6c74512e96d2ca52ed298624f4a96ddf2d7fd89
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-05 11:17:52 -0700
Commit message:
add documentation
Package: epiregulon
Commit: 85ca998ec11310624e7e5961ff3ce6535a68d4c2
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-05 11:17:09 -0700
Commit message:
Commit: 85ca998ec11310624e7e5961ff3ce6535a68d4c2
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-05 11:17:09 -0700
Commit message:
control for the number of cell resamplings
Package: epiregulon
Commit: 5b0910a574f2c3488407b889e479724b6a0e7bc9
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-01 07:10:24 -0700
Commit message:
Commit: 5b0910a574f2c3488407b889e479724b6a0e7bc9
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-01 07:10:24 -0700
Commit message:
resample cells to increase metacell size
Package: epiregulon
Commit: 4e0ea46b714ebff5bce9e93776004fbb35a1ee8d
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-01 01:12:30 -0700
Commit message:
Commit: 4e0ea46b714ebff5bce9e93776004fbb35a1ee8d
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-10-01 01:12:30 -0700
Commit message:
cell number optimization as a separate funtion and tests
Package: epiregulon
Commit: 56056376696b9ea21170e13a2978da9484864550
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-09-05 03:17:39 -0700
Commit message:
Commit: 56056376696b9ea21170e13a2978da9484864550
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-09-05 03:17:39 -0700
Commit message:
Merge branch 'deterministic_kmeans' into devel_2.0
Package: epiregulon
Commit: cf1b7c08b3ad682e105d04113f8c2a1491a5efe1
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-09-05 02:42:04 -0700
Commit message:
Commit: cf1b7c08b3ad682e105d04113f8c2a1491a5efe1
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-09-05 02:42:04 -0700
Commit message:
epirical p-values and FDR
Package: epiregulon
Commit: 1a46a307426d5df028c3b5f29b0312bea911914d
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-09-05 02:29:25 -0700
Commit message:
Commit: 1a46a307426d5df028c3b5f29b0312bea911914d
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-09-05 02:29:25 -0700
Commit message:
Calculation of the epirical p-value and FDR.
Package: epiregulon
Commit: db541956a59e08daaf6f5a015fea31580e5c0b80
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-09-05 02:22:56 -0700
Commit message:
Commit: db541956a59e08daaf6f5a015fea31580e5c0b80
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-09-05 02:22:56 -0700
Commit message:
use aggregateAcrossCells from scrapper
Package: epiregulon
Commit: 047cc679420496bffc827b3e18019894a32fb227
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-29 06:04:35 -0700
Commit message:
Commit: 047cc679420496bffc827b3e18019894a32fb227
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-29 06:04:35 -0700
Commit message:
Spearman method as default
Package: epiregulon
Commit: b88866c8328e27f7780184c0ec7f92e34fa750ec
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-29 02:06:02 -0700
Commit message:
Commit: b88866c8328e27f7780184c0ec7f92e34fa750ec
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-29 02:06:02 -0700
Commit message:
switch to scrapper::clusterKmeans
Package: epiregulon
Commit: aaabc031282214a7e9fc6a9f35624314d68ceec6
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-26 13:18:37 -0700
Commit message:
Commit: aaabc031282214a7e9fc6a9f35624314d68ceec6
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-26 13:18:37 -0700
Commit message:
sparse activity output
Package: epiregulon
Commit: e5d8db994dbf8f2831c05e36727ae2e2dcbe2427
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-26 13:18:37 -0700
Commit message:
Commit: e5d8db994dbf8f2831c05e36727ae2e2dcbe2427
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-26 13:18:37 -0700
Commit message:
sparse activity output
Package: epiregulon
Commit: e809c851e27569dd1f394ae7f4ec6b068a98c3e5
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-26 03:29:09 -0700
Commit message:
Commit: e809c851e27569dd1f394ae7f4ec6b068a98c3e5
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-26 03:29:09 -0700
Commit message:
preserve sparsity of activity matrix
Package: epiregulon
Commit: 1e6bcdeaf628007b9558f2bef212440aa129b2a9
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-26 03:27:16 -0700
Commit message:
Commit: 1e6bcdeaf628007b9558f2bef212440aa129b2a9
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-26 03:27:16 -0700
Commit message:
move scMultiome to the Suggests section
Package: epiregulon
Commit: 2a08833ce0c1672c198ed798dffd2296d715adf9
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-25 08:06:55 -0700
Commit message:
Commit: 2a08833ce0c1672c198ed798dffd2296d715adf9
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-25 08:06:55 -0700
Commit message:
reference to the final publication added
Package: epiregulon
Commit: 63181ee3ace55d629133a3a9ba8b1b4a2ae3740c
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-25 07:59:01 -0700
Commit message:
Commit: 63181ee3ace55d629133a3a9ba8b1b4a2ae3740c
Author: TomVuod <tomasz.wlodarczyk@contractors.roche.com>
Date: 2025-08-25 07:59:01 -0700
Commit message:
removal of scMultiome and AUCell from dependencies
Package: ChIPpeakAnno
Commit: 7fc2367f5aa77aa7eb5e13ef48a1b42016a16a6f
Author: Jianhong Ou <jianhong.ou@gmail.com>
Date: 2025-10-15 16:45:05 -0400
Commit message:
Commit: 7fc2367f5aa77aa7eb5e13ef48a1b42016a16a6f
Author: Jianhong Ou <jianhong.ou@gmail.com>
Date: 2025-10-15 16:45:05 -0400
Commit message:
Fix an issue for the corrdinates changes of GRCh37 annotation.
Package: Banksy
Commit: 081f51b4b41f26aa53158be0382b7b05cf620875
Author: jleechung <joseph.lee@u.nus.edu>
Date: 2025-10-15 13:02:50 -0700
Commit message:
Commit: 081f51b4b41f26aa53158be0382b7b05cf620875
Author: jleechung <joseph.lee@u.nus.edu>
Date: 2025-10-15 13:02:50 -0700
Commit message:
Include GenomeInfoDb
Package: UPDhmm
Commit: 34fc12a1aeea1beefab869152e0a1a697cdfe20a
Author: martasevill <martasevillaporras@gmail.com>
Date: 2025-10-15 17:19:37 +0200
Commit message:
Commit: 34fc12a1aeea1beefab869152e0a1a697cdfe20a
Author: martasevill <martasevillaporras@gmail.com>
Date: 2025-10-15 17:19:37 +0200
Commit message:
Update vignette
Package: UPDhmm
Commit: f4f8268e292bf9c9cf3cc21634e00f69f8a7e555
Author: martasevill <martasevillaporras@gmail.com>
Date: 2025-10-15 17:16:25 +0200
Commit message:
Commit: f4f8268e292bf9c9cf3cc21634e00f69f8a7e555
Author: martasevill <martasevillaporras@gmail.com>
Date: 2025-10-15 17:16:25 +0200
Commit message:
Regenerated documentation using devtools::document()
Package: UPDhmm
Commit: 395171cbe60405acca451d7161da245486edd8e0
Author: martasevilla <94392624+martasevilla@users.noreply.github.com>
Date: 2025-10-15 17:10:20 +0200
Commit message:
Commit: 395171cbe60405acca451d7161da245486edd8e0
Author: martasevilla <94392624+martasevilla@users.noreply.github.com>
Date: 2025-10-15 17:10:20 +0200
Commit message:
Update calculateEvents.R
Package: UPDhmm
Commit: 5c0abe80ad57a56535383a1ca9e8e55fbe0bae36
Author: martasevilla <94392624+martasevilla@users.noreply.github.com>
Date: 2025-10-15 17:09:11 +0200
Commit message:
Commit: 5c0abe80ad57a56535383a1ca9e8e55fbe0bae36
Author: martasevilla <94392624+martasevilla@users.noreply.github.com>
Date: 2025-10-15 17:09:11 +0200
Commit message:
Update UPDhmm.Rmd
Package: UPDhmm
Commit: 41ad076bc812a83d318db19581211f2e43a6a995
Author: martasevilla <94392624+martasevilla@users.noreply.github.com>
Date: 2025-10-13 20:34:35 +0200
Commit message:
Commit: 41ad076bc812a83d318db19581211f2e43a6a995
Author: martasevilla <94392624+martasevilla@users.noreply.github.com>
Date: 2025-10-13 20:34:35 +0200
Commit message:
Update NEWS.md
Package: UPDhmm
Commit: 8e501e2d1ff6ac2ff7bbbc5e3fe185df6e38625f
Author: martasevilla <94392624+martasevilla@users.noreply.github.com>
Date: 2025-10-13 20:34:03 +0200
Commit message:
Commit: 8e501e2d1ff6ac2ff7bbbc5e3fe185df6e38625f
Author: martasevilla <94392624+martasevilla@users.noreply.github.com>
Date: 2025-10-13 20:34:03 +0200
Commit message:
Update UPDhmm.Rmd latex error
Package: BatChef
Commit: 2caf97262f1a78a85f769d74ec756d05e0e8f235
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-15 16:44:47 +0200
Commit message:
Commit: 2caf97262f1a78a85f769d74ec756d05e0e8f235
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-15 16:44:47 +0200
Commit message:
Bump version: 0.99.4
Package: BatChef
Commit: 74959f32ada53a0104922f5b58ccaaaf24eb01ba
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-15 16:42:34 +0200
Commit message:
Commit: 74959f32ada53a0104922f5b58ccaaaf24eb01ba
