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seqPattern

This is the released version of seqPattern; for the devel version, see seqPattern.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences

DOI: 10.18129/B9.bioc.seqPattern

Bioconductor version: Release (3.23)

Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.

Author: Vanja Haberle <vanja.haberle at gmail.com>

Maintainer: Vanja Haberle <vanja.haberle at gmail.com>

Citation (from within R, enter citation("seqPattern")):

Vanja Haberle. seqPattern: Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences. doi:10.18129/B9.bioc.seqPattern, R package version 1.44.0, https://bioconductor.org/packages/seqPattern.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("seqPattern")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqPattern")

Details

Package Archives

Follow Installation instructions to use this package in your R session.