target
Predict Combined Function of Transcription Factors
Bioconductor version: 3.23 · Package version: 1.26.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Implement the BETA algorithm for infering direct target genes from DNA-binding and perturbation expression data Wang et al. (2013) <doi: 10.1038/nprot.2013.150>. Extend the algorithm to predict the combined function of two DNA-binding elements from comprable binding and expression data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("target")Details
| Maintainer | Mahmoud Ahmed <mahmoud.s.fahmy@students.kasralainy.edu.eg> |
| Author | Mahmoud Ahmed [aut, cre] |
| License | GPL-3 |
| URL | https://github.com/MahShaaban/target |
| Bug Reports | https://github.com/MahShaaban/target/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Software, StatisticalMethod, Transcription |
| Package Short Url | https://bioconductor.org/packages/target/ |
Citation
From within R, enter citation("target"):
Mahmoud Ahmed. target: Predict Combined Function of Transcription Factors. doi:10.18129/B9.bioc.target, R package version 1.26.0, https://bioconductor.org/packages/target.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | target_1.26.0.tar.gz |
| Windows binary (x86_64) | target_1.26.0.zip |
| macOS binary (arm64) | target_1.26.0.tgz |
| macOS binary (x86_64) | target_1.26.0.tgz |
Dependencies
Depends: R (>= 3.6)
Imports: BiocGenerics, GenomicRanges, IRanges, matrixStats, methods, stats, graphics, shiny
Suggests: testthat (>= 2.1.0), knitr, rmarkdown, shinytest, shinyBS, covr