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traseR

GWAS trait-associated SNP enrichment analyses in genomic intervals

Bioconductor version: 3.23 · Package version: 1.42.0

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("traseR")

Details

Maintainerli chen<li.chen@emory.edu>
AuthorLi Chen, Zhaohui S.Qin
LicenseGPL
Downloads rank416
Source branchRELEASE_3_23
biocViewsAlignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software

Documentation

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Dependencies

Depends: R (>= 3.5.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19

Suggests: BiocStyle, RUnit, BiocGenerics