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-15 16:42:34 +0200
Commit message:
Adding lightning_logs and .Rhistory to .Rbuildignore
Package: BatChef
Commit: 3478b1cf8c098a7bdbac6d8006fc6a23508774b2
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-15 16:12:42 +0200
Commit message:
Commit: 3478b1cf8c098a7bdbac6d8006fc6a23508774b2
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-15 16:12:42 +0200
Commit message:
Remove commented code
Package: BatChef
Commit: 5015878904e718aa9a1c26bad8898040e4b7d52d
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-15 16:11:32 +0200
Commit message:
Commit: 5015878904e718aa9a1c26bad8898040e4b7d52d
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-15 16:11:32 +0200
Commit message:
Solve errors in AnnDataR6 class
Package: BatChef
Commit: 68acd7f582dc84cb914034ffd7ad390020cbaf01
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-15 16:10:25 +0200
Commit message:
Commit: 68acd7f582dc84cb914034ffd7ad390020cbaf01
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-15 16:10:25 +0200
Commit message:
Update Python to version 3.12.3
Package: BatChef
Commit: 642c10e9a00361341ffad03a83acddce8bcaf901
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-14 09:03:27 +0200
Commit message:
Commit: 642c10e9a00361341ffad03a83acddce8bcaf901
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-14 09:03:27 +0200
Commit message:
Migration to basilisk 1.21
Package: BatChef
Commit: 5265b6067bc3ce1993c5709baed32ee1ab2a1074
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-14 09:02:53 +0200
Commit message:
Commit: 5265b6067bc3ce1993c5709baed32ee1ab2a1074
Author: zuinelena3 <elena.zuin3@gmail.com>
Date: 2025-10-14 09:02:53 +0200
Commit message:
Ignore Jujutsu files
Package: anndataR
Commit: 0aa9f49ca16baba87ef2855374aba93a7a0929e7
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-10-15 11:47:02 +0200
Commit message:
Commit: 0aa9f49ca16baba87ef2855374aba93a7a0929e7
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-10-15 11:47:02 +0200
Commit message:
Bump version to 0.99.3 (#370)
Package: anndataR
Commit: a37025c6442b7a77fb66ea1e52c551b95cb16b9e
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-10-13 13:23:34 +0200
Commit message:
Commit: a37025c6442b7a77fb66ea1e52c551b95cb16b9e
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-10-13 13:23:34 +0200
Commit message:
Add spell check and vignette links (#366) * Add spell check * Add links between vignettes * Fix typo Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com> * Update tests/spelling.R * Update tests/spelling.R * run air --------- Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
Package: anndataR
Commit: 2f31601946e1e7895ca7124ac010bfbe8aa8b0bd
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-10-10 15:41:53 +0200
Commit message:
Commit: 2f31601946e1e7895ca7124ac010bfbe8aa8b0bd
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-10-10 15:41:53 +0200
Commit message:
Update vignettes (#360) Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
Package: anndataR
Commit: fbac5d0dcbbb847fdb71c5de08692f8f9dd74e2c
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-10-09 12:34:55 +0200
Commit message:
Commit: fbac5d0dcbbb847fdb71c5de08692f8f9dd74e2c
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-10-09 12:34:55 +0200
Commit message:
Use `BiocFileCache` in Python vignette (#361) * Use BiocFileCache in Python vignette * Fix BiocFileCache package prefix * Lint
Package: anndataR
Commit: 1001ff7052d5f3198d540a512b2298126ddcc6f6
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-09-29 16:58:38 +0200
Commit message:
Commit: 1001ff7052d5f3198d540a512b2298126ddcc6f6
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-09-29 16:58:38 +0200
Commit message:
Run GitHub actions on devel branch (#359)
Package: anndataR
Commit: b86766856ec6684f68c78f6786e21548c6d6542a
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-09-29 15:31:47 +0200
Commit message:
Commit: b86766856ec6684f68c78f6786e21548c6d6542a
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-09-29 15:31:47 +0200
Commit message:
Avoid creating character datasets with LZF filter (#356) * Avoid creating character dataset with LZF filter * Enable LZF writing test * Update NEWS
Package: anndataR
Commit: 9bef9400eaf142769cd4eeb56bd8f6cc8b463248
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-09-25 11:24:47 +0200
Commit message:
Commit: 9bef9400eaf142769cd4eeb56bd8f6cc8b463248
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-09-25 11:24:47 +0200
Commit message:
Clarify `generate_dataset()` usage (#354) Fixes #343
Package: anndataR
Commit: e2f1bcfafbf67df14cf7b966b0c8644cf50d5cc5
Author: Robrecht Cannoodt <rcannood@gmail.com>
Date: 2025-09-24 16:53:46 +0200
Commit message:
Commit: e2f1bcfafbf67df14cf7b966b0c8644cf50d5cc5
Author: Robrecht Cannoodt <rcannood@gmail.com>
Date: 2025-09-24 16:53:46 +0200
Commit message:
Add reticulate backend (#322) * remove anndata (the R package) as a dependency * add ReticulateAnnData class * add tests * rename functions and files * rename helpers * rename test helper function * update class diagram * add vignette * add entry to NEWS * check python dependencies * to import r_to_py and py_to_r I guess we'll need to bump reticulate to imports * get rid of as_AnnData.anndata._core.anndata.AnnData * simplify class * update namespace * update vignette * update ignores * fix linting issues * install dummy_anndata * Apply suggestions from code review Co-authored-by: Luke Zappia <lazappi@users.noreply.github.com> * apply suggestions from review * simplify the py_to_r and r_to_py conversions * simplify reticulate helpers * update docs * try with py_require mudata * Update NEWS.md Co-authored-by: Luke Zappia <lazappi@users.noreply.github.com> --------- Co-authored-by: Luke Zappia <lazappi@users.noreply.github.com>
Package: anndataR
Commit: 94c48d51ab82af6a8b7737c754810ff8d97ca0ac
Author: Robrecht Cannoodt <rcannood@gmail.com>
Date: 2025-09-23 17:18:56 +0200
Commit message:
Commit: 94c48d51ab82af6a8b7737c754810ff8d97ca0ac
Author: Robrecht Cannoodt <rcannood@gmail.com>
Date: 2025-09-23 17:18:56 +0200
Commit message:
Implement AbstractAnnData S3 methods and lazy subsetting (#324) * add viewanndata class * WIP add s3 methods * update * fix formatting * rename class * apply suggestions from meeting * don't add view to constructors * fix constructors * fix docs * update diagram * update vignette * fix linting issues * update news * fix s3 methods * fix message * wip fix dimname issues * fix docs * update news * Apply suggestions from code review Co-authored-by: Luke Zappia <lazappi@users.noreply.github.com> * fix roxygen * add details about subsetting * provide more descriptive error * rename file * use generators * fix bug with sparse matrices not being subset * also test numeric and character subsetting * improve test intent * subset same dimension multiple times * test other slots as well * get rid of useless comments * fix setting rownames to NULL, check resulting values * access more fields * print baseclass * Fix tests * Apply suggestions from code review Co-authored-by: Luke Zappia <lazappi@users.noreply.github.com> * Apply more suggestions from code review * fix tests * fix linting issues * fix tests * suppress startup messages --------- Co-authored-by: Luke Zappia <lazappi@users.noreply.github.com>
Package: anndataR
Commit: a1b11a247a8af8c02b3d3c77419ed315547575e6
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-09-22 22:12:55 +0200
Commit message:
Commit: a1b11a247a8af8c02b3d3c77419ed315547575e6
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-09-22 22:12:55 +0200
Commit message:
Add citation (#351) * Add CITATION file * Add citation to README * Add citation to main vignette * Update NEWS * Revert accidental changes to read_hdf5_helpers.R * Actually update NEWS
Package: anndataR
Commit: f67e8f7abf565043aa087a809fb8a7538d3f77fd
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-09-15 08:32:34 +0200
Commit message:
Commit: f67e8f7abf565043aa087a809fb8a7538d3f77fd
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-09-15 08:32:34 +0200
Commit message:
Bump RoxygenNote in DESCRIPTION to 7.3.3 (#335)
Package: anndataR
Commit: d72e02d34c1a7f69fb536e11e0f7e9a1baafa1ce
Author: Robrecht Cannoodt <rcannood@gmail.com>
Date: 2025-09-11 11:24:36 +0200
Commit message:
Commit: d72e02d34c1a7f69fb536e11e0f7e9a1baafa1ce
Author: Robrecht Cannoodt <rcannood@gmail.com>
Date: 2025-09-11 11:24:36 +0200
Commit message:
