systemPipeRdata
systemPipeRdata: Workflow templates and sample data
Bioconductor version: 3.23 · Package version: 2.16.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
systemPipeRdata complements the systemPipeR workflow management system (WMS) by offering a collection of pre-designed data analysis workflow templates. These templates are easily accessible and can be readily loaded onto a user's system with a single command. Once loaded, the WMS can immediately utilize these templates for efficient end-to-end analysis, serving a wide range of data analysis needs.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("systemPipeRdata")Details
| Maintainer | Thomas Girke <thomas.girke@ucr.edu> |
| Author | Thomas Girke |
| License | Artistic-2.0 |
| URL | https://github.com/tgirke/systemPipeRdata |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Alignment, ChIPSeq, Coverage, DataImport, ExperimentData, GeneExpression, GeneSetEnrichment, Genetics, ImmunoOncology, Infrastructure, MethylSeq, QualityControl, RNASeq, RiboSeq, SNP, Sequencing, WorkflowStep |
| Package Short Url | https://bioconductor.org/packages/systemPipeRdata/ |
Citation
From within R, enter citation("systemPipeRdata"):
Thomas Girke. systemPipeRdata: systemPipeRdata: Workflow templates and sample data. doi:10.18129/B9.bioc.systemPipeRdata, R package version 2.16.0, https://bioconductor.org/packages/systemPipeRdata.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | systemPipeRdata_2.16.0.tar.gz |
Dependencies
Depends: R (>= 3.6.0)
Imports: methods, Biostrings, BiocGenerics, jsonlite, remotes
Suggests: GenomicFeatures, DT, txdbmaker, GenomicRanges, IRanges, Rsamtools, ShortRead, rtracklayer, RUnit, BiocStyle, knitr, rmarkdown, systemPipeR, kableExtra, magrittr, dplyr, gert
Reverse dependencies
Suggests Me (2): systemPipeR, systemPipeShiny