selectKSigs
This is the released version of selectKSigs; for the devel version, see selectKSigs.
All Bioconductor versions of selectKSigs
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation
Bioconductor version: 3.23 · Package version: 1.24.0
A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.
Author: Zhi Yang [aut, cre], Yuichi Shiraishi [ctb]
Maintainer: Zhi Yang <zyang895 at gmail.com>
Citation
From within R, enter citation("selectKSigs"):
Zhi Yang. selectKSigs: Selecting the number of mutational signatures using a perplexity-based measure and cross-validation. doi:10.18129/B9.bioc.selectKSigs, R package version 1.24.0, https://bioconductor.org/packages/selectKSigs.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("selectKSigs")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.24.0 |
| License | GPL-3 |
| URL | https://github.com/USCbiostats/selectKSigs |
| Bug Reports | https://github.com/USCbiostats/HiLDA/selectKSigs |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.11 (R-4.0) (6 years) |
| Downloads rank | 1959 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Clustering, Sequencing, Software, SomaticMutation, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/selectKSigs/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("selectKSigs")| selectKSigs: a package for selecting the number of mutational signatures | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | selectKSigs_1.24.0.tar.gz |
| Windows binary (x86_64) | selectKSigs_1.24.0.zip |
| macOS binary (arm64) | selectKSigs_1.24.0.tgz |
| macOS binary (x86_64) | selectKSigs_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/selectKSigs |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/selectKSigs |
| Package Downloads Report | Download Stats |