Refactor obs/var_names handling (#328) * fix error message * don't try to use s3 functions which aren't actually implemented * add missing compression arguments * use pipe notation * add comment * add news * fix missing value * expand varm coming from seurat * update test Signed-off-by: Robrecht Cannoodt <rcannood@gmail.com> * fix warnings Signed-off-by: Robrecht Cannoodt <rcannood@gmail.com> * don't store obs/varnames on structs, but do return them from struct getters * fix tests * fix linting issues * update news * Apply suggestions from review * Update tests/testthat/test-from_Seurat.R * Update R/from_Seurat.R Co-authored-by: Luke Zappia <lazappi@users.noreply.github.com> * fix warning * fix warnings * Adjust varm expansion regex in test-from_Seurat * Suppress Seurat uwot warning in test-from_Seurat --------- Signed-off-by: Robrecht Cannoodt <rcannood@gmail.com> Co-authored-by: Luke Zappia <lazappi@users.noreply.github.com> Co-authored-by: Luke Zappia <luke@data-intuitive.com>
Package: anndataR
Commit: 37003bfd011a329e58f72ba0fcc7e7329e5717b1
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-08-25 08:19:01 +0200
Commit message:
Commit: 37003bfd011a329e58f72ba0fcc7e7329e5717b1
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-08-25 08:19:01 +0200
Commit message:
Fix generation issues (#320) * Update logical vector generation to match Python * Remove integer_dense generators * Adjust varm/obsm dimensions in generate_dataset() * Handle empty types in generate_dataframe() Return an empty data.frame with the correct number of rows * Add tests for fixed generation issues * Remove workarounds in tests for generation issues
Package: anndataR
Commit: 39bc1a31c56d989c7ace8c6e0a22acc05b33d6eb
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-08-23 06:49:38 +0200
Commit message:
Commit: 39bc1a31c56d989c7ace8c6e0a22acc05b33d6eb
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-08-23 06:49:38 +0200
Commit message:
Fix note about missing man page section (#321)
Package: MLInterfaces
Commit: 52321ff6866447790dcd3b6ee9f5d75171868395
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-10-15 08:27:35 -0400
Commit message:
Commit: 52321ff6866447790dcd3b6ee9f5d75171868395
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-10-15 08:27:35 -0400
Commit message:
mention SE handling in MLearn man page
Package: MLInterfaces
Commit: ea179ddea7443dfa5ce466802fb24916c9b71bcf
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-10-15 08:26:40 -0400
Commit message:
Commit: ea179ddea7443dfa5ce466802fb24916c9b71bcf
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-10-15 08:26:40 -0400
Commit message:
improve handling of SummarizedExperiment MLearn
Package: scGraphVerse
Commit: ae96184192ff7af6916e2d85aa6382bd211c1665
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 13:22:42 +0200
Commit message:
Commit: ae96184192ff7af6916e2d85aa6382bd211c1665
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 13:22:42 +0200
Commit message:
fix doRNG
Package: scGraphVerse
Commit: 44e7369dabf306b87de451e8df3d157e280a0ebc
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 12:17:42 +0200
Commit message:
Commit: 44e7369dabf306b87de451e8df3d157e280a0ebc
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 12:17:42 +0200
Commit message:
fix doRNG
Package: blase
Commit: 15b9ddfa19ff6b3bcb1c1742c104b1e7a5f1b9e7
Author: Andrew McCluskey <andrew@cluskii.com>
Date: 2025-10-15 10:31:32 +0100
Commit message:
Commit: 15b9ddfa19ff6b3bcb1c1742c104b1e7a5f1b9e7
Author: Andrew McCluskey <andrew@cluskii.com>
Date: 2025-10-15 10:31:32 +0100
Commit message:
bump to 0.99.5
Package: blase
Commit: c79bca10af07673406f76c997c34e95491b11e09
Author: Andrew McCluskey <andrew@cluskii.com>
Date: 2025-10-15 10:30:45 +0100
Commit message:
Commit: c79bca10af07673406f76c997c34e95491b11e09
Author: Andrew McCluskey <andrew@cluskii.com>
Date: 2025-10-15 10:30:45 +0100
Commit message:
Remove GenomeInfoDb to suggests list
Package: blase
Commit: 4fd070c053a44aca6b16abf0e445c5a9087782d4
Author: Andrew McCluskey <2117532m@todata1.mvls.gla.ac.uk>
Date: 2025-10-15 10:26:51 +0100
Commit message:
Commit: 4fd070c053a44aca6b16abf0e445c5a9087782d4
Author: Andrew McCluskey <2117532m@todata1.mvls.gla.ac.uk>
Date: 2025-10-15 10:26:51 +0100
Commit message:
Merge remote-tracking branch 'upstream/devel'
Package: blase
Commit: 608ea6bb32a2f7b4278ffc7775fb4f17bdf48812
Author: Andrew McCluskey <andrew@cluskii.com>
Date: 2025-10-15 10:18:23 +0100
Commit message:
Commit: 608ea6bb32a2f7b4278ffc7775fb4f17bdf48812
Author: Andrew McCluskey <andrew@cluskii.com>
Date: 2025-10-15 10:18:23 +0100
Commit message:
Add GenomeInfoDb to suggests list
Package: scGraphVerse
Commit: 6769aa9552e10f59cc821ebb227ef2c798236cf8
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 11:18:49 +0200
Commit message:
Commit: 6769aa9552e10f59cc821ebb227ef2c798236cf8
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 11:18:49 +0200
Commit message:
version
Package: scGraphVerse
Commit: 14e07860298fa10baa92845c8d814f365d3412da
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:17:36 +0200
Commit message:
Commit: 14e07860298fa10baa92845c8d814f365d3412da
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:17:36 +0200
Commit message:
fix jrf
Package: scGraphVerse
Commit: 564843408f03f35b7149ace1343e35da850e6610
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:12:37 +0200
Commit message:
Commit: 564843408f03f35b7149ace1343e35da850e6610
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:12:37 +0200
Commit message:
fix jrf
Package: scGraphVerse
Commit: 6759790069425d6917137ce19cb05dd7274ccfbe
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:08:50 +0200
Commit message:
Commit: 6759790069425d6917137ce19cb05dd7274ccfbe
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:08:50 +0200
Commit message:
onload c
Package: scGraphVerse
Commit: d213a3567fa775f11f84eeed8334efece47818c0
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:05:03 +0200
Commit message:
Commit: d213a3567fa775f11f84eeed8334efece47818c0
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:05:03 +0200
Commit message:
jrf fix
Package: scGraphVerse
Commit: 4ed1dcb1623de98d27997847d228203aca41fa6f
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:02:39 +0200
Commit message:
Commit: 4ed1dcb1623de98d27997847d228203aca41fa6f
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:02:39 +0200
Commit message:
fix internal jrf
Package: scGraphVerse
Commit: ddfbfa99ed06c47462709f028adf0e1939baa9c4
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:00:11 +0200
Commit message:
Commit: ddfbfa99ed06c47462709f028adf0e1939baa9c4
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 01:00:11 +0200
Commit message:
add dynlib
Package: scGraphVerse
Commit: d5b377e0bd1fb64baa8adedab400e77cf1f41f70
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 00:56:19 +0200
Commit message:
Commit: d5b377e0bd1fb64baa8adedab400e77cf1f41f70
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 00:56:19 +0200
Commit message:
fix dynlib
Package: scGraphVerse
Commit: 3dc916fb680e7846a7c7fd0219a6093a425188ca
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 00:49:12 +0200
Commit message:
Commit: 3dc916fb680e7846a7c7fd0219a6093a425188ca
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 00:49:12 +0200
Commit message:
fix dynsym
Package: scGraphVerse
Commit: e25494503b87da576f40977fe5df4527e407a480
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 00:35:53 +0200
Commit message:
Commit: e25494503b87da576f40977fe5df4527e407a480
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 00:35:53 +0200
Commit message:
ren html vignette
Package: scGraphVerse
Commit: 7154dceb0834aa3ae8a67019eb6cb563b54baa2f
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 00:35:11 +0200
Commit message:
Commit: 7154dceb0834aa3ae8a67019eb6cb563b54baa2f
Author: francescoc <francesco.cecerengs@gmail.com>
Date: 2025-10-15 00:35:11 +0200
Commit message:
fix src
Package: muscat
Commit: 8bb91e1ba9c9b7deba5e37c6a1d8c539b768778c
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 10:02:09 +0200
Commit message:
Commit: 8bb91e1ba9c9b7deba5e37c6a1d8c539b768778c
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 10:02:09 +0200
Commit message:
fix pbDS() filtering test
Package: muscat
Commit: 49632ed400583c652d190e77970d9b40ea4a1cad
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 10:01:53 +0200
Commit message:
Commit: 49632ed400583c652d190e77970d9b40ea4a1cad
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 10:01:53 +0200
Commit message:
add v1.23.2 changes
Package: muscat
Commit: 54d583647c4d16d286b95c782bc15d8617deee8b
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 09:55:28 +0200
