annotation
Genomic Annotation Resources
Bioconductor version: 3.23 · Package version: 1.36.0
Annotation resources make up a significant proportion of the Bioconductor project. And there are also a diverse set of online resources available which are accessed using specific packages. This walkthrough will describe the most popular of these resources and give some high level examples on how to use them.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("annotation")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Marc RJ Carlson [aut], Hervé Pagès [aut], Sonali Arora [aut], Valerie Obenchain [aut], Martin Morgan [aut], Lori Shepherd [ctb], Bioconductor Package Maintainer [cre] |
| License | Artistic-2.0 |
| URL | http://bioconductor.org/packages/annotation |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | AnnotationWorkflow, Workflow |
| Package Short Url | https://bioconductor.org/packages/annotation/ |
Citation
From within R, enter citation("annotation"):
Marc RJ Carlson, Hervé Pagès, Sonali Arora, Valerie Obenchain, Martin Morgan. annotation: Genomic Annotation Resources. doi:10.18129/B9.bioc.annotation, R package version 1.36.0, https://bioconductor.org/packages/annotation.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | annotation_1.36.0.tar.gz |
Dependencies
Depends: R (>= 3.3.0), GenomeInfoDb, VariantAnnotation, AnnotationHub, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.ensGene, org.Hs.eg.db, org.Mm.eg.db, Homo.sapiens, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome, TxDb.Athaliana.BioMart.plantsmart22