riboSeqR

This is the released version of riboSeqR; for the devel version, see riboSeqR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Analysis of sequencing data from ribosome profiling experiments

Bioconductor version: Release (3.23)

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Author: Thomas J. Hardcastle [aut], Samuel Granjeaud [cre] ORCID: 0000-0001-9245-1535

Maintainer: Samuel Granjeaud <samuel.granjeaud at inserm.fr>

Citation (from within R, enter citation("riboSeqR")):

Thomas J. Hardcastle. riboSeqR: Analysis of sequencing data from ribosome profiling experiments. doi:10.18129/B9.bioc.riboSeqR, R package version 1.46.0, https://bioconductor.org/packages/riboSeqR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("riboSeqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("riboSeqR")

riboSeqR	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Genetics, RiboSeq, Sequencing, Software, Visualization
Version	1.46.0
In Bioconductor since	BioC 3.0 (R-3.1) (12 years)
License	GPL-3
Depends	R (>= 3.0.2), methods, GenomicRanges, abind
Imports	Rsamtools, IRanges, S4Vectors, baySeq, Seqinfo, seqLogo
System Requirements
URL	https://github.com/samgg/riboSeqR
Bug Reports	https://github.com/samgg/riboSeqR/issues

Suggests	BiocStyle, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	riboSeqR_1.46.0.tar.gz
Windows Binary (x86_64)	riboSeqR_1.46.0.zip
macOS Binary (big-sur-x86_64)	riboSeqR_1.46.0.tgz
macOS Binary (sonoma-arm64)	riboSeqR_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/riboSeqR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/riboSeqR
Package Short Url	https://bioconductor.org/packages/riboSeqR/
Package Downloads Report	Download Stats