Commit message:
Commit: 54d583647c4d16d286b95c782bc15d8617deee8b
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 09:55:28 +0200
Commit message:
Merge remote-tracking branch 'upstream/devel' into devel
Package: muscat
Commit: d0c35a8d947a97cfbb10cde8a9c0914ccad4f9a2
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 09:52:52 +0200
Commit message:
Commit: d0c35a8d947a97cfbb10cde8a9c0914ccad4f9a2
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 09:52:52 +0200
Commit message:
added v1.23.2 changes
Package: muscat
Commit: e46a084b714b526d45f2433d859e428629df0ac0
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 09:52:37 +0200
Commit message:
Commit: e46a084b714b526d45f2433d859e428629df0ac0
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 09:52:37 +0200
Commit message:
v1.23.1 -> .2
Package: muscat
Commit: a367dc313a938943afa3aa987f40ca32585f5631
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 09:50:00 +0200
Commit message:
Commit: a367dc313a938943afa3aa987f40ca32585f5631
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 09:50:00 +0200
Commit message:
+missing importFrom
Package: muscat
Commit: ae9c366d8738de1d2d0e061d916b343a5b135f08
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 09:49:34 +0200
Commit message:
Commit: ae9c366d8738de1d2d0e061d916b343a5b135f08
Author: HelenaLC <helena@crowell.eu>
Date: 2025-10-15 09:49:34 +0200
Commit message:
fix SerialParam arg name
Package: limpa
Commit: dcc49aa3696b16ed78097ac7b68b5e2eaf73aadd
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2025-10-15 18:32:46 +1100
Commit message:
Commit: dcc49aa3696b16ed78097ac7b68b5e2eaf73aadd
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2025-10-15 18:32:46 +1100
Commit message:
limpa 1.1.7 - New functions readFragPipe and readMaxQuant - Bug fix to readDIANN
Package: ChIPseeker
Commit: 9e93d1de87c3bb304d46bc7b3fcfb017a25c235e
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-15 14:06:26 +0800
Commit message:
Commit: 9e93d1de87c3bb304d46bc7b3fcfb017a25c235e
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-15 14:06:26 +0800
Commit message:
fixed typo
Package: ChIPseeker
Commit: a990ab3af0d9405b7846669fc55d1822f41aafcd
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-15 14:04:01 +0800
Commit message:
Commit: a990ab3af0d9405b7846669fc55d1822f41aafcd
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-15 14:04:01 +0800
Commit message:
Merge pull request #262 from MingLi-929/devel update env function
Package: ChIPseeker
Commit: 48c64968e0a74aaf2b56f4a16a48d9b7ff4fc558
Author: MingLi-929 <78794151+MingLi-929@users.noreply.github.com>
Date: 2025-10-15 12:52:13 +0800
Commit message:
Commit: 48c64968e0a74aaf2b56f4a16a48d9b7ff4fc558
Author: MingLi-929 <78794151+MingLi-929@users.noreply.github.com>
Date: 2025-10-15 12:52:13 +0800
Commit message:
Merge branch 'YuLab-SMU:devel' into devel
Package: ChIPseeker
Commit: b7f50bac0f827cd31f85e936f9679c1f4fce4e1e
Author: liming <limiang929@gmail.com>
Date: 2025-10-15 12:51:29 +0800
Commit message:
Commit: b7f50bac0f827cd31f85e936f9679c1f4fce4e1e
Author: liming <limiang929@gmail.com>
Date: 2025-10-15 12:51:29 +0800
Commit message:
update env fucntion
Package: Pirat
Commit: 1aeea24bb39f90278b5f28ce8bbc26873541f52d
Author: Lucas Etourneau <lucas.etourneau@berkeley.edu>
Date: 2025-10-14 22:09:50 -0700
Commit message:
Commit: 1aeea24bb39f90278b5f28ce8bbc26873541f52d
Author: Lucas Etourneau <lucas.etourneau@berkeley.edu>
Date: 2025-10-14 22:09:50 -0700
Commit message:
Remove python
Package: ChIPseeker
Commit: ae45a65447c5ab3ac4fd88bc6faea6f3fece736f
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-15 12:47:28 +0800
Commit message:
Commit: ae45a65447c5ab3ac4fd88bc6faea6f3fece736f
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-15 12:47:28 +0800
Commit message:
bump version
Package: ChIPseeker
Commit: 5882c886c33a004045f2738fd460f235042d8ff6
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-15 11:51:26 +0800
Commit message:
Commit: 5882c886c33a004045f2738fd460f235042d8ff6
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-10-15 11:51:26 +0800
Commit message:
Merge pull request #261 from MingLi-929/devel update environment function
Package: ChIPseeker
Commit: 89fe5ef1f9e8ed921dc6f9f8edc8b00e9571974a
Author: liming <limiang929@gmail.com>
Date: 2025-10-15 11:42:49 +0800
Commit message:
Commit: 89fe5ef1f9e8ed921dc6f9f8edc8b00e9571974a
Author: liming <limiang929@gmail.com>
Date: 2025-10-15 11:42:49 +0800
Commit message:
set item for global
Package: ChIPseeker
Commit: 1b6dae7bd782f579c78f3106deaa615e25f6b9b5
Author: liming <limiang929@gmail.com>
Date: 2025-10-15 11:16:08 +0800
Commit message:
Commit: 1b6dae7bd782f579c78f3106deaa615e25f6b9b5
Author: liming <limiang929@gmail.com>
Date: 2025-10-15 11:16:08 +0800
Commit message:
explicit call item
Package: ChIPseeker
Commit: 56d9bd3b00d73577a31c7078192d787c04174996
Author: liming <limiang929@gmail.com>
Date: 2025-10-14 21:23:59 +0800
Commit message:
Commit: 56d9bd3b00d73577a31c7078192d787c04174996
Author: liming <limiang929@gmail.com>
Date: 2025-10-14 21:23:59 +0800
Commit message:
update
Package: ChIPseeker
Commit: 181f2713306b5d543dbb2f56c99200502198e20b
Author: liming <limiang929@gmail.com>
Date: 2025-10-14 20:37:20 +0800
Commit message:
Commit: 181f2713306b5d543dbb2f56c99200502198e20b
Author: liming <limiang929@gmail.com>
Date: 2025-10-14 20:37:20 +0800
Commit message:
update environment function
Package: ChIPseeker
Commit: 74e6634cc411f827831d704e73e2958499dc38b9
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-04-17 09:41:52 +0800
Commit message:
Commit: 74e6634cc411f827831d704e73e2958499dc38b9
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-04-17 09:41:52 +0800
Commit message:
update bioc version
Package: ChIPseeker
Commit: 8acf6d5f6c884a8d1df685431f4a18ed77bf3578
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-04-17 09:41:47 +0800
Commit message:
Commit: 8acf6d5f6c884a8d1df685431f4a18ed77bf3578
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-04-17 09:41:47 +0800
Commit message:
Merge remote-tracking branch 'upstream/devel' into devel
Package: ChIPseeker
Commit: ad1811482861e4bd4523675087f5afb0e9bfeca8
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-02-05 00:18:15 +0800
Commit message:
Commit: ad1811482861e4bd4523675087f5afb0e9bfeca8
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-02-05 00:18:15 +0800
Commit message:
update
Package: ChIPseeker
Commit: 87df7b4f19a221fdbbac330409354686b2471a10
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-01-29 15:55:55 +0800
Commit message:
Commit: 87df7b4f19a221fdbbac330409354686b2471a10
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-01-29 15:55:55 +0800
Commit message:
update
Package: ChIPseeker
Commit: 7c80dbb86227df936db13f86655d21e54fd1729b
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-01-07 10:37:30 +0800
Commit message:
Commit: 7c80dbb86227df936db13f86655d21e54fd1729b
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2025-01-07 10:37:30 +0800
Commit message:
update
Package: ChIPseeker
Commit: 788cd608863372353c816d24910cb96dd9893b9c
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2024-10-30 12:10:01 +0800
Commit message:
Commit: 788cd608863372353c816d24910cb96dd9893b9c
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2024-10-30 12:10:01 +0800
Commit message:
update bioc version
Package: sevenC
Commit: 20cdef676be6c61f9bad7f6253fac5945bed18e9
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 02:09:36 +0200
Commit message:
Commit: 20cdef676be6c61f9bad7f6253fac5945bed18e9
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 02:09:36 +0200
Commit message:
fix version
Package: sevenC
Commit: 660e239962eb809f5d11ff16782097a5cc737beb
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 02:06:30 +0200
Commit message:
Commit: 660e239962eb809f5d11ff16782097a5cc737beb
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 02:06:30 +0200
Commit message:
bump version to 1.31.1
Package: sevenC
Commit: a1ffaabd5b86a942159082b6a33c06e67b721ced
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 01:39:39 +0200
Commit message:
Commit: a1ffaabd5b86a942159082b6a33c06e67b721ced
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 01:39:39 +0200
Commit message:
update doc and pkgdown index
Package: sevenC
Commit: 3ecbffb74821c63fb4616e7d0b24517a4913fa0b
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 01:39:20 +0200
Commit message:
Commit: 3ecbffb74821c63fb4616e7d0b24517a4913fa0b
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 01:39:20 +0200
Commit message:
update citation in README
Package: sevenC
Commit: 5dbd06576113dda97355dc1445ea2e566a1a33a0
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 01:36:14 +0200
Commit message:
Commit: 5dbd06576113dda97355dc1445ea2e566a1a33a0
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 01:36:14 +0200
Commit message:
update citation
Package: sevenC
Commit: 4faaf13ff16119c17ce5085036e084df02c28bde
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 01:20:41 +0200
Commit message:
Commit: 4faaf13ff16119c17ce5085036e084df02c28bde
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 01:20:41 +0200
Commit message:
fix addCovToGR() to make use correctly of Seqinfo functions
Package: sevenC
Commit: 2c643173154ff873af1cbb8d1b2f519d39dca1b2
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 01:19:06 +0200
Commit message:
Commit: 2c643173154ff873af1cbb8d1b2f519d39dca1b2
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 01:19:06 +0200
Commit message:
typo fixes in comments
Package: sevenC
Commit: 03e858d4e260826e1fe2878307eff2bd836a99e3
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 00:50:34 +0200
Commit message:
Commit: 03e858d4e260826e1fe2878307eff2bd836a99e3
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 00:50:34 +0200
Commit message:
fix DESCRIPTION file
Package: sevenC
Commit: 2b20ff81024a8d3bbc1f57e370e711de46756a4f
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 00:42:51 +0200
Commit message:
Commit: 2b20ff81024a8d3bbc1f57e370e711de46756a4f
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 00:42:51 +0200
Commit message:
merge dev into devel with recent chnages
Package: sevenC
Commit: d21cb577ed2f57fb327edc750b03a3be02def6ae
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 00:37:55 +0200
Commit message:
Commit: d21cb577ed2f57fb327edc750b03a3be02def6ae
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 00:37:55 +0200
Commit message:
update badges in README
Package: sevenC
Commit: 2a31692468457c816b70997eb10eddd867556735
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 00:32:34 +0200
Commit message:
Commit: 2a31692468457c816b70997eb10eddd867556735
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 00:32:34 +0200
Commit message:
Increment version number to 1.3.1
Package: sevenC
Commit: 064aa046709a2e447b1586e0270da0fb10b82517
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 00:28:08 +0200
Commit message:
Commit: 064aa046709a2e447b1586e0270da0fb10b82517
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-15 00:28:08 +0200
Commit message:
remove windows from CI
Package: sevenC
Commit: f1d8f7ed067fc182f537d81d4d4a7886b2e1d3d7
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-14 23:44:34 +0200
Commit message:
Commit: f1d8f7ed067fc182f537d81d4d4a7886b2e1d3d7
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-14 23:44:34 +0200
Commit message:
add github action for bioc
Package: sevenC
Commit: 4b64bf6ad160394433439220234a6c986e8f76d2
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-14 23:44:03 +0200
Commit message:
Commit: 4b64bf6ad160394433439220234a6c986e8f76d2
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-14 23:44:03 +0200
Commit message:
update badges in README
Package: sevenC
Commit: f463de96c378b988d594de09ba34a3fbdd2b83fb
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-14 22:41:38 +0200
Commit message:
Commit: f463de96c378b988d594de09ba34a3fbdd2b83fb
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-14 22:41:38 +0200
Commit message:
use README.Rmd as srouce for README.md
Package: sevenC
Commit: 7575d6ed8c6386452d0403d7ec3f9c80ce9329fd
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-14 22:33:09 +0200
Commit message:
Commit: 7575d6ed8c6386452d0403d7ec3f9c80ce9329fd
Author: Jonas Ibn-Salem <jonas.ibn-salem@tron-mainz.de>
Date: 2025-10-14 22:33:09 +0200
Commit message:
update doc by roxygen2 version update
Package: consensusSeekeR
Commit: 75220de8ce7aeb84587d28acab0bca7e44f09751
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 17:11:32 -0400
Commit message:
Commit: 75220de8ce7aeb84587d28acab0bca7e44f09751
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 17:11:32 -0400
Commit message:
Version bump in devel
Package: consensusSeekeR
Commit: 556c50aa2ddfb59ed99484a02bde5a7f7676c42f
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 16:54:19 -0400
Commit message:
Commit: 556c50aa2ddfb59ed99484a02bde5a7f7676c42f
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 16:54:19 -0400
Commit message:
Update workflows to use devel bioconductor
Package: consensusSeekeR
Commit: ac09cf56b76cf65edb10d12561b6935e32eb8918
Author: adeschen <adeschen@hotmail.com>
Date: 2025-10-14 16:50:08 -0400
Commit message:
Commit: ac09cf56b76cf65edb10d12561b6935e32eb8918
Author: adeschen <adeschen@hotmail.com>
Date: 2025-10-14 16:50:08 -0400
Commit message:
Merge remote-tracking branch 'upstream/devel'
Package: consensusSeekeR
Commit: 8e8baf8599a828183a68bbc699e9e34aa53466d7
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 16:33:23 -0400
Commit message:
Commit: 8e8baf8599a828183a68bbc699e9e34aa53466d7
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 16:33:23 -0400
Commit message:
Update check-bioc workflow
Package: consensusSeekeR
Commit: 3dae6b28a2225d0ffc1ce4716c84ce8e5e4dec5b
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 16:33:04 -0400
Commit message:
Commit: 3dae6b28a2225d0ffc1ce4716c84ce8e5e4dec5b
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 16:33:04 -0400
Commit message:
Correct use of itemize in dataset documentation
Package: consensusSeekeR
Commit: 8a62b6f1e45bdfe090ad47b255ce713e29c6c42b
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 16:23:57 -0400
Commit message:
Commit: 8a62b6f1e45bdfe090ad47b255ce713e29c6c42b
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 16:23:57 -0400
Commit message:
Update check-bioc workflow
Package: consensusSeekeR
Commit: be1938bd05ffa4684105e9ec77cf14ea5d22e4f8
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 16:23:38 -0400
Commit message:
Commit: be1938bd05ffa4684105e9ec77cf14ea5d22e4f8
Author: Astrid Deschenes <adeschen@hotmail.com>
Date: 2025-10-14 16:23:38 -0400
Commit message:
Correct use of itemize in dataset documentation
Package: MAST
Commit: 347a71cc8cc61567425154743dbaf55a9f1f34b7
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2025-10-14 14:04:47 -0700
Commit message:
Commit: 347a71cc8cc61567425154743dbaf55a9f1f34b7
Author: Andrew McDavid <andrew.n.mcdavid@gmail.com>
Date: 2025-10-14 14:04:47 -0700
Commit message:
bump version
Package: scp
Commit: 3ef39c3278c335a3662e82820b6c650c86253892
Author: Laurent Gatto <lgatto@protonmail.ch>
Date: 2025-10-14 22:15:34 +0200
Commit message:
Commit: 3ef39c3278c335a3662e82820b6c650c86253892
Author: Laurent Gatto <lgatto@protonmail.ch>
Date: 2025-10-14 22:15:34 +0200
Commit message:
udpate news
Package: scp
Commit: 18482edf4df3afc048efbd338e62e15f6f50adec
Author: Laurent Gatto <lgatto@protonmail.ch>
Date: 2025-10-14 22:14:22 +0200
Commit message:
Commit: 18482edf4df3afc048efbd338e62e15f6f50adec
Author: Laurent Gatto <lgatto@protonmail.ch>
Date: 2025-10-14 22:14:22 +0200
Commit message:
Merge branch 'devel'
Package: scp
Commit: 5f83c8120f93612826caa6a30b48f845f931fdb6
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2025-09-14 22:20:30 +0200
Commit message:
Commit: 5f83c8120f93612826caa6a30b48f845f931fdb6
Author: Laurent Gatto <laurent.gatto@uclouvain.be>
Date: 2025-09-14 22:20:30 +0200
Commit message:
Update check-bioc.yml bump cache-version
Package: spicyR
Commit: 02e127ae89f71371be2353bbebdbcfb73e41dd1e
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:09:21 -0700
Commit message:
Commit: 02e127ae89f71371be2353bbebdbcfb73e41dd1e
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:09:21 -0700
Commit message:
spicyR 1.21.9 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: tricycle
Commit: 978fa4db48c6398d5a6ff08aff3119ffda69cac9
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:04:44 -0700
Commit message:
Commit: 978fa4db48c6398d5a6ff08aff3119ffda69cac9
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:04:44 -0700
Commit message:
tricycle 1.17.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: tidySingleCellExperiment
Commit: 3e62047ab2e9dd0ad93528ea15c552cff0111db8
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:04:24 -0700
Commit message:
Commit: 3e62047ab2e9dd0ad93528ea15c552cff0111db8
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:04:24 -0700
Commit message:
tidySingleCellExperiment 1.19.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: SVP
Commit: 9c5839c9c3edc05659944c0015e4799f11a8b64a
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:04:13 -0700
Commit message:
Commit: 9c5839c9c3edc05659944c0015e4799f11a8b64a
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:04:13 -0700
Commit message:
SVP 1.1.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: Statial
Commit: 4e7a44d54026d5d5b6cfb5f1aea24b02b1ea73ea
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:03:12 -0700
Commit message:
Commit: 4e7a44d54026d5d5b6cfb5f1aea24b02b1ea73ea
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:03:12 -0700
Commit message:
Statial 1.11.7 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: SpotSweeper
Commit: ad0acc61f10f29b58c6dad65188159caafdaf1e9
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:02:46 -0700
Commit message:
Commit: ad0acc61f10f29b58c6dad65188159caafdaf1e9
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:02:46 -0700
Commit message:
SpotSweeper 1.5.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: SPIAT
Commit: f176e3b5c1338c593712fcb14dc8bb61a806663c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:01:30 -0700
Commit message:
Commit: f176e3b5c1338c593712fcb14dc8bb61a806663c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:01:30 -0700
Commit message:
SPIAT 1.11.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: speckle
Commit: f695710b5131316323a398ad282e416a73c7ed04
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:01:16 -0700
Commit message:
Commit: f695710b5131316323a398ad282e416a73c7ed04
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:01:16 -0700
Commit message:
speckle 1.9.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: spatialHeatmap
Commit: 478e1abe2f9436fb912691e5a0d435d11dde3a7f
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:01:03 -0700
Commit message:
Commit: 478e1abe2f9436fb912691e5a0d435d11dde3a7f
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:01:03 -0700
Commit message:
spatialHeatmap 2.15.2 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: SpaNorm
Commit: 03903597b59dfe51a90d8fc900e0e76a52abea3d
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:00:45 -0700
Commit message:
Commit: 03903597b59dfe51a90d8fc900e0e76a52abea3d
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:00:45 -0700
Commit message:
SpaNorm 1.3.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: sosta
Commit: aef9e035a59a4484d8d129706acb19e87a3cb87f
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:00:13 -0700
Commit message:
Commit: aef9e035a59a4484d8d129706acb19e87a3cb87f
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 12:00:13 -0700
Commit message:
sosta 1.1.2 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: slalom
Commit: 12e6171eb51009f916752fed4d4f2971cec0339c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:59:59 -0700
Commit message:
Commit: 12e6171eb51009f916752fed4d4f2971cec0339c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:59:59 -0700
Commit message:
slalom 1.31.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: scReClassify
Commit: 09f3c311c25d0dc0b4bc85f102fc663a077a26d6
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:59:18 -0700
Commit message:
Commit: 09f3c311c25d0dc0b4bc85f102fc663a077a26d6
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:59:18 -0700
Commit message:
scReClassify 1.15.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: scp
Commit: 86a35abc72eff324627b3f484529d870b58df5ea
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:59:05 -0700
Commit message:
Commit: 86a35abc72eff324627b3f484529d870b58df5ea
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:59:05 -0700
Commit message:
scp 1.19.5 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: scMerge
Commit: 49cb40cad266da845f3326b2e562d4514a29dc70
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:58:51 -0700
Commit message:
Commit: 49cb40cad266da845f3326b2e562d4514a29dc70
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:58:51 -0700
Commit message:
scMerge 1.25.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: scider
Commit: d9229d06607fc52ae26a2f54dbe78ad2e1c840bb
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:58:38 -0700
Commit message:
Commit: d9229d06607fc52ae26a2f54dbe78ad2e1c840bb
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:58:38 -0700
Commit message:
scider 1.7.3 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: scds
Commit: c75fb2d2e8068e98e0eebbc0ea178f0ae6670816
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:58:23 -0700
Commit message:
Commit: c75fb2d2e8068e98e0eebbc0ea178f0ae6670816
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:58:23 -0700
Commit message:
scds 1.25.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: scDesign3
Commit: 36405f045c730ac1b41906e90b0b4c014f6e7ec3
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:58:09 -0700
Commit message:
Commit: 36405f045c730ac1b41906e90b0b4c014f6e7ec3
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:58:09 -0700
Commit message:
scDesign3 1.7.7 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: scDD
Commit: fc813951d19dd83e5417d38280c77ebbe45ee291
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:57:58 -0700
Commit message:
Commit: fc813951d19dd83e5417d38280c77ebbe45ee291
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:57:58 -0700
Commit message:
scDD 1.33.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: scDataviz
Commit: e3d0b7ba6ff130e45650c04c08f646d51027d494
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:57:47 -0700
Commit message:
Commit: e3d0b7ba6ff130e45650c04c08f646d51027d494
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:57:47 -0700
Commit message:
scDataviz 1.19.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: RegionalST
Commit: 2d8f9b1b72d252d4ab8bde9b2e9725fc11ac7691
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:57:35 -0700
Commit message:
Commit: 2d8f9b1b72d252d4ab8bde9b2e9725fc11ac7691
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:57:35 -0700
Commit message:
RegionalST 1.7.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: POWSC
Commit: 59a3f5f0dbd478b7aab6ba0142530364b89dd623
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:57:21 -0700
Commit message:
Commit: 59a3f5f0dbd478b7aab6ba0142530364b89dd623
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:57:21 -0700
Commit message:
POWSC 1.17.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: peco
Commit: c6caf77954baf91af7a7ddaf5396a10bb56697c2
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:56:11 -0700
Commit message:
Commit: c6caf77954baf91af7a7ddaf5396a10bb56697c2
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:56:11 -0700
Commit message:
peco 1.21.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: muscat
Commit: 7d68329bf1cd13fc6cda2a8f857bf90a605200e9
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:55:59 -0700
Commit message:
Commit: 7d68329bf1cd13fc6cda2a8f857bf90a605200e9
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:55:59 -0700
Commit message:
muscat 1.23.2 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: miaTime
Commit: 8969362dea7672e9b86fd2c78324afa9b2f23624
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:55:10 -0700
Commit message:
Commit: 8969362dea7672e9b86fd2c78324afa9b2f23624
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:55:10 -0700
Commit message:
miaTime 0.99.13 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: mia
Commit: fd52449ef62ba3fb648898513c865f340f54c2ff
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:54:48 -0700
Commit message:
Commit: fd52449ef62ba3fb648898513c865f340f54c2ff
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:54:48 -0700
Commit message:
mia 1.17.10 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: MGnifyR
Commit: 02d038484743b8123f7b68ccfa2d11c45d53da89
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:54:31 -0700
Commit message:
Commit: 02d038484743b8123f7b68ccfa2d11c45d53da89
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:54:31 -0700
Commit message:
MGnifyR 1.5.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: MEB
Commit: ab9309973fe9339fd760f1aa3661b08fda463b49
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:54:18 -0700
Commit message:
Commit: ab9309973fe9339fd760f1aa3661b08fda463b49
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:54:18 -0700
Commit message:
MEB 1.23.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: lemur
Commit: 15a521f5b9bf115d351eb7959eca6e5cc2608427
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:54:06 -0700
Commit message:
Commit: 15a521f5b9bf115d351eb7959eca6e5cc2608427
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:54:06 -0700
Commit message:
lemur 1.7.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: jazzPanda
Commit: 9189e4a8557d21e559294d9dcfdbb40285e8969e
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:53:47 -0700
Commit message:
Commit: 9189e4a8557d21e559294d9dcfdbb40285e8969e
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:53:47 -0700
Commit message:
jazzPanda 1.1.3 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: Ibex
Commit: dfbba5a67050a5f8e18b4cc9a13ecdb17ac47514
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:52:14 -0700
Commit message:
Commit: dfbba5a67050a5f8e18b4cc9a13ecdb17ac47514
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:52:14 -0700
Commit message:
Ibex 0.99.32 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: GloScope
Commit: 7fa8f007cdc208c041afb521f5b645abaf66fae9
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:51:58 -0700
Commit message:
Commit: 7fa8f007cdc208c041afb521f5b645abaf66fae9
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:51:58 -0700
Commit message:
GloScope 1.99.2 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: distinct
Commit: 27ff38a4a1a8f39ddc8b7da9d10f4795bf5e5ba4
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:50:44 -0700
Commit message:
Commit: 27ff38a4a1a8f39ddc8b7da9d10f4795bf5e5ba4
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:50:44 -0700
Commit message:
distinct 1.21.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: dar
Commit: 0dad027d0da018d89524ddfe9b24608d79d8d058
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:50:27 -0700
Commit message:
Commit: 0dad027d0da018d89524ddfe9b24608d79d8d058
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:50:27 -0700
Commit message:
dar 1.5.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: cytomapper
Commit: af0dac7ac267d48f447c2d0ba3709f2c92b56c37
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:45:32 -0700
Commit message:
Commit: af0dac7ac267d48f447c2d0ba3709f2c92b56c37
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:45:32 -0700
Commit message:
cytomapper 1.21.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: dandelionR
Commit: c08cfd6e00a5d6de935470d9e21e5ec43db7db43
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:41:51 -0700
Commit message:
Commit: c08cfd6e00a5d6de935470d9e21e5ec43db7db43
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:41:51 -0700
Commit message:
dandelionR 1.1.5 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: clusterExperiment
Commit: a2c55542459488efcbcb8738d3d81ca8dd153e62
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:40:31 -0700
Commit message:
Commit: a2c55542459488efcbcb8738d3d81ca8dd153e62
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:40:31 -0700
Commit message:
clusterExperiment 2.29.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: consensusSeekeR
Commit: ce188114dc4b35f01b602519ff1f18cc4c810ea4
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:37:13 -0700
Commit message:
Commit: ce188114dc4b35f01b602519ff1f18cc4c810ea4
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:37:13 -0700
Commit message:
consensusSeekeR 1.37.2 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: clustSIGNAL
Commit: 25823771e50da07d78da9b17561765794d94bd94
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:33:45 -0700
Commit message:
Commit: 25823771e50da07d78da9b17561765794d94bd94
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:33:45 -0700
Commit message:
clustSIGNAL 1.1.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: CiteFuse
Commit: 59857bc7acc28492e0a5d60c18b86fcf4043b958
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:33:20 -0700
Commit message:
Commit: 59857bc7acc28492e0a5d60c18b86fcf4043b958
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:33:20 -0700
Commit message:
CiteFuse 1.21.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: CHETAH
Commit: 050924f9f9e2ebd32b272e6a28cc7d18ffa189ba
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:33:07 -0700
Commit message:
Commit: 050924f9f9e2ebd32b272e6a28cc7d18ffa189ba
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:33:07 -0700
Commit message:
CHETAH 1.25.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: Cepo
Commit: 1ad1ab4228a87151761bce62b4decaa0770841c5
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:32:48 -0700
Commit message:
Commit: 1ad1ab4228a87151761bce62b4decaa0770841c5
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:32:48 -0700
Commit message:
Cepo 1.15.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: CellTrails
Commit: c14d7fd4a506e38baa3bcba0078812a17d14e96d
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:32:29 -0700
Commit message:
Commit: c14d7fd4a506e38baa3bcba0078812a17d14e96d
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:32:29 -0700
Commit message:
CellTrails 1.27.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: CellMixS
Commit: 8bd27b2f9cc58f2af066e9b84b28bb9f6d5560cf
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:32:16 -0700
Commit message:
Commit: 8bd27b2f9cc58f2af066e9b84b28bb9f6d5560cf
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:32:16 -0700
Commit message:
CellMixS 1.25.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: CellBench
Commit: 54c337599c87adae6d90aa5952332d826c14c53c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:32:00 -0700
Commit message:
Commit: 54c337599c87adae6d90aa5952332d826c14c53c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:32:00 -0700
Commit message:
CellBench 1.25.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: BUSseq
Commit: 496d3b3c7a8e66a8fc314224b3ded3cc50b8f7f6
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:31:10 -0700
Commit message:
Commit: 496d3b3c7a8e66a8fc314224b3ded3cc50b8f7f6
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:31:10 -0700
Commit message:
BUSseq 1.15.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: Banksy
Commit: deb0f590e711b6c02921d2cc10ebd3694a6e26e6
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:30:51 -0700
Commit message:
Commit: deb0f590e711b6c02921d2cc10ebd3694a6e26e6
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:30:51 -0700
Commit message:
Banksy 1.5.9 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: ASURAT
Commit: 1e68e9e63f9a620af825c3986258b108b4f410b6
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:30:06 -0700
Commit message:
Commit: 1e68e9e63f9a620af825c3986258b108b4f410b6
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:30:06 -0700
Commit message:
ASURAT 1.13.1 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: blase
Commit: 9f810b3050a3f37493160fb2374e381fb0609f67
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:27:41 -0700
Commit message:
Commit: 9f810b3050a3f37493160fb2374e381fb0609f67
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 11:27:41 -0700
Commit message:
blase 0.99.4 Update Seqinfo-holding serialized object(s) to reflect new location of Seqinfo class definition (the class was recently moved from GenomeinfoDb to the new Seqinfo package).
Package: Cardinal
Commit: 519bf09581047fa5bed597a16f137cbcd763eed8
Author: Kylie A. Bemis <k.bemis@northeastern.edu>
Date: 2025-10-14 14:19:22 -0400
Commit message:
Commit: 519bf09581047fa5bed597a16f137cbcd763eed8
Author: Kylie A. Bemis <k.bemis@northeastern.edu>
Date: 2025-10-14 14:19:22 -0400
Commit message:
v3.11.1
Package: Cardinal
Commit: 2e94b1d8e3488e86c1eb8d2b600ad558d95977df
Author: Kylie A. Bemis <k.bemis@northeastern.edu>
Date: 2025-10-14 14:16:09 -0400
Commit message:
Commit: 2e94b1d8e3488e86c1eb8d2b600ad558d95977df
Author: Kylie A. Bemis <k.bemis@northeastern.edu>
Date: 2025-10-14 14:16:09 -0400
Commit message:
cleanup contrastTest merge
Package: Cardinal
Commit: 40a6c52d37773c35bd2c9777e412439ef77e8d5b
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2025-10-14 14:08:38 -0400
Commit message:
Commit: 40a6c52d37773c35bd2c9777e412439ef77e8d5b
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2025-10-14 14:08:38 -0400
Commit message:
Merge pull request #69 from EBRogers/devel Merge contrast and lmer feature branch to devel
Package: Cardinal
Commit: 91e311d02593b2cc6e1f94b66a6bb5a0ed75b87e
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-13 14:39:46 -0700
Commit message:
Commit: 91e311d02593b2cc6e1f94b66a6bb5a0ed75b87e
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-13 14:39:46 -0700
Commit message:
Pulled all requireNamespace checks for lme4, emmeans, and lmerTest into a .checkContrastRequirements method and moved the check to happen sooner.
Package: Cardinal
Commit: 485221ffef173d89bb4c6b3079addebfe44fc380
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-13 14:26:18 -0700
Commit message:
Commit: 485221ffef173d89bb4c6b3079addebfe44fc380
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-13 14:26:18 -0700
Commit message:
Renamed ContrastResultsList class to ContrastTest (aka the results)
Package: Cardinal
Commit: 67ee6d84ea76d974f428f2b5c8e37b199a1a6526
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 14:25:17 -0700
Commit message:
Commit: 67ee6d84ea76d974f428f2b5c8e37b199a1a6526
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 14:25:17 -0700
Commit message:
Renamed ContrastResults to ContrastResultsList for better consistency with ResultsList and added require around lmer and emmeans usages.
Package: Cardinal
Commit: 7966c6679d7877f2e8fd980894a4d5f9c46527a0
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 11:14:01 -0700
Commit message:
Commit: 7966c6679d7877f2e8fd980894a4d5f9c46527a0
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 11:14:01 -0700
Commit message:
Changed contrastTest to be an ordinary function instead of an S4 method
Package: Cardinal
Commit: d51e05804fbf7db9fef1e036c76da78166e9b5cc
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 11:06:48 -0700
Commit message:
Commit: d51e05804fbf7db9fef1e036c76da78166e9b5cc
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 11:06:48 -0700
Commit message:
rename contrast to contrastTest
Package: Cardinal
Commit: 43567ae5559d5bfb1036428618e705afc20544b0
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 10:59:44 -0700
Commit message:
Commit: 43567ae5559d5bfb1036428618e705afc20544b0
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 10:59:44 -0700
Commit message:
Cleaned up the repository
Package: Cardinal
Commit: 3e1f9bb3663fd3d17a30d5b774209539e7cfd48b
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2025-10-09 12:37:48 -0400
Commit message:
Commit: 3e1f9bb3663fd3d17a30d5b774209539e7cfd48b
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2025-10-09 12:37:48 -0400
Commit message:
Merge pull request #64 from sslakkimsetty/master Resolved typo about MSImagingArrays inheriting from SpectralImagingArrays
Package: Cardinal
Commit: 6d22c61c48c84193ed6376d452c89617a4ec9eb9
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 09:31:33 -0700
Commit message:
Commit: 6d22c61c48c84193ed6376d452c89617a4ec9eb9
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 09:31:33 -0700
Commit message:
Updated documentation
Package: Cardinal
Commit: f30928f033ec5cd5adc45fbb2a3c3cfaac934050
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 09:09:59 -0700
Commit message:
Commit: f30928f033ec5cd5adc45fbb2a3c3cfaac934050
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-09 09:09:59 -0700
Commit message:
Fixed issue where printing contrast results object coerced names incorrectly
Package: Cardinal
Commit: 8b4bdee4c605e51afcb04b71601878af62aa47d6
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-08 08:22:49 -0700
Commit message:
Commit: 8b4bdee4c605e51afcb04b71601878af62aa47d6
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-08 08:22:49 -0700
Commit message:
Added topFeatures funcationality for contrasts and created ContrastResults class
Package: Cardinal
Commit: ff23be7d4619b160c975829fcb4551e479c29e25
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-08 07:20:47 -0700
Commit message:
Commit: ff23be7d4619b160c975829fcb4551e479c29e25
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-08 07:20:47 -0700
Commit message:
edited the way contrast names are constructed to preserve weird characters and spaces for easier understanding
Package: Cardinal
Commit: 2d0c65812ae515aa0c354144e4627e087066f374
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-07 18:16:52 -0700
Commit message:
Commit: 2d0c65812ae515aa0c354144e4627e087066f374
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-07 18:16:52 -0700
Commit message:
Updated docs, changed adjust to emm_adjust, updated stats tests
Package: Cardinal
Commit: 75117c11554343e5c29b3d144e8c939b01ffa53f
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-07 08:19:13 -0700
Commit message:
Commit: 75117c11554343e5c29b3d144e8c939b01ffa53f
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-07 08:19:13 -0700
Commit message:
Added ability to do contrasts on lm models and fixed/updated tests
Package: Cardinal
Commit: 779cfa219211546807ed0672e1fc4f787d5e78d5
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-06 08:57:17 -0700
Commit message:
Commit: 779cfa219211546807ed0672e1fc4f787d5e78d5
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-06 08:57:17 -0700
Commit message:
add contrast method for statistical comparisons
Package: Cardinal
Commit: 7007f00046d74f4a663b39c6067304efaa6facaf
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-02 09:40:32 -0700
Commit message:
Commit: 7007f00046d74f4a663b39c6067304efaa6facaf
Author: Ethan Rogers <86062792+EBRogers@users.noreply.github.com>
Date: 2025-10-02 09:40:32 -0700
Commit message:
Adding lme4::lmer as an option for running mixed effects models.
Package: Cardinal
Commit: 1423a664fabb45a7f9ac688bf863fee58a5edd5b
Author: Sai Srikanth Lakkimsetty <eolebgpc6@mozmail.com>
Date: 2025-04-27 00:01:44 -0400
Commit message:
Commit: 1423a664fabb45a7f9ac688bf863fee58a5edd5b
Author: Sai Srikanth Lakkimsetty <eolebgpc6@mozmail.com>
Date: 2025-04-27 00:01:44 -0400
Commit message:
Resolved typo about MSImagingArrays inheriting from SpectralImagingArrays
Package: rWikiPathways
Commit: 8d702e3aecdda6119bec7ff38db3a7a586b8166e
Author: Alexander Pico <alex.pico@gladstone.ucsf.edu>
Date: 2025-10-14 11:15:28 -0700
Commit message:
Commit: 8d702e3aecdda6119bec7ff38db3a7a586b8166e
Author: Alexander Pico <alex.pico@gladstone.ucsf.edu>
Date: 2025-10-14 11:15:28 -0700
Commit message:
update Description for release
Package: aggregateBioVar
Commit: 84d26ada8bbc7aa7247200b322b66c4dd0006328
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 10:38:00 -0700
Commit message:
Commit: 84d26ada8bbc7aa7247200b322b66c4dd0006328
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-10-14 10:38:00 -0700
Commit message:
aggregateBioVar 1.19.1 Update serialized SingleCellExperiment instance. Needed because of Seqinfo move from GenomeInfoDb package to new Seqinfo package.
Package: scLANE
Commit: e17c8c76d201f79c3a20c3ad72a1b454bb6234be
Author: Jack Leary <jrleary@live.unc.edu>
Date: 2025-10-14 13:35:55 -0400
Commit message:
Commit: e17c8c76d201f79c3a20c3ad72a1b454bb6234be
Author: Jack Leary <jrleary@live.unc.edu>
Date: 2025-10-14 13:35:55 -0400
Commit message:
reduced time of an Example to remove R CMD check warning about time limit
Package: BatchQC
Commit: 5210ca7f58779d33514389f1499ccd3368578a9d
Author: Jessica <102758461+jessmcc22@users.noreply.github.com>
Date: 2025-10-14 13:27:46 -0400
Commit message:
Commit: 5210ca7f58779d33514389f1499ccd3368578a9d
Author: Jessica <102758461+jessmcc22@users.noreply.github.com>
Date: 2025-10-14 13:27:46 -0400
Commit message:
Merge pull request #130 from jessmcc22/devel Added voom and updated limma
Package: BatchQC
Commit: 78bb44bc34ce74dbbe6e90b8faa3bc018d26e6b1
Author: Jessica <102758461+jessmcc22@users.noreply.github.com>
Date: 2025-10-14 13:27:15 -0400
Commit message:
Commit: 78bb44bc34ce74dbbe6e90b8faa3bc018d26e6b1
Author: Jessica <102758461+jessmcc22@users.noreply.github.com>
Date: 2025-10-14 13:27:15 -0400
Commit message:
Merge branch 'wejlab:devel' into devel
Package: BatchQC
Commit: d1e3719f8962edc698bbcecf0d468ab43f7a2eb8
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2025-10-13 17:37:58 -0400
Commit message:
Commit: d1e3719f8962edc698bbcecf0d468ab43f7a2eb8
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2025-10-13 17:37:58 -0400
Commit message:
Added voom as a normalization method
Package: BatchQC
Commit: 10ee8ce48e4355cc8a0622a9f5022c76887c1066
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2025-10-13 17:35:14 -0400
Commit message:
Commit: 10ee8ce48e4355cc8a0622a9f5022c76887c1066
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2025-10-13 17:35:14 -0400
Commit message:
Updated limma to allow for 1 